Olea europaea var. sylvestris (wild olive): 111387193
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Entry
111387193 CDS
T05244
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
oeu
Olea europaea var. sylvestris (wild olive)
Pathway
oeu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oeu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111387193
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oeu03019
]
111387193
Messenger RNA biogenesis [BR:
oeu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
111387193
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
111387193
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
111387193
NCBI-ProteinID:
XP_022867508
LinkDB
All DBs
Position
3:15499837..15526048
Genome browser
AA seq
2383 aa
AA seq
DB search
MFRQYAAYGMEGSILVLHNCLDHLNIHGNLKNMQLHPVYASIFKHMLDKPNFSTVFCVSL
KTAVINEEFLQNLSDALHLSAYEKIGVGLALSDSENLDIRMCGKKFCMGQIAELCTNPVA
WDSTELIQHILVFLHRSEGLSKHVDSFVQMLSLLQLNEENQFILSPFLSSELREANFFRH
LDLFNEDSEDDFDTILAEMEKEMSVADMMKELGYGCTMDVSQCKEMLSLFLPLNEFKIAK
ILGTIARTYAGLNDSQTAFTIFCSALGYNSVSDLPLLNSWNVHILVDSIKQLAPGINWIN
VMGCLDHEGFYIPNEASFSLFMSFYRHGCQDPFPLHAVCGSVWNNVEGQLSFLKYAVAVP
PEVFTFSHSERQLAYDDAVNGHKFQSEDTNHAWLCLDLLEVLCQLAERGHASSVRAILKD
PLDNCPKVLLLGMAHVNTAYNLLQYEVSSTVFPMVLRHALGDSVILHLWRVNPYMALQGF
IDSMNSDLDNLTRVLDACQESKMLTPVLDMIPSYFGVRLAAVASSKELLDLEKWLGTHLS
TYKEAFYEECLKFLKEVVVRAQEVSINRFHSRDSLVNVYLEACSTLLKVLQSHSGIISSS
HLSEELEKLHATYLHATGRLKNDGVADSATSDGYADDIETQANSYFHQLFSGQLTIDAMI
QKLARFKESAEKRQQSIFEFMIANLFEEYKFFSKFPETQLKIAAFLFGSLIKHQLVTHLT
LGIALRAVLDALRKPADSKMFIFGTKALEQFVDRLVEWPQYCNHILQISHLRGTHTELVS
FIERTLARISSAHAEPEVTHGATADQQHVIQASGTNMEMLGSSFSLNGPGGSSQTGLQVS
SPVLLSQRQLNSLDERKASITLPNYMKPVSTTAGQSSTVPSSDSIQKSQILVNASSAQVS
SGFARSSRATSARFGSALNIETLVAAADRRETPIEAPASEIQDKISFIINNLSAANFEAK
AKELTDILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNMKPLNKEIVQTTYENCK
VLLGSELIKSSSEERSLLKNLGSWLGKITIDKNQVLRAREIDPKSLIIEAYEKGLMIAVI
PFTSKVLDSCSNSLAYQPPNPWTMGILGLLTEIYAMPNLKMNLKFDIEVLFKNLGVDLKD
VTPTSLLKDTVREFEGNPDFSNKDIGASQPQMVNEVKSGTLSTQNQVELPLDVAIPPHPT
SHSRVLSQYTTPLHLSSGMLLDDEKLALGLSDQLPSAQNLLHGQTQLSLNQLPVPASNIE
QQVIVNPKLHALGLHLHFQSVLPIAMDRAIKEIVSSIVQRSVSIATQTTKEVVLKDYAME
PDEALIRNAAHLMVARLAGSLAHVTCKEPLRGSISSQLRSTLQGSSISSELLEAVQIVTN
DNLDLGCALIEQAATEKAIQTIDGEIAQQLSIRRKHRESVGPTFFDASLCTQGHMSALPE
ALHPRPGRLSHSQQRVYEDFVRLPWQNRPTHNSNAVSVGPSISSGSSGMSRQFASVSGQI
NPDMYSSGLVNTGLGAVSQTLDIGSEEIDNSSAQHPSLPSTHIATADGLSPRSLENDTVA
SYPPVSAPELHIDPPISAKESGSGPQTPNPTLAFERVGSNVLEPLLTTGDALDQYQIISE
KLENLLSVDNKEAEIQGVVAEVPAVILRCVSRDEAALAVAQKTFKGLYENASNNAHVNAH
LAILAAIRDVSKLVVKELTTWVIYSDEDRKFNKDITIGLIHSELLNLAEYNVHMAKLLDA
GRNKAATEFAISLIEILVVNDSEVISELHDLVDALAKLAARPGSTESLQQLVEIAKNPSG
NSAALSDVIVGTEENIGSSRDKKAIGLSGAIREDYTSTELVDPDPAGFQEQVSVLFAEWY
QICELPGTNDAACAHYILRLFQRGLLKGDDMSDRFFRRLMELSVSHCSSSEVINSGPSLL
HQGQPLSFLAIDIFAKLVFSILKFSPDQGSSKLSLLPKVLAAAVKFIQKDAEEKRTSFNP
RPYFRLFINWLLDLCFLDPVFDGANFQVLTVVANTFHALQPLKVPGFSFAWLELVSNRSF
MPKLLTANAQKGWPYFQRLLVDLFQFMEPFLRNAELGEPVHFLYKGTLRVLLVLLHDFPE
FLCDYHFSFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKIDLLTEISQSPRILAEV
DASLKAKQMKNDVDEYLKTRQQGSTFLADLKQKLLRTPSDAAHGGTHYNVPLINSLVLHV
GMQAIQQLQARAPPHSQSMASMTVFLVSAALDIFKTLIMDLDTEGCYLFLNAVANQLRYP
NNHTHYFSFILLHLFAESNQEMIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPRYNF
WNRSFTRCAPEIEKLFESVSRSCGGPKPVDDGVGSGGIPDNMH
NT seq
7152 nt
NT seq
+upstream
nt +downstream
nt
atgtttcgacagtatgctgcatatggaatggagggaagcatattggtgctccataattgt
ttggatcacctgaatattcatgggaacttgaagaatatgcagctgcatccagtatatgct
tcaatttttaagcatatgttggataaacctaatttcagtactgttttctgtgtatctctg
aagactgctgttataaatgaagaatttctacagaatctatctgatgccttacacttgtca
gcatacgaaaaaattggagttggtcttgctttatcagattcagaaaaccttgatatccga
atgtgtggaaagaaattctgcatgggtcagattgcagagttgtgcaccaatccagtggcg
tgggattccactgaactaattcagcacattctagtgtttcttcatcgatctgaaggcctt
tcaaagcatgtggattcatttgtgcaaatgttatctctattgcaattgaacgaggaaaac
caattcattttatctccatttctttccagtgaattacgggaagccaacttcttcaggcac
ttagatttgttcaatgaagacagtgaagatgattttgatactattttagctgaaatggag
aaggaaatgagcgtggctgatatgatgaaggaattaggttatggctgcaccatggatgta
tcacagtgcaaagaaatgttgtctcttttcttgccactcaatgaattcaaaattgcaaag
atacttggtacaattgcccggacctatgcgggtcttaatgacagtcaaactgcgttcaca
atattctgctctgcccttggttacaacagtgtttctgatctgccattgctgaactcttgg
aacgtacatatcctggttgattcgatcaagcaacttgctcctggaattaattggataaat
gtcatggggtgcctggaccacgagggcttttatatccctaatgaagcatcattttccctt
tttatgtccttctatagacatggatgtcaggatccctttcctctccatgctgtttgtggc
tctgtttggaataatgttgagggtcaactatcatttctgaaatacgctgttgcagtgcca
cctgaagtattcacattttctcattccgaaaggcagctggcctatgatgatgctgtgaat
ggacacaagttccaatctgaagatacaaatcatgcctggttatgtcttgacctgctggag
gtgttatgtcagctagcagaaaggggtcatgcaagttctgtgcgagctattctgaaagat
cctcttgataattgtcccaaagtcttgcttcttgggatggcccacgtgaatactgcatat
aatctactccagtatgaagtgtcttccactgtttttcccatggtactcagacatgcattg
ggagacagtgtaatacttcacctgtggcgtgtcaacccttacatggcgttgcaaggattt
attgattccatgaactctgatctggacaacttgactagagttttggatgcctgccaggaa
tcgaagatgctaactccagtgttggatatgattccttcttattttggtgttcgactggct
gccgttgcttctagtaaagaactcttagatctcgagaaatggttgggaactcatttaagt
acatataaagaagctttttatgaggagtgcctcaagttcctcaaggaggttgtggtcaga
gctcaggaagtttctattaaccgctttcattcccgtgattctcttgtgaatgtttatctg
gaagcttgttccaccctcttgaaggtccttcagtctcattctggcattatttcctctagt
catttgtccgaggaattggaaaaattgcatgcgacttatctgcatgctaccggaagactt
aagaatgacggggtagctgactcagcaacatctgatggttatgctgacgatattgagaca
caagcaaactcttacttccatcaattgttttcgggtcaattgacaattgatgcgatgatt
caaaagcttgctcgcttcaaagaatctgcagagaaaaggcaacaatcgatttttgagttc
atgatcgctaatctatttgaggagtacaagttcttctccaagttccctgaaactcagctc
aaaattgctgcatttctttttgggtcgctcattaagcatcaactcgtaactcatctaaca
cttggtattgctttacgagctgttttggatgcattgcgaaaacccgctgattcaaaaatg
tttatctttggcactaaggctctggaacaattcgtggaccgcctagtagagtggccacaa
tattgcaaccatatcttacaaatatctcatctgcgtggtactcacacagaacttgtttca
ttcattgaacggacacttgccaggatttcatctgcacatgcagaaccagaggttacacat
ggtgccactgcagatcagcaacatgtaatccaagcttctgggacaaatatggagatgctg
ggttcatcattttcactgaatggacctggtggtagttcacagacgggattgcaagtctct
tctccggtcctcctatcacaaagacagctaaattctttagatgagagaaaagcctctata
acattgcctaattacatgaagccagtttcaaccactgctgggcaatcttctactgttcct
tcaagtgatagcattcagaagtcacaaattctggtgaatgcttcatcagcacaggtttct
tctggttttgctcgttcatcacgagctacctcagcaagatttggctctgctctaaatatt
gaaacgcttgttgctgctgcagatagaagggaaacacctatagaggctcctgcatctgaa
attcaggataagatatcatttattattaataacttatctgccgcaaattttgaagctaaa
gcaaaagaattaactgacatcttgaaagagcagtactatccctggtttgcccagtatatg
gtgatgaaaagagcaagcatcgagccaaattttcatgacttgtacttgaagttccttgat
aaagtaaatatgaagcctttgaacaaagagattgttcaaaccacttacgagaactgcaag
gttcttttaggatcagagcttataaaatcaagttcggaagaacgttcattgctgaaaaat
ttgggaagctggcttgggaagattacaattgacaaaaatcaagttctcagggcacgggag
atagatcccaaatctctgattatagaggcttacgagaaaggattaatgattgctgttatt
ccttttacctccaaggttctggattcatgttcaaacagtcttgcatatcaacctcctaac
ccttggaccatgggtattcttggattactcaccgagatttacgcaatgcctaatttaaaa
atgaaccttaagtttgacattgaggtcttgtttaagaaccttggcgtagatttaaaggat
gtaaccccaacttcacttctcaaagacacagttcgcgagtttgaaggaaatcctgatttt
tcaaacaaagatattggagcttcccagccgcagatggtaaatgaagtcaaatctggaaca
ttatccacacaaaatcaagttgagctaccccttgatgttgccattcctcctcatcctact
agccattcacgtgtattatctcagtatactactcctctccatctctcatctggtatgctg
ctggacgatgagaagctggctttaggtttatcagatcagcttccctctgctcaaaatctt
ctacacggtcaaacacagttatcacttaatcagcttcctgttccagcatctaatattgag
cagcaagtcattgtcaatccaaagcttcatgctttaggcctacacttgcatttccagagt
gtacttccaattgccatggatagagctatcaaagaaatagtgtcgagtattgtgcagcgt
agtgtttctatagcaactcagacaacaaaggaagttgttttgaaggactacgcgatggag
ccggatgaggctcttatacgtaatgcagcacacttgatggttgcaaggttggcagggagt
ctagctcatgtgacatgcaaggaacctttgcgtggctcaatatcaagtcagctcaggagt
acacttcagggatcaagtatatcaagtgaacttcttgaagctgttcaaattgtgaccaat
gacaatcttgacctcggatgtgcactgattgaacaagctgcaacagagaaggcaattcaa
acgattgatggagagattgcccagcagctttctatacggaggaagcatagagagagtgtt
ggtcctacattttttgatgctagcctgtgcacgcaaggtcacatgagtgcgctaccagag
gctcttcatcctagaccaggccgcttatcacattcacagcagcgagtatacgaggatttt
gttcggttgccatggcagaatcggccaacccataactcaaatgctgtgtctgttggtccc
tccatttcatctggcagtagtggcatgtcccggcaatttgcatctgtatctggccaaatt
aatccggacatgtattcatctggccttgttaacactggccttggtgctgtatcccagact
ttggatattggctctgaggagatagacaatagttcggctcagcatcctagtctaccctca
actcatattgcaacagctgatggccttagccctcgaagtcttgaaaatgatactgttgct
tcatatcctccagtctcagctcctgaactgcatattgaccctcccatctctgctaaagaa
tctggaagtggaccacagactccaaatcctactttggcttttgagcgtgttggaagtaat
gtcttagagccattgttgaccacaggcgatgcattggatcagtaccagattatttcagag
aagcttgaaaatctattatctgttgataacaaggaagcagaaatccagggagttgtagct
gaagttccggctgtcatcctcagatgcgtaagccgggatgaggctgccttggctgtggct
caaaagactttcaaaggcttgtatgaaaatgcttcaaacaatgctcatgtcaatgctcac
cttgcaatcctggctgctattcgtgatgttagtaaacttgttgtgaaggagctaactacc
tgggttatatactccgacgaggaccggaagttcaataaagatattacaattggtcttatt
cacagtgaattattaaaccttgctgagtataatgtccacatggcaaagcttcttgatgca
ggaaggaacaaggctgccactgaattcgcgatttctctcatagaaatattagttgtcaat
gattctgaagtcatttcagaactacacgatcttgttgatgctctggcaaagcttgctgca
agacctggatctactgaatcattgcagcagcttgttgagattgctaagaatccctctggt
aattctgctgctttatcggatgtcattgttggaacagaggaaaatatcggatcatctaga
gacaaaaaggctattgggctttctggagcgatcagggaagactacacttcaacagagttg
gtggatccagatcctgctggttttcaggagcaggtttctgtactgtttgcggaatggtac
caaatatgtgaacttccgggaacaaatgatgcagcttgtgctcattacatcttacgctta
tttcagagaggtctactcaaaggagatgacatgtcagatcgctttttccgccgtctcatg
gaactgtcagtgtcacattgctcatcttcggaggtgatcaattctggcccatctctgttg
catcagggacaacctttatcttttcttgctatcgacatctttgctaaattagtcttctca
atcttgaagttttctcctgatcaaggatctagcaaactctctcttctgcctaaggttctt
gcagcggctgtgaagttcattcagaaagatgctgaagagaagaggacttcctttaatcca
agaccatattttaggttgtttattaactggctgctggatctgtgtttcttggaccctgtt
tttgacggagcaaatttccaggttttgactgttgtagcaaataccttccatgctcttcaa
cctctcaaagttcctggattcagctttgcatggctagagttggttagtaatagaagtttt
atgccaaaattactcacagcaaatgcacagaaggggtggccctattttcagcggttgtta
gtagacttgtttcagttcatggaaccatttcttaggaatgctgaactgggtgaacctgtc
cactttctttacaaaggcacactcagggtgttgctggtgctactccatgattttccagag
tttctttgtgattatcatttcagcttctgtgacgtgattcccccaagctgcatacagatg
cgaaatataatcctcagcgcatttcctcgtaacatgaggctaccggatccttctactccc
aacttaaagattgatctgctgacagagataagtcaatcaccacgtattcttgctgaggtt
gatgcttctcttaaagcaaagcagatgaagaatgatgttgacgagtatctaaagactagg
caacaagggtctacatttcttgctgatttgaagcaaaaacttctgcgtactccaagcgat
gcagctcatggtgggacccattacaatgttcctctcatcaactcccttgtacttcatgtt
gggatgcaggctattcagcagctgcaggctagagcaccccctcattcacagtccatggct
agtatgacagttttcttggtcagtgctgctttggacattttcaagactttgataatggat
ctggacactgagggttgttatttatttctaaatgcggttgctaaccaattacgttatcca
aacaaccacacacattacttctctttcatccttctccacctttttgccgaatcaaaccag
gaaatgattcaggagcaaatcactagagtactgttggagcgactcatcgttaataggcct
catccatggggtcttctaattacttttattgagctaatcaagaatcccaggtataacttc
tggaaccgatctttcacaaggtgtgcaccggagattgagaaactcttcgaatcagtatca
agatcctgtggtggtccaaaacctgtggatgatggtgtaggatctggtggaataccagat
aacatgcactaa
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integrated database retrieval system
