Olea europaea var. sylvestris (wild olive): 111409878
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Entry
111409878 CDS
T05244
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
oeu
Olea europaea var. sylvestris (wild olive)
Pathway
oeu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oeu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111409878
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oeu03019
]
111409878
Messenger RNA biogenesis [BR:
oeu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
111409878
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
111409878
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
111409878
NCBI-ProteinID:
XP_022895737
LinkDB
All DBs
Position
15:4067820..4092816
Genome browser
AA seq
2412 aa
AA seq
DB search
MIPFSSAVSSQIRFLLQSLNDSNTDSVFLELCQYAAYGMEGSILVLQTCLDHLNIYGNLK
NMQLHPVYASIFKHVLDKPNFSTVFCGSLRTAAVNEEFLQNLSDALHLSACEKIGVGLAL
SDSENLDIRMCGKNFCMGQIAELCANPVAWDSTDLIQHILVFLNRSESLSKHVDSFVQML
SLFQLSEETQFILAPFLSSELREANFFRHLDLVNEGSADDFDAILAEMEKEISVADMMKE
LGYGCTVDLSQCKEMFSLFLPLTEVKIARILGTIAQTYEGLDDSQTAFTTFRSALGSNNV
SDLPFLNSWNVDILVDSIKQLAPGTNWINVMESLDHEGFYIPNEASFSFFMSFYRHACQD
PFPLHAVCGSVWKNVEGQLSFLKYAVAVPPEVFTFAHSERQLAIADAAISHKFQSRHTNH
AWLCRDLLEVLCQLAERGHASSVRAILKDPLDNCPEFLLLGMAHVNTAYNLLQHEVSSAV
FHLLLGHALGNSLILHLWHVNPHMLLRGFTDAMNSDPDNLTRVLNACQELKMLTPVLDMI
PSYFAVRLAALASSKELIDLEKWLGTNLSTYRDAFYEECLKFLKEVVVGSQEVSINRFHS
PGSLMNIYLEACSTLIKVLKSHSGIISSSHLSEELEKLHASYLHATEKLKNGGVADSATS
DGDADDIEIEANSYFHQLFSGQLTIEAMIQMLARFKESSEKRQQLIFECMIGNLFEEYKF
FSKYPERQLKIAAFLFGSLIKHQLVTHLTLGIALRAVLDGLRKPADSKMFVFGTKALEQF
VDRLVEWPQYCNHILQISHLRGTHAELVAFIERTLARISSAHGEQDVGPSATADQHHGIQ
ASGTNVEMLGSSFSLSGPGGSSQTGLQVSSPILLSQRQLNSLDERKVPITLPNYKKPVST
TAGHSATLPASDVSITQKSQNLANASSAQSSGVGRSSRATSARFGSALNIETLVAAAERR
ETPIEAPASEIQDKISFIINNLSATNFEAKAKELTDILKEQYYPWFAQYMVMKRASIEPN
FHDLYLKFLDKVNMKPLNKEIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGRITI
GKNQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKVLDSCSNSLAYQPPNPWTMGILGLL
TEIYAMPNLKMNLKFDIEVLFKNLGVDLKDVTPTSLLKDRVREVEGNPDFSNKDIGASQP
QMVNEVKSGTISTQNQVELPLDVASPLHPTGHSRVLSQYAAPLHLSSGTLPDEEKLALGL
SDQLPSAQNLLQGQTQLSVNQLPVPASNIEQQVIVNPKLHALGLHLHFQSVLPIAMDRAI
KEIVSSIVQRSVSIATQTTKELVLKDYAMEPDETLIRNAAHLMVARLAGSLAHVTCKEPL
RSSISSQLRSTLQGSSLSSELLEAVQIVTNDNLDLGCALIEQAATEKAIQTIDGEIAQQL
SIRRKHRESVGPTFFDANLYAQGHMGVLPEDLRPKPGRLSQSQQRVYEDFVRLPWQNRST
HSTNAVPVGPSISSGSSGMSRQFASASVQINPGVYSSGLVGTGISAIPQNLEIGSEEMDN
SSTQLPSFSTTHIATADGLSPQSLENDTVASYASVSTTELHIDPPISAKESGSGPQTPNP
TLASDRAGSNVLEPLLTTGDALDKYQTISEKLENLLTGDAMEAEIQGVIAEFPAVILRCI
SRDEAALAVAQKAFKGLYENASNNAHVSAYLAILAAIRDVSKLVVKELTSWVIYSDEDRK
FNKDITIGLIHSELLNLAEYNVHMAKLLDAGRNKAAMEFVISLIETLVVNDSKVISELHN
LVDALAKIASRPGSPESLQQLVEIAKNPSGNSAAISGVIGTEENIRSSKDKKAIGLSGVN
RDDHTSMELVDPDPTGFQEQVSVLFAEWYQICELPGTNDAACARYIIQLFQRGLLKGDDM
SDRFFRRLMELSVSHCLSSEVINSGPSQLHQGQPLSFLAIDIFAKLVFSILKFSPDQGSS
KLSLLPKVLAVAVKFIQKDAEEKRTSFNPRPYFRLFVNWLLDLCSLDPVVDGANFLVLTV
IANTFHALQPLKVPGFSFAWLELVSHRSFMPKLLTTNAQKGWPYFQRLLVDLFQFMEPFL
RNAELGEPVHFLYKGTLRVLLVLLHDFPEFLCDYHFSFCDVIPPSCIQMRNIILSAFPRN
MRLPDPSTPNLKIDLLTEISQSPRILADVDAALRAKQMKNDVDEYLKTRQQGSSFLTELK
QKLLLSPTDAARAGTHYNVPLINSLVLYVGMQAIQQLQARAPPHSQSMTSMTMFLVSAAL
EIFQTLIADLDTEGCYLFLNAVANQLRYPNNHTHYFSFILLYLFAESNQEMIQEQITRVL
LERLIVNRPHPWGLLITFIELIKNPRYNFWSRSFTRCAPEIEKLFESVSRSCGGPKPVDD
GVGSGGIPDNMH
NT seq
7239 nt
NT seq
+upstream
nt +downstream
nt
atgattccattctcatctgctgtttccagtcagattcgatttctacttcagagcttgaac
gactccaacacagattcagtttttttagagctctgtcagtatgctgcatatggaatggag
ggaagcatattggtgctccaaacttgtttggatcacctgaatatttatgggaacttgaag
aatatgcagctgcatccagtatatgcttcaatttttaagcacgtgttggataaaccgaat
ttcagtactgttttctgtgggtcactgaggactgcagcagtaaatgaagaatttctgcag
aatctatctgatgcattacacttgtcagcgtgcgagaaaattggagttggtcttgcttta
tcagattcggaaaaccttgatatcagaatgtgcggaaagaacttttgcatgggtcagatt
gcggagttgtgtgccaatccagtggcctgggattccactgatttaattcagcacattcta
gtgtttcttaatcgatctgaaagcctttccaagcatgtagattcatttgtacaaatgtta
tctctattccaattgagtgaggagacccaattcattttagctccatttctttccagtgaa
ctacgggaagccaacttcttcaggcacttagatttggtcaatgaaggcagtgcagatgat
tttgatgctattttagcagaaatggaaaaggaaatcagcgtggctgatatgatgaaggaa
ttaggttatggctgcaccgtggatttatcacagtgcaaagaaatgttctctcttttcttg
ccactcactgaagtcaaaattgcaaggatacttggtacaattgcccagacctatgagggt
cttgatgacagtcaaactgcattcacaacattccgctcagctcttggtagcaataatgtt
tctgatctgccatttctgaactcttggaacgtagatatcctggttgattcgatcaagcaa
ctcgctcctggaaccaactggataaatgtcatggagagcctggaccacgagggcttttat
attcctaatgaagcatcattttcgttttttatgtccttctatagacatgcatgtcaggat
ccctttcctctccatgctgtttgtggctctgtttggaagaatgttgagggtcaactctct
tttctgaaatacgctgttgcagtgcctcctgaagtatttacatttgctcattccgaaagg
caactggccattgctgatgctgcgatcagtcacaagttccagtctagacatacaaatcat
gcctggttatgtcgtgacctgctggaggtgttgtgtcagctagctgaaaggggtcatgca
agttctgtgcgagctatactgaaagaccctcttgataattgtccggaattcttgcttctt
gggatggcccatgtgaatactgcatataatctcctccaacacgaagtgtcttctgctgtt
ttccacctgctacttggacatgctttgggaaacagtttaatacttcacctgtggcatgtc
aaccctcacatgttgttgcgaggatttactgatgctatgaactctgatcctgacaattta
actagagtattgaatgcctgccaggaattgaagatgctaactccagtattggatatgata
ccttcttattttgctgttcgactggctgcccttgcttctagtaaagaactcatagatctc
gagaagtggttgggcactaatttaagtacatatagagatgctttttatgaggagtgcctc
aagttcctaaaggaggtagtggtcggatctcaggaagtttctattaaccgttttcattcc
cctggttctcttatgaatatttatttggaagcttgttccaccctcataaaggtccttaag
tctcattctggcattatttcctctagtcacttgtctgaggaattggaaaaattgcatgca
agttatctgcatgctactgaaaaacttaaaaatggcggggtcgctgactcagcaacttct
gatggtgatgccgacgatattgagatagaagcaaactcatacttccatcaattgttttct
ggtcagctgacaattgaagcgatgattcaaatgcttgctcgcttcaaagaatcttcagag
aagaggcaacaattgatttttgagtgcatgatcggtaatctatttgaggagtacaaattc
ttctctaagtaccctgaaaggcagctcaaaattgctgcatttctttttgggtcgctcatt
aagcatcaacttgtaactcatctaacacttggtattgctttgcgagctgttctggatgga
ttgcgaaaacctgcggattcaaaaatgtttgtctttggcaccaaggctctggaacaattt
gttgaccgcctggtagagtggccacaatattgcaaccatatcttacaaatatctcatttg
cgtggtactcacgcagaacttgttgcattcattgagcggacgcttgccaggatttcatcc
gcacatggagaacaagatgttgggcccagtgccactgctgatcagcatcatggaatccaa
gcttctgggacaaacgtggagatgctgggctcatctttttcactaagtggacctggtggt
agctcacagacgggattacaagtctcttctccaatactactatcacaaagacagctaaat
tctttagatgagagaaaggtccctataacattgcctaattataagaagccagtttcaacc
actgcagggcattctgctactcttcctgcaagtgatgtgtctatcactcagaagtcacag
aatctggcgaatgcttcgtcagcgcagtcttctggtgttggtcgttcatcccgagctacc
tcagcaagatttggctctgctctaaatattgagacgcttgttgctgctgcagagagaaga
gaaacacccatagaggctcctgcatcagaaattcaggataagatatcatttattattaat
aacttatctgccacaaattttgaagctaaagcaaaagaattaactgacatcttgaaagag
caatactatccctggtttgcccagtatatggtgatgaaaagagcaagcattgagccaaat
tttcacgacttgtacttgaagttccttgataaagtaaatatgaagcctttgaacaaagag
attgttcaagccacttacgagaactgcaaggttctcttaggatcagagcttataaaatca
agttcagaagaacgttcattgctgaaaaatttaggaagctggcttgggaggataacaatt
ggcaaaaatcaagttctaagagcacgggagatagatcccaaatctctgattatagaggct
tatgaaaaaggattaatgatcgctgttattccttttacctccaaggttctggattcatgt
tcaaacagtcttgcatatcaacctcctaacccttggaccatgggtattcttggattactc
actgagatttatgcaatgcctaatttaaaaatgaacctcaagtttgacattgaggtcttg
tttaagaaccttggcgtagatttaaaggatgtaaccccaacttcacttctcaaggacaga
gttcgcgaggttgaagggaatcctgatttttccaacaaagatattggagcttcccagcca
cagatggttaatgaggtcaaatctggaacaatatctactcaaaatcaagttgagttaccc
ctcgatgttgccagtcctcttcatcctactggccattcacgtgtattatctcagtatgct
gctcctctccacctatcatctggcacattgccagatgaagagaagctggctttaggttta
tccgatcagcttccctctgctcaaaatcttctccaaggtcaaacacagttatcagttaat
cagcttcctgttccagcatctaatattgagcagcaagtcattgtcaatccgaagcttcat
gctttaggtttacacttgcatttccagagtgtacttccaattgcaatggatagagctatc
aaagaaatagtgtcgagtattgtgcagcgtagtgtttctatagcaactcagacaacaaag
gaacttgttttgaaggactatgccatggagccagatgagactcttatacgtaatgcagca
cacttaatggttgcaaggttggctgggagtctagctcatgtgacatgcaaggaaccgttg
cgtagctcaatatcaagccagctcaggagtacacttcagggttctagtctatcaagtgaa
ctccttgaagctgttcaaattgtgaccaatgacaatcttgaccttggctgtgcactgatt
gaacaagctgcaacagagaaggcgattcaaacaattgatggagagatagcccagcagctt
tctataaggaggaagcatagagagagtgttgggcctacattttttgatgctaacctgtat
gcgcaaggtcacatgggtgtgctaccagaggatcttcgtcctaagccaggtcgcctatca
caatctcagcagcgagtatatgaggattttgttcggttgccatggcagaatcggtcaacc
catagcacaaatgctgtgcctgttggtccttccatttcatctggcagtagtggcatgtcc
cggcaatttgcttcggcatctgtccaaataaacccgggcgtgtattcatctggccttgtt
ggcactggaattagtgctataccccagaatttagagattggctctgaggagatggataat
agttcgactcaacttcctagtttttctacaactcatattgcaaccgctgatggccttagc
cctcaaagtcttgaaaatgatactgttgcttcatatgcttcagtctcaactactgaactg
cacattgatccccccatctctgctaaagaatctggaagtggaccccagactccaaatcct
actttggcttctgatcgcgctggaagtaatgtcttagagccattgttgaccacaggcgat
gcattggataagtatcagactatttcagagaagcttgaaaatcttttgaccggtgatgct
atggaagcagaaatccagggggttatagctgaatttccggcagtcatcctcagatgcata
agccgagatgaggctgccttggctgtggctcaaaaggctttcaaaggcttgtatgaaaat
gcttctaacaatgctcatgtcagtgcttaccttgcaatcctggctgccattcgtgatgtt
agtaagcttgttgtcaaggagctaacgagttgggtgatatactctgatgaggaccggaag
ttcaataaagatattactattggtcttattcacagtgaattattaaaccttgctgagtat
aatgtccacatggcaaagcttcttgatgcaggaaggaataaggctgccatggaatttgtg
atttctcttattgaaacattggttgtcaatgattctaaagtcatatcagaactacacaat
cttgttgatgctctggctaagattgcctcaaggcctggatctcctgaatcattacaacag
ttggttgagattgctaagaatccctctggtaattctgctgctatatccggtgtcattgga
acagaggaaaatatcagatcatctaaagacaaaaaggctattgggctttctggagtgaac
agggacgaccacacttcaatggagttggtggatccagatcctactggttttcaggagcag
gtttctgtattgtttgcggaatggtaccaaatatgtgaacttccgggaacaaatgatgcc
gcatgtgctcgttacatcatacagttattccagagaggcctgctcaaaggggatgatatg
tcagatcgctttttccgtcggctcatggaactgtcagtgtcacattgcttatcctcggag
gtgataaattctggtccttctcagttgcatcagggacaacctctatctttccttgctatt
gacatctttgccaaattagtcttctcaatactgaagttttctcctgatcaaggatctagc
aaactctctcttctgcctaaggttcttgcagtggccgtgaaatttattcagaaagatgct
gaagagaagaggacatcctttaatccaagaccctattttaggttgtttgttaactggctg
ctggatctgtgttccttggaccctgttgttgatggagcaaattttctggttttgactgtt
atagcaaataccttccatgctcttcaacctctcaaagttccaggattcagctttgcatgg
ctagagttggttagtcatagaagctttatgccaaaattactcacaacaaacgcgcagaag
gggtggccttactttcagcgattgttagtagatctgtttcagttcatggagccatttctg
aggaatgctgaactgggtgaaccggtccattttctttacaaaggcacactcagggtgttg
ttggtgctactccatgattttccagagtttctatgtgattatcatttcagcttctgtgat
gtgatccccccaagctgcatacagatgcgaaatataatcctcagtgcatttcctcgtaat
atgaggctaccagatccttctactcccaacttaaagattgatctgctgacagagataagt
caatcgccacgtattcttgcagacgttgatgcagctcttagagcaaagcagatgaagaat
gatgttgatgagtatctaaagactaggcaacaagggtcctcatttcttactgaattgaag
cagaagctgctactgtctccaaccgatgcagcacgtgctgggacccattacaatgtccct
ctaatcaactcccttgtactttatgttgggatgcaggctattcagcagctccaggctaga
gcaccccctcattcacaatccatgactagtatgaccatgttcttggtcagtgctgctttg
gaaattttccagactttgatagcggatttggacaccgagggttgttatttattcctaaat
gcggttgctaaccaattacgttatccaaacaaccacacacattacttctctttcatcctt
ctctacctgtttgctgaatcaaaccaggaaatgatccaggagcaaatcactagagtactg
ttggagcgacttatcgttaataggcctcatccctggggtcttttaattacttttatcgag
cttattaagaatcccaggtataacttttggagccgatctttcacaaggtgtgcaccggag
attgagaaactcttcgaatcagtgtcaagatcctgcggtggcccaaaacctgtggatgat
ggtgtaggatctggtggaataccagataatatgcactaa
DBGET
integrated database retrieval system
