Ornithinimicrobium faecis: NF556_04400
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Entry
NF556_04400 CDS
T10132
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
ofa Ornithinimicrobium faecis
Pathway
ofa03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ofa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NF556_04400 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ofa03021
]
NF556_04400 (rpoB)
03400 DNA repair and recombination proteins [BR:
ofa03400
]
NF556_04400 (rpoB)
Enzymes [BR:
ofa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NF556_04400 (rpoB)
Transcription machinery [BR:
ofa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NF556_04400 (rpoB)
DNA repair and recombination proteins [BR:
ofa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NF556_04400 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
USQ80897
UniProt:
A0ABY4YWB3
LinkDB
All DBs
Position
960069..963554
Genome browser
AA seq
1161 aa
AA seq
DB search
MAASRTAKTTVSTARTASGRLSFAKIREPLEVPDLLALQTESFDWLLGNEDWQARVAAAK
DGGKYDVPDRSGLEDIFEEISPIEDFSGSMSLSFRDHRFEEQKYSIEECKERDMTYSAPL
FVTAEFINNTTGEIKSQTVFMGDFPLMTDRGTFIINGTERVVVSQLVRSPGVYFERSLDK
TADKDIYSTKIIPSRGAWLEFEIDKRDQVGVRVDRKRKQSVTVLLKALGWTEAQILEEFG
DYESIRATLEKDHTADQDEALLDIYRKLRPGEPPTKEAAQTLLDNLYFNPKRYDLAKVGR
YKINKKLGVEAPLNESVLGVDDIVATIKYLVALHAGEDSMEIVRNGQTEELRVEVDDIDH
FGNRRLRSVGELIMNQVRTGLSRMERVVRERMTTQDVEAITPQTLINIRPVVASIKEFFG
TSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRDRAGMEVRDVHPSHYGRMCPIETPEGP
NIGLIGSLASYGRINPFGFVETPYRKVIEGRVTDDIDYLSADEEDHFVIAQANAELTEDG
TFAEERILVRTKGGEATDVPAGDVDYMDVSARQMVSAATAMIPFLEHDDANRALMGANMQ
RQAVPLVRAEAPLVGTGMEHRAALDSGDVVRAAKAGVVQEVSADLVTVAHDDGTYQSYKI
SKFTRSNQGNCYNQQAKVNQGDRVEAGDLLADGPATDGGEMALGRNLLVAFMPWEGHNYE
DAIILSQRLVQDDVLSSIHIEEHEIDARDTKLGPEEITRDIPNVSDEVLADLDERGIIRI
GAEVRDGDLLVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSMKVPHGETGTIIGVKV
FDREEGDELPPGVNQLVRVYVANKRKITDGDKLAGRHGNKGVISKILPVEDMPFMEDGTP
VDIVLNPLGVPGRMNVGQILELHLGWAAAQGWEIAEGAEWANGIPADAHTAPPRSRVASP
VFDGATEHEIAGLLESTTPSASGERLIGESGKARLFDGRSGEPYPEPVSVGYMYILKLHH
LVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYALQELLTIKSDD
VTGRVKVYESIVKGDNVPEPGIPESFKVLIKEMQSLCLNVEVLSSDGTQIDLRESDQEVF
RAAEELGIDLSRREPSSVEEV
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
ttggctgcctcgcgcactgcgaagacgactgtgtccaccgctcggacggcttctggccgt
ttgagcttcgccaagatccgggagccgctggaggttccggatctcttggcgctccagacg
gagagttttgactggttgctcggaaacgaggactggcaggctcgcgtcgctgccgcgaag
gacggcggcaagtatgacgtccccgaccgctccggtctcgaggacatctttgaggagatc
tccccgatcgaggacttctccggctccatgtccctgtcattccgggaccaccgcttcgag
gagcagaagtactccatcgaggagtgcaaggagcgggatatgacctattccgctccgctg
ttcgtcaccgcggagttcatcaacaacaccaccggtgagatcaagtcccagacggtcttc
atgggcgacttcccgctcatgaccgaccggggcacgttcatcatcaacggcaccgagcgt
gtcgtggtgtcccagctcgtccgcagcccgggcgtctacttcgagcgctcgctcgacaag
acggccgacaaggacatctactccaccaagatcatcccgagccggggtgcctggttggag
ttcgagatcgacaagcgtgaccaggtcggcgtgcgcgtcgaccgcaagcgcaagcagtcg
gtcacggtgctcctgaaggccctgggctggaccgaggcccagatcctcgaggagttcggc
gactacgagtcgatccgcgccaccctggagaaggaccacacggccgaccaggacgaggcg
ctgctggacatctaccgcaagctgcgtccgggcgagcccccgaccaaggaggccgcgcag
accctgctcgacaacctctacttcaaccccaagcgctatgacttggccaaggttggtcgc
tacaagatcaacaagaagctgggtgtcgaggctccgctgaacgagtccgtcctgggcgtc
gacgacatcgtcgccaccatcaagtacctcgtcgcgctgcacgccggcgaggactcgatg
gagatcgtccgcaacggtcagaccgaggagctgcgcgttgaggtcgacgacatcgaccac
ttcggcaaccgccgtctgcgctcggtcggcgagctgatcatgaaccaggtccgcaccggg
ctctcgcgcatggagcgcgtcgtccgcgagcggatgaccacccaggacgtcgaggccatc
acgccgcagaccctgatcaacatccggccggtcgtcgcctccatcaaggagttcttcggc
accagccagctgtcgcagttcatggaccagaacaacccgctgtcgggtctgacccacaag
cgtcgcctgtcggcgctgggccccggcggtctgtcccgtgaccgcgccggcatggaggtc
cgtgacgtccacccgtcgcactacggccgcatgtgcccgattgagacccctgagggtccc
aacattggtctgatcggttcgctggcctcctacggccggatcaacccgttcggcttcgtg
gagaccccctaccgcaaggtcatcgagggtcgggtcaccgacgacatcgactacctgtcc
gcggacgaggaggaccacttcgtcatcgcgcaggccaacgccgagctcaccgaggacggc
accttcgccgaggagcggatcctggtccgcaccaagggcggggaggccactgacgtcccg
gccggcgacgtggactacatggacgtgtccgcacgtcagatggtgtccgcggccaccgcg
atgatcccgttcctggagcacgacgacgccaaccgtgcgctcatgggcgccaacatgcag
cgtcaggccgtgccgctggtgcgcgccgaggcgccgttggtcggcaccggcatggagcac
cgcgcggcgctcgactccggtgacgtggtgcgtgccgccaaggcgggcgtggtccaggag
gtctcggccgacctggtcaccgtcgcccacgacgacggcacctaccagtcctacaagatc
tccaagttcacccggtccaaccagggcaactgctacaaccagcaggccaaggtcaaccag
ggtgaccgcgtcgaggccggcgacctgctggccgacggtcccgcgaccgacggcggcgag
atggcactggggcgcaacctgctcgtggcgttcatgccgtgggagggccacaactacgag
gacgcgatcatcctctcccagcgtctggtgcaggacgatgtcctctcctcgatccacatc
gaggagcacgagatcgacgcccgcgacaccaagctggggccggaggagatcacccgggac
atcccgaacgtctccgacgaggtgctggccgacctggacgagcgcggcatcatccgcatc
ggtgccgaggtccgcgacggcgacctgctggtcggcaaggtcacgcccaagggtgagacc
gagctgaccccggaggagcgcctgctgcgcgccatcttcggtgagaaggcccgtgaggtc
cgcgacacctcgatgaaggtcccgcacggcgagaccggcacgatcatcggcgtcaaggtc
ttcgaccgcgaggagggcgacgagctccccccgggcgtcaaccagctggtgcgcgtctat
gtcgccaacaagcgcaagatcaccgatggtgacaagctcgctggccgccacggcaacaag
ggcgtcatctccaagatcctgcccgtcgaggacatgccgttcatggaggacggcacgccc
gtcgacatcgtgctcaacccgctgggtgtgcccggccggatgaacgtcggtcagatcctg
gagctgcacctcggctgggccgcggcgcagggctgggagatcgccgagggcgccgagtgg
gccaacggcatccccgccgacgcgcacactgccccgccgcgcagccgcgtggccagcccg
gtgttcgacggtgcgaccgagcacgagatcgccggcctgctggagtcgaccaccccgtcg
gcttctggcgagcgtctgatcggtgagtccggcaaggcccgtctgttcgacggtcgttcc
ggcgagccctaccccgagccggtctcggtgggctacatgtacatcctgaagctgcaccac
ctcgtggatgacaagatccacgcgcgcagcactggtccgtactccatgatcacgcagcag
ccgctgggtggtaaggcgcagttcggtggtcagcgtttcggcgagatggaggtctgggcc
ctggaggcctatggcgccgcctacgccctgcaggagctgctcaccatcaagtccgatgac
gtgacgggccgcgtgaaggtctacgagtccatcgtcaagggcgacaacgtcccggagccg
ggcatccccgagtccttcaaggtgctcatcaaggagatgcagtcgctctgcctgaacgtt
gaggtcctgtcctcagacggcacgcagatcgacctgcgcgagtccgaccaggaggtcttc
cgcgcagcggaggagctcgggatcgacctctcgcgccgcgagcccagctccgtcgaagag
gtatga
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