Oxalobacter formigenes: BRW83_1415
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Entry
BRW83_1415 CDS
T04835
Name
(GenBank) hypothetical protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ofo
Oxalobacter formigenes
Pathway
ofo03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ofo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BRW83_1415
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ofo03400
]
BRW83_1415
Enzymes [BR:
ofo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BRW83_1415
DNA repair and recombination proteins [BR:
ofo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BRW83_1415
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
ARQ46158
LinkDB
All DBs
Position
1486748..1487704
Genome browser
AA seq
318 aa
AA seq
DB search
MDMFDSRSAVPMLIGVESGPFDDEAWIYELKLDGERTLAYLDRNGTLLVNKRSVRLLAKF
PELATLNDSVSRRCILDGELIIVDENGHPDFEEVKRRSLMTRTMAIERAAAMRPVVFVAF
DILYDTDREIIHLPLMERKAILADVVRDNAQMSVARYVSTQGIAFYDLAKERRLEGIIAK
RKDSLYSPGKRTKDWVKIKNLMDDDYIICGYVSNAEYVVSLVLGQYDRSGRIIYKGRVTL
GKASEDFALIEKQPKVKSWPFPEKPPAYVDNATWIRPKLVCKVAFMARNHNGLMRQPVYR
GLRPDKTAKETREPEIMD
NT seq
957 nt
NT seq
+upstream
nt +downstream
nt
atggacatgttcgactcacgatctgctgtccccatgctgatcggggtcgaaagcgggcct
tttgacgatgaggcctggatttatgaactgaaactggacggcgaacggacactggcctat
ctggacaggaatggcactttactggtcaacaagcgttctgtcaggctgcttgccaaattc
cccgaactggctaccctgaatgactctgtttcccgacggtgcattctggacggcgaactg
atcatcgtcgatgaaaacgggcatccggatttcgaggaagtgaaacgccggtccctaatg
acccggacaatggcgattgaacgggccgcagccatgcggcctgtcgttttcgtcgctttt
gacatcctttacgatacggacagggaaatcattcaccttcccctgatggaacggaaagcc
attcttgccgatgtagtccgggacaatgcgcaaatgtccgtcgcacgatatgtttcaacg
cagggaatcgctttttacgatttggcgaaagaaaggcgtctggaaggcattatcgccaaa
cgcaaggacagtctctattcgcccggcaaacggacgaaagactgggtcaagatcaagaac
ctgatggacgacgattacattatctgtggttatgtttccaatgctgaatacgttgtcagt
ctggtattgggacaatatgaccgttccggacggattatctacaagggacgtgtgaccctg
ggaaaagcgtctgaagatttcgcgctgatcgaaaaacagccgaaagtgaagtcctggcct
tttcctgaaaagccgcccgcgtatgtcgacaatgccacctggatccgtccgaaactggtt
tgcaaggtcgctttcatggcgcgaaaccataacggcctgatgcggcagccggtatacagg
ggcttgcggccggacaagactgccaaagaaacccgtgaaccggaaatcatggactga
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integrated database retrieval system
