Otolemur garnettii (small-eared galago): 100960534
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Entry
100960534 CDS
T07855
Symbol
COL13A1
Name
(RefSeq) collagen alpha-1(XIII) chain isoform X2
KO
K16617
collagen type XIII alpha
Organism
oga
Otolemur garnettii (small-eared galago)
Pathway
oga04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
oga00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
100960534 (COL13A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
oga00536
]
100960534 (COL13A1)
Glycosaminoglycan binding proteins [BR:
oga00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100960534 (COL13A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
100960534
NCBI-ProteinID:
XP_012656772
Ensembl:
ENSOGAG00000004498
LinkDB
All DBs
Position
Unknown
AA seq
662 aa
AA seq
DB search
MAAERAHKAAASGVRGPGELDAPGTVALATARAERSARLPGPGSCGLLALALCSLALSLL
SHFRTAELQARVLRLEAECGEQQMETAILGRVNQLLDEKWKLHSRKRREAPKTSPGCNCP
PGPPGPTGRPGLPGEKGAIGMPGRVGAPGDAGLSIIGPRGPPGQPGTRGFPGFPGPIGLD
GKPGHPGPKGEMGLTGPRGQPGPQGQKGEKGQCGEYPHREYLSSMPAALRSSQIITLKGE
QGQTGIQGPPGPPGPPGPSGPLGHPGLPGPMGSPGLPGPPGPKGDPGIQGYHGRKGERGM
PGMPGKHGTKGAPGIAVAGMKGEPGTPGIKGEKGAAGSPGLPGFLGQKGEKGDAGNSIGG
GRGEPGPPGLPGPPGPKGEAGIDGQAGPPGRQGDKGEPGAAGEQGPAGPKGSKGEPGKGE
MVDYNGNINEALQEIRTLALMGPPGLPGQIGPPGPPGQKGEIGLPGPPGHDGEKGPRGKP
GDMGPPGPQGPPGKEGPPGMKGESGHSGEKGEKGDAGDTGSPVSGPPGPEGPPGPPGLQG
VPGPKGEAGLDGVKGEKGVQGEKGDRGPLGLPGTPGPVGVPGPAGPKGERGSKGDPGMTG
PTGAAGLPGLHGPPGDKGNRGERGKKGSRGPKGDKGDQGAPGLDAPCPLGEDGLPVQGCW
NK
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atggcagcggagcgcgcccacaaagcggcagcctcgggtgtccgcggccctggggagctg
gacgcgccggggacggtggcgctagctacggcgcgggcggagcgcagcgcgcggctgccg
ggcccggggtcgtgcgggctgctggctctggccctctgctcgctggcactcagcctgctc
tctcactttcggaccgcggaactgcaggcccgggtgctgcgcctggaagcagagtgcggg
gagcagcaaatggaaacggctattttgggacgagtcaaccaactgctggacgagaaatgg
aagctccactctcggaagcgccgggaggccccgaagacgtctccaggatgtaactgccca
ccaggacctcctggtcctactggaagacccggactcccaggggaaaaaggtgccattggg
atgcctggacgtgtgggggcccccggagatgctgggctgtccatcatcggtccccgaggc
ccccctggtcagccaggtactcgaggttttcctggatttccgggtcccattggactggac
ggcaaaccgggccacccgggaccaaagggggagatgggtctgacaggcccccgaggacag
ccgggacctcaaggacaaaaaggagaaaaggggcagtgtggagagtacccacaccgggag
tacctaagcagcatgccagcagccctgcgctccagccagataattaccctgaagggtgaa
cagggccagaccggcatccaaggtccaccagggcccccaggcccccctggaccgagtgga
cctctggggcacccaggactgccagggcccatgggctcacccggcttacctgggcctcct
ggacctaagggagacccaggaatccagggctaccatggccggaagggagaacggggcatg
ccagggatgccgggcaagcatggcaccaagggggctccgggaatcgccgtggctgggatg
aagggtgagccggggaccccaggaatcaagggcgagaagggggctgcgggatcccctggg
ctgcctggcttcctggggcagaagggagagaaaggcgatgctggcaactccattggagga
ggcagaggggagcccggccccccagggctccctgggcccccaggaccaaagggagaagca
ggtatcgatggccaggctggccccccaggacggcaaggagacaagggggagcctggagca
gctggagaacagggaccagctggccccaagggctccaagggagaaccagggaaaggagag
atggtggattacaacgggaacatcaacgaggcacttcaggagatccgaacgctggccttg
atgggccctcctggtcttcctgggcaaattggaccacccggacctccaggccagaagggg
gagattggactgccaggccctccaggacacgatggggaaaagggacctcgaggcaaacca
ggagacatgggcccccctggtccccaaggccccccaggaaaggagggccctccaggaatg
aagggagaaagcgggcactcaggagagaagggagagaaaggggatgctggagacacaggc
tcgccggtttctgggccaccagggccagaggggcctcccggacctccggggctccaaggt
gttcccggaccaaagggcgaagcagggctggatggagtgaaaggagaaaagggtgtccag
ggagaaaaaggagaccgagggcccctgggactacctggtactccaggaccagttggagtt
ccaggcccagcaggaccaaagggtgaaaggggcagcaaaggagaccctgggatgacagga
ccaacgggagcagctgggcttcctggtttacatggaccacccggggacaagggaaaccgg
ggggagagggggaagaaaggctctagagggcctaaaggggataagggagaccaaggagcg
cctggattagatgccccctgcccattgggtgaagatggcttaccagtccagggctgctgg
aacaagtga
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