Oryza glaberrima (African rice): 127752420
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Entry
127752420 CDS
T08853
Name
(RefSeq) probable pectate lyase 5 isoform X1
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
ogl
Oryza glaberrima (African rice)
Pathway
ogl00040
Pentose and glucuronate interconversions
ogl01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
127752420
Enzymes [BR:
ogl01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
127752420
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
127752420
NCBI-ProteinID:
XP_052133722
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Position
10:complement(16307679..16313726)
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AA seq
491 aa
AA seq
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MAGPDESTRITLLLVAATLLLLPPPLAASLNSSLPDPAAVVADFHSKVATSRRRMQEAAS
GGGGGGGGCLTGNPIDDCWRCAGTDWRQDRQRLADCGIGFGRNAMGGKGGPVYVVTDPSD
GDPVNPAPGTLRYGAIQEGPLWIVFAGDMTIRLNEELLVNSYKTIDGRGANVHVGAGGAC
ITLQYVSNVIIHNIHVHDCVPAGNANVRASPTHYGWRTRSDGDGISLYSARDVWVDHCAL
SRCADGLIDAIMGSTAITVSNSYFSHHNEVMLLGHSDGYLPDSAMQVTIAFNHFGIQLVQ
RMPRCRRGYFHIVNNDYTAWEMYAIGGSASPTINSQGNRYIAPADPNAKEVTKRVDTEEG
QWAGWNWRTEGDMMVNGAFFVPSGEGLEAIYDKASSTDPKSSALVDQLTAGAGVLGGPRD
NGEAAAYAGVNYAGVGTGGGGGGGAGAGGMGYGYLGMVYGSGGNWSCRADLTLQLTSLFL
ALFALICLHPL
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atggccgggccggatgaatccacccgcattaccctcctcctcgtcgccgccaccctcctc
ctcctcccgccgccgctcgccgcctccctcaactcctccctccccgaccccgccgccgtc
gtcgccgacttccacagcaaggtggcgacgtcgcggcggcggatgcaggaggccgccagc
ggcggcggcggtggcggcggagggtgtttgacggggaaccccatcgacgactgctggcgg
tgcgccgggacggactggaggcaggaccggcagcggctggcggactgcggcatcgggttc
ggccgcaacgccatgggcggcaagggcgggccggtgtacgtcgtcaccgacccctccgac
ggcgacccggtgaaccccgcgccggggacgctccggtacggcgccatccaggagggcccc
ctctggatcgtgttcgccggcgacatgaccatccgcctcaacgaggagctcctcgtgaac
agctacaagaccatcgacggccgcggcgccaacgtccacgtcggcgccggcggcgcgtgc
atcacgctccagtacgtctccaacgtcatcatccacaacatccacgtccacgactgcgtc
cccgccggcaacgccaacgtgcgcgcctcgccgacgcactacgggtggcgcacccgctcc
gacggcgacggcatctcgctctactcggcgcgcgacgtgtgggtggaccactgcgcgctg
tcgcgctgcgccgacggcctcatcgacgccatcatggggtccacggcgatcaccgtgtcg
aacagctacttctcgcaccacaacgaggtgatgctgctggggcacagcgacgggtacctg
ccggactcggcgatgcaggtgaccatcgcgttcaaccacttcgggatccagctcgtgcag
cggatgcctcggtgcaggagggggtacttccacatcgtcaacaacgactacacggcgtgg
gagatgtacgccattggagggagcgcgagccccaccatcaacagccagggcaaccgctac
atcgcccccgccgatcccaacgccaaggaggtgacgaagcgggtggacacggaggagggg
cagtgggcggggtggaactggaggacggagggggacatgatggtcaacggcgccttcttc
gtcccctccggcgagggcctcgaggccatctacgacaaggcctccagcaccgaccccaag
tcgtcggcgctcgtcgaccagctcaccgccggcgccggcgtcctcggcggccccagggac
aacggcgaggcggcggcgtacgccggcgtcaactacgccggagttggaaccggcggcgga
ggcggtggcggcgccggtgccggcgggatggggtatggttatctcgggatggtctatggc
agcggcggcaattggagctgccgagctgacctgacactgcaattgacttcattgtttctt
gcactctttgctctcatatgcttgcacccattgtga
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