Oryza glaberrima (African rice): 127753077
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Entry
127753077 CDS
T08853
Name
(RefSeq) uncharacterized protein LOC127753077 isoform X1
KO
K14311
nuclear pore complex protein Nup188
Organism
ogl
Oryza glaberrima (African rice)
Pathway
ogl03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
127753077
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ogl03019
]
127753077
Messenger RNA biogenesis [BR:
ogl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
127753077
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RICTOR_M
Motif
Other DBs
NCBI-GeneID:
127753077
NCBI-ProteinID:
XP_052134494
LinkDB
All DBs
Position
10:3425722..3454770
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AA seq
1968 aa
AA seq
DB search
MASGGASSAPATASTPAAAAATTTTSKTASASLWWDPFIDLSDDLDRAAAASPSVPDALA
ERIKAHHAWLRVSVSMFVKPSDASRGALDASEVVVGEHRLAVKPELKAAALRLSKCMNLD
EVQSYILVKRTSENTPRALVADTEEFLRLVSVQYYLERQCLLKCIRRIFVHANDCSDSID
AVREEASVLVREEVEQRLLSIVRDSLASAFSVKGGAELTISWLEETLIEINLIFDILFLF
FYDNLSRCNGGLWIMLCSIFKDMLSGSYDVGKFAVSVEAKNSFHYAKAQLLFILIQTLDF
ESLLRMVRDEVPFSGGYSTFSVVDILEMDVEVSKLPEFAAVESGPLILAWAVFLCLVMSL
PGSNTNLDIDHTSYAQRSFEFAPFNFLQGVLCSSIFKESDGPVSGFRGILRTFISAFVAS
YEISYQTEDSSLGMILNILCEVYDGEESLCMQFWDKDSFIDGPIRSILHMVEKEYPFQIS
ELIRFLSAVCHGSWPAQCVFNYLERMNGVTTLYAVPRSDTDNVNYHDQIEIHSPISIFGI
EGITIPGGSHGYILKVLEDDVALVRWEFPHSGVLFLLVILAQDLHACNYEEACAIMDLLY
KMVSSNRDLCLAFLHADKSLAVQASQNLGYIDKHVRIDIAKIFCTSIFKYVEDFNNACVM
SKTLGMLAEMLSCVPYHVFNVALDCGFFITQSGGASSDWLLSGALARMLFATSEDSGDCS
SLTTTVLDFAIQVLRKGAAADDIISSFIIFSVQYIMVNHMNWKYKSYSRWKITLKVFDLV
KSCIQVKSFSSKLGGIIWEILLYDSSIHSVLLHILSMSTQLLEHSHGSYCHDLKEIEDIQ
LVLCCGLDIVFYMLSNLPEELAPSPPFVTMVLSSSSKPLPFVTAAISLMSFQNPAIQVAA
ARVFSMLCFTAYKAQPQLMENAYFVVNGSEIWRLQTSISCILDEVDKVNEVVAIFNLLSS
AARYQPALLISLIEQSTRAQADSDDSAHEQSSKYFVLNPSGSNPRLVEQILGYIGRSTEL
MDRSPSILSGVLDLLKALWESGAQFMYILEKLRSSRTFWENLSCCIRAAFASYPIDSVET
VDEKKSLRYCCLGTIFEIMSYELFLQGKLLTETKTYDPAPVGSKEQKEPSVAPCPSDIVL
KWFDSTTMEDLINHLSSNGYQNDLLHRAKVASCLCIIRLLTKLSSGDTGSLSFSLVKKIQ
LISSKLLQHRAFVALLSQYALHGYSSEQDITNLIISDLYYHIHGELEGRPITPGPFQELL
CFLLEFKVFEHNPSEQLQKSFPAANGVSLFDVPHIRDELGLELWNHSDWKTYKEVAEKML
DIMHKANLMKCQVDAKLCALRSFITFLSVCTGTSSYKKFGLPGGGISITTTQSAVRCACK
SLQSAVDSLPPEVDNSEVLFPPLSGQVELLLTITRILLDHAKQSKSSRHLYPVIVLLIKT
SGASTSFLFNLMLSSPALKQPVKSLLVLLLSLFEFIYKKVDMKDGSEDANIFGELSLLSM
SLLPVLCKLAESREYFDLAIASMDIILKGFLPSNVWVPILQKHFRLQVILQKCQSGALLC
TQVILNFLLTMGRTKDGAKILQSANIFAFIKVLLSQMSLDDSCLRNSLSTQTKDVKIWGL
GLAIVSSLNHCMDDDMSRNSVANSTISFLSGQVPLMSSYLSAQSVNPHQSKKRTLLQKSQ
TSLSALSLTENILTLLCILAKYHFPRDTGMKEVDSELREIIIHLLAFISRGSERTGDSPN
WNSSFGCPPIIKEEMKLNEEPPLIRSKYGWFRFAASCTLSTPSVSGPPNAGLSLVIRDKN
PADSDSMKQTRFTEMLAVQIYRIAFLIMKFLCSQAKEAVRRAEELEFLDLAHFPELPMPD
ILHGLQDQVVSIVTEVLEANVSTALNTETERVCQLLLVILETSLYMELCVSQSCGIRPVM
GRFEDFSKGIKAMVHASEKHSSFKPLVRSLAQITTLLYPGIVQNNNLM
NT seq
5907 nt
NT seq
+upstream
nt +downstream
nt
atggcgagcggcggcgcctcctccgccccggccaccgcctccacccccgccgccgccgcc
gccaccaccaccacaagcaagaccgcgtccgcctcgctgtggtgggacccgttcatcgac
ctctccgatgatctcgaccgcgccgccgcggcgtccccttccgtcccggacgccctcgcg
gagcggatcaaggcccaccacgcgtggctccgcgtgtcggtgtccatgttcgtgaagccg
agcgacgcgtcgaggggcgcgttggatgcctccgaggtggttgttggggagcaccgcctc
gccgtcaagcccgagctcaaggcggccgcgcttcgcctgagcaagtgcatgaacttggat
gaggtgcaatcgtacattctggttaagagaacttcagaaaacactccaagagctcttgtt
gctgatactgaagagtttcttcgcctggtatctgtacaatattacctggagcgtcaatgc
ttgctgaagtgcatccgaagaatctttgttcatgcaaatgattgttctgattcaattgat
gccgttagagaagaggcctcagttttagttagggaagaggtggaacagagactactatcc
attgttcgagattcccttgcatctgcattctctgtcaaagggggagctgaattgacgatt
tcttggctggaagaaacactgattgaaattaacctgatttttgacatcttgtttcttttt
ttctatgataacctttcaaggtgtaatggtgggctgtggataatgttgtgttcgattttt
aaggacatgctatctggttcttatgatgttggaaaatttgctgtatctgttgaagcaaaa
aattcgtttcattatgctaaagctcagctgctgtttattctcattcaaaccttggacttt
gaaagtctactccggatggttcgtgatgaagttccttttagcggagggtattccacattt
tctgttgttgatattcttgaaatggacgtcgaagtatcaaaattacccgaatttgcagca
gtagaatcaggaccacttattcttgcttgggcagttttcctttgcctggtcatgtccctt
ccaggaagtaataccaatttggacattgatcatacatcttatgcccaacgctcctttgag
tttgctccattcaattttctacaaggagttctgtgctcaagcatcttcaaggaatcagat
ggtcctgtttctggttttcggggtatattgagaacattcatttcagcatttgtggcttca
tatgagatctcttatcagacagaagatagttctcttggcatgattttaaatattctatgc
gaagtttacgatggagaggaatctctctgcatgcaattctgggacaaagatagttttatt
gatggtccaatcaggtccattcttcatatggtggaaaaggagtatcctttccagatatca
gaattgattcgcttcttatcagccgtttgccatgggagttggcctgctcaatgtgtattt
aattaccttgagaggatgaatggggtgactacgttatatgcagtccctaggagtgataca
gacaatgtgaactaccatgatcaaattgaaattcatagtccaatcagcatttttggtatt
gaaggaattacaattcccggtggaagtcatggctacatcttgaaagttcttgaagatgat
gttgcattagttcgctgggagtttccacattcaggtgtcctctttttgcttgtaattttg
gcacaagatcttcatgcatgcaattacgaggaagcttgtgctataatggacctactatat
aagatggtatcatcaaacagggatttgtgccttgcttttctgcatgctgacaagtcgcta
gctgtccaagcgtcacagaacttggggtatattgacaagcatgtcaggattgatattgct
aaaattttttgcacatccattttcaaatatgtggaagattttaataatgcttgtgtaatg
tccaaaacccttggcatgctggcagaaatgctcagttgtgttccataccatgtgttcaat
gtggcgttggactgtggcttcttcattacacaatctggtggtgcttcaagtgattggctt
ctttctggtgcgctagcaagaatgctttttgctacctctgaggatagtggagactgttct
tcacttacaactacagtgcttgattttgccatccaggttttgcggaaaggagctgctgct
gatgatataatatcatcattcattatattttcagttcaatacatcatggttaatcatatg
aactggaaatacaagagttatagtcgctggaagataacccttaaggtgtttgatttggta
aagagctgtattcaagtcaaatcattctcatcaaagcttggtggcatcatttgggaaatt
ctattgtatgattcttctatccacagtgttcttttgcatattttgtccatgtcaacgcaa
ttactggaacactcgcatggcagctattgtcatgatcttaaggagattgaagatatacag
cttgtcctttgctgtggacttgatattgtattttatatgctgtccaacttaccagaggag
ttggctccaagtccgcctttcgttactatggttttgtcgtcctcgtcaaaaccgttgcct
ttcgtcacagctgcaatatcattgatgtcctttcagaatccagctatacaagttgcagcc
gctagagtattttcaatgctgtgcttcactgcttataaagcacaacctcaactcatggaa
aatgcctactttgttgttaatggttcagagatttggagattgcaaacaagtatttcctgc
attcttgatgaggtagacaaagtcaatgaggttgttgctatattcaaccttctgtcttct
gctgctcgttatcagcctgctcttcttatttccttgatagaacagagtacaagggcgcaa
gcagattctgatgattccgctcatgagcagagcagtaaatattttgttctgaacccttca
ggaagcaatcctagacttgttgagcaaatcttgggttatattggacgatccactgagctt
atggatagatctccttctatattatcaggtgttcttgatctactgaaggcattatgggaa
agtggtgcccaatttatgtacattttagagaaactgagaagttctagaacattctgggag
aacttatcatgctgtattcgtgctgcttttgctagttaccctatcgacagcgttgagact
gttgatgaaaaaaaatctttgagatattgttgtcttggtacaatttttgagatcatgtca
tatgagttgttcttgcaaggaaagttgcttacagaaacaaaaacttatgatcctgcccct
gttggttcaaaggagcaaaaagaaccttctgttgcaccttgtccaagtgacatagtgctc
aaatggtttgatagcacgactatggaggatttgataaatcatctatcaagtaatggatac
caaaatgatcttcttcatcgtgctaaggtagcatcctgcctttgcattatccgtctatta
acaaagctgtccagtggagatactggaagcttgtcattctcgctagtgaagaagattcag
ctcatatctagtaaattgttacaacaccgtgcatttgtagctctactgtcacaatatgcc
cttcatggttacagcagtgaacaagatattaccaatttgataattagtgatctttactat
catatacatggagaactcgaaggtcgtccaattactcctggtccgtttcaggagctgcta
tgcttccttctagaatttaaagtttttgaacacaatccttcggagcaactgcagaaaagt
ttcccagctgccaatggcgtttctttgtttgatgttcctcacattcgtgatgaacttggc
cttgaactttggaatcattcagactggaagacttataaagaagtagctgaaaagatgctg
gatatcatgcataaagcaaacctgatgaaatgtcaagttgatgcaaagctttgtgcgttg
aggtcattcataacatttctgtcagtatgcactggaacaagttcatataagaagtttggc
ttacctggtggagggatttcaataacaactacacaatcagcggttagatgtgcatgcaaa
tctctgcagtcagctgttgactccctccctcctgaggttgataacagtgaagttttgttt
cctcccttgtctggacaagtggaattgttgcttactatcaccaggatcttacttgaccat
gctaaacaaagcaaaagttcaaggcatctttatcctgttattgtactactcataaaaact
tcaggtgccagcacttcctttttgtttaatctcatgctgtccagtcctgctcttaagcaa
ccagtgaagtccctccttgttctgcttttgtcattatttgaattcatttacaagaaggtt
gacatgaaagatggatctgaagatgccaatatatttggggagttatcccttttaagtatg
agcttgttacctgtattatgcaaattggcagagagcagagaatattttgatcttgctatt
gcatcaatggacataatattgaaaggctttttgccttctaatgtatgggtgcctattcta
caaaagcattttcgtctccaggttatattgcaaaaatgccaaagtggggctttattgtgt
actcaagtcatattgaatttcctcttgactatggggcggacaaaggacggtgctaaaatt
cttcagtctgccaatatttttgctttcataaaggtccttctgagtcagatgtctttggat
gactcctgtttgagaaattccttgagcacccaaacaaaggatgtgaaaatttggggtttg
ggtcttgctattgtctcctctttgaaccattgcatggatgatgatatgtcccgcaacagt
gttgcaaacagtactatcagcttcctttcagggcaagtgcctttgatgtcgtcttatcta
tctgcacaaagtgttaaccctcatcagagcaagaagaggacactgttacaaaagtcacag
acatcactttcagctctcagtcttactgagaatatcctcacacttctctgtattttggcc
aagtaccatttcccacgggacacaggtatgaaggaagtagattcagaattaagggagatt
attatccacctgcttgcatttataagcagaggtagtgaaagaaccggtgattccccaaac
tggaactcatcctttggttgtcctcctattattaaagaggaaatgaagcttaatgaagag
ccaccacttattaggagcaaatatggatggttccgatttgctgcaagttgtactttgtca
actccatctgtctctggtcctcccaatgcaggattgtcacttgtgattagagacaaaaat
ccagcggattctgattctatgaagcagactcgttttacagagatgttagcagtacaaatc
tataggattgcttttcttattatgaagttcctatgcagtcaagcaaaagaggcagtaaga
agggcagaagaactggagttccttgaccttgctcatttcccagaacttccgatgccagat
attcttcacggcctgcaggatcaagtggtttctattgtcactgaagtattagaggcaaat
gtatctactgcactcaataccgagacagagagggtgtgccaacttctgttggtgatactt
gaaacatcactttacatggaattgtgtgtatcccaatcatgtggcatcagaccagtgatg
ggtcgttttgaagatttctccaagggaattaaggctatggttcatgcttctgagaagcat
tccagttttaaaccattggtcaggtcacttgcccaaattaccactcttctttatcccggg
attgtacaaaataacaatctcatgtaa
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