Oryza glaberrima (African rice): 127753080
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Entry
127753080 CDS
T08853
Name
(RefSeq) tetratricopeptide repeat protein SKI3 isoform X1
KO
K12600
superkiller protein 3
Organism
ogl
Oryza glaberrima (African rice)
Pathway
ogl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127753080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ogl03019
]
127753080
Messenger RNA biogenesis [BR:
ogl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
127753080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_16
TPR_14
TPR_11
TPR_8
TPR_17
TPR_12
TPR_CcmH_CycH
TPR_6
TPR_7
TPR_19
TPR_9
ARM_TT21_C
NatA_aux_su
TPR_15
BTAD
Motif
Other DBs
NCBI-GeneID:
127753080
NCBI-ProteinID:
XP_052134497
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Position
10:complement(20711442..20719210)
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AA seq
1196 aa
AA seq
DB search
MPETAAEANLRKQLEQTLAGEPSSPLHHYNLGLFLWDRAEAAAREEGEGEEEVRRLRAAA
AERFLAAAKLDPNDGVPFRFLGHHYARAGDAQRAAKCYQRAATLNPDDAEAGEAVCDLLD
LEGKESLEIALCKEAAGKSPRAFWAFRRLGYLQVHQKKWSEAIQSLQHAIRGYPTCADLW
EALGLAYHRLGMFTAAVKSYGRAVELDGSKVFALIESGNIQLMLGYFRKGVEQFRSALEM
APQNHSAYFGLASALLAWARQCVMTGAFGWAASLLKEACEAAKVCTSLTGNLSCVWKLHG
DAQLALARCFPWDDGNIKGGMDDGTFRTTVLEWRNTCLLAANGAKFSYQRALHLTPWEAN
IHNDTAICLDLIYTIEENNSLDPITWELPEKMSLGGLILEPVNKDFWVTLGSVSSNQALK
QHSFIRALHLDMSLSEAWAYLGKIYRHSGDKQLARQAFDRARSIDPSLALPWAGMSAENY
HQPGDGPVNECFESCLRAVQILPLPEFQIGLGTIAARSGELLSPQVLMAVRQAVQRAPHY
PESHNINGLVSEVRSDFQSAIASYRRAKFALDMMRNSKADCRCHIADISVNLARSLCKAG
LATEAVRECEELKRQGFLNDDGLQIYALSLWKLGRHDEALSVSRNLAENLSSMKQESATA
ALGFICTLTYNISGKDSAAAVIHKLPGQLNYSTQLKFIISALDALQPNKRFQLPQLSMPP
RLTSYEVMSEVHSNIALGNAIAGESDKFLRVDGGLSYLKKVLHMYPDCSLVRNQLGSLLL
SSEDWMASHKAVRVTSLSRGYTSDRGLRSPHQIQACAAVSCYATCTSYPKFSFPTCEDQY
LSGYNAICRLQRWVHLEPWNQDARRLLVLTLYQKAREEKYPKHICTILKRLILQVLSSGS
NSQDNKVVQYGNYLLLLVASEVSLQSGDHGNCIAQATEALGVTSSCVDSFFAHLQLCRAY
VIQGNLLNSRSEYMKCLQNRTDTEIGWVVLKQLASICSLEGTPDEIEIHLRGCVERKGSN
ASKWTSLFYLACAQCSVWNEDFASAEKAIAQACAEGDPDSCVLFLNGAICMDIAWRFAAP
QFIARAASSLRKAQQKSLASLPIVSLLLAQAEGSLGSKAKWEKNLRLEWFSWPPELRPAE
LYFQMHLLATQSNAATSQQNQLVETMQTPEKWLLRAIHLNPSCSRYWTALMQLVYV
NT seq
3591 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaaacggcggcggaggccaacctccgcaagcagctggagcaaaccctcgccggc
gagccatccagcccgctccaccactacaacctcggcctcttcctatgggaccgcgcggag
gcggcggcgagggaggagggcgagggcgaggaggaggtgaggcggctccgtgcggcggcg
gccgagcgcttcctcgccgcggccaagctggaccccaacgacggcgtccccttccgcttc
ctcggccaccattacgcgcgcgccggcgacgcgcagcgagcggccaagtgctatcagcgg
gcggcgacgctcaaccctgatgatgccgaggctggggaggcggtctgtgatttgctagat
ttggagggcaaggaaagcttggagatcgctttgtgcaaggaggcagctggcaagtcaccc
cgggcattttgggcgttccggaggttggggtacttacaggttcatcagaagaaatggtca
gaggctatacagagccttcagcatgcaatacgaggttacccaacatgtgcagatttatgg
gaagcactcggtctggcataccaccgtttgggcatgtttactgcagcagtaaagtcgtat
gggcgagctgttgaactggatggttccaaggtctttgcattgatagaaagtggaaacatc
cagctaatgcttggttattttagaaagggtgttgaacagttccgctctgccttggagatg
gctcctcaaaatcattccgcgtactttggtcttgcttctgcattgcttgcttgggcaagg
cagtgtgtaatgactggggcctttggctgggcagctagtctgttgaaggaagcatgtgaa
gctgccaaagtttgtacttctttgactggaaacctttcctgtgtttggaaactgcatgga
gatgctcagctcgcacttgcaagatgctttccatgggatgatggtaatatcaaggggggt
atggatgatggtactttcaggactactgtacttgagtggagaaatacatgtttgttggct
gcaaatggtgcaaagttctcgtaccaacgagctttgcatctcactccctgggaagctaat
attcacaatgacactgctatatgtcttgatctcatttataccattgaggagaataacagt
ctagatcccataacttgggaactgccagagaaaatgtcgttgggtgggttgatactggaa
ccagtcaataaggatttttgggttacattgggctcggtgtcaagtaatcaagctttaaaa
cagcattcttttatcagagcactgcatcttgatatgtctctatctgaagcatgggcatac
cttggaaagatttacaggcattcaggtgataagcagttggcaagacaagcatttgatcga
gctcgaagcattgatccttcactggccttgccatgggcaggaatgtcagctgaaaattac
caccagcctggggacgggccagtaaatgaatgttttgaaagctgcttgcgggctgtgcag
atacttcctcttccagagttccagattggtcttggaacaattgcagctcgttccggtgaa
cttctatcacctcaggtattgatggctgtaaggcaagctgttcaacgtgcacctcattac
cctgagtcgcacaacataaatggcttggtttctgaagtgcgatcagacttccaatctgca
attgcatcgtaccgacgagcaaaatttgctttagatatgatgcgcaactccaaagcagac
tgcagatgtcatattgctgatatttctgtgaatcttgcccggtcactatgtaaggctggt
cttgcaactgaggcagtgcgagagtgcgaagaattgaaaagacaaggatttctgaatgat
gacggattgcagatatatgctctttcattatggaaacttggtcggcatgatgaagctctt
tcagtatcaagaaacttggctgaaaacttatcgagtatgaagcaggagagtgcaactgca
gctttaggattcatatgcacgttgacatacaacatctctgggaaggactctgcagctgcg
gtcattcataaactgcctggtcaactcaattacagcacacagctgaaatttattatctct
gcattagatgctttacagccaaacaagcgttttcagttaccgcagctgagtatgcctcct
aggcttacatcttatgaagtcatgagtgaagtccactcaaatattgctcttggaaatgct
attgctggggaatcagacaagtttttaagggttgatggtggcctatcttacctgaaaaag
gttctacacatgtatcccgactgcagtttagtaagaaaccaacttggatctctgctactg
tcaagtgaagattggatggcttctcataaagcagtaagggttacttcattgtcccgggga
tacacatccgacaggggcttaagatctccacaccaaattcaagcatgtgcagcagtttct
tgctatgctacctgcacttcttacccaaagttctcctttccaacatgtgaagatcaatac
ctaagcggatacaatgcaatatgccgcctgcaaaggtgggttcatctagaaccgtggaac
caagatgcacgtcgcctccttgtacttaccctttaccaaaaagcacgtgaagaaaagtat
ccgaaacatatctgcaccattttgaagaggctgattttgcaagttctctccagtggtagc
aattcacaagacaataaggtggttcagtatgggaactacttgctacttcttgtggcttca
gaggttagtttgcaatctggtgaccatggcaactgtattgctcaagctactgaagctctt
ggagtaacttcttcgtgcgtggattctttctttgcacacttgcaactgtgtcgggcctat
gtgatacaaggcaatcttttgaactctaggagtgagtacatgaaatgcctgcaaaaccgt
acagatactgaaattggctgggtagtacttaagcaacttgcatctatatgttcactggag
ggtacccctgatgaaatagagatacatctaagaggatgcgttgaaaggaaaggtagcaat
gcatccaaatggacgtctcttttttatctagcatgcgctcagtgttcagtatggaatgag
gactttgcaagtgctgagaaagctattgctcaggcatgtgctgaaggggatcctgacagc
tgtgtcttatttctcaacggcgcaatttgtatggacattgcttggaggttcgcggcccct
caatttatagcccgtgcagcttccagcctcagaaaggcacagcagaaatcacttgcttct
ttacctattgtgtccctcttactggcccaagcagaaggcagccttggctccaaagccaag
tgggagaaaaaccttcgtctagagtggttctcatggcccccagaattgaggcctgccgag
ctctatttccagatgcatcttctggcgacgcagtcaaatgcagcaacttcccagcagaac
cagctagtggaaaccatgcaaaccccggagaagtggcttctcagggcgatacacctgaac
ccgtcgtgctctaggtactggacggctctgatgcaactcgtctacgtgtaa
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