Oryza glaberrima (African rice): 127753542
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Entry
127753542 CDS
T08853
Name
(RefSeq) uncharacterized protein LOC127753542
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
ogl
Oryza glaberrima (African rice)
Pathway
ogl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127753542
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ogl03019
]
127753542
Messenger RNA biogenesis [BR:
ogl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
127753542
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
127753542
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Glyco_hydro_84_hel
CSM2
Motif
Other DBs
NCBI-GeneID:
127753542
NCBI-ProteinID:
XP_052134985
LinkDB
All DBs
Position
10:complement(21155301..21174539)
Genome browser
AA seq
2413 aa
AA seq
DB search
MIPFNSAVAEDVRSLVQGVDDSTFDSTHRELCQLADCSPDGCSLLLQVCLDEVLLNADVA
KSSRLKPELLSTVFKYCLDKPYFSTSFCEALKTVHVSDMFLVKLSNELNLSAGERVGVGL
ALSDSGNLGLITKGQKFSIAEIEEICANPAHVLTNDQIHDIVVFLHQTDGLSKHMDSFTN
IISLLNVKEMPFYVPAPIKEGNARPTISSRHMELYTGSLDDDFDSLLSEIGKEISMADII
TELGYGCTSDIAHCKEILSLFEPLDDMGISKLLGAVVCTRVGLGEAHNTYSTFMSAVGNS
QPSDSSQFTAWNIDVLVDSINEIAPRTNWITVVENLDHEGFCIPDEAAFCLLMSIYSRAC
KDPFPLHAVCGSLWKNTEGQLSFLKHAVAAPTDTFTFKHCSRKMVFPEFANCMQGNQAWY
CLDLLEVLCQLAELGYATMVRSMLDYPLIHCPDVLLLGVSHINTPYNLLQYEVLSCVFPM
ILKDTTYSSLMNSLWHVNPYLTLRGFVDSHSDANCLLRTVEICQDLTILSAVLDSTPFAF
SIKLATVAFRQSHSNLEKWLVEKLTAQGETFLEECVKFLKEIMSNTTYETAEGAVQQPQV
MILDICRESCPLIIKVLQSHSGQLLSNQLVEELRRVEAVHESRNHGVVGRDAPTSEGGPD
DIEAQANIYFHQMFSGQISVDAMVQMLARFKESTNKRELSIFNCMVSNLFEEYKFFPKYP
DTQLKLAAVLMGSLIKHQLVAHLGLGIALRSVLDALRKSIDSKMFMFGTTALEQFMDRLI
EWPQYCNHILQISHLRATHAGLVAAIERVLAKISSSQNEPNVGSMLSADQHGSSSIGNME
ASEASWQLINPTPTQLERSHQQRHQGFLGERSKGSTNIIQAKNILSSGQMPLASSPGDLA
VNLKAATTPSSQASPHHSTTVSAPLQPTGFLRSRSSAPSGIRQPSFTTGFGAALNIETLV
AAAERRDTPIEAPPSEVQDKIFFMINNISTSNMEAKAREFNEVLQEQYYPWFAQYMVMKR
ASIEPNFHDLYLKFFDKVNSKSLNKEMVKATYENCKVLLQSDLIKSSSEERSLLKNLGSW
LGKFTIGRNQTLRAKEIDPKILIIEAYERGLMIAVIPFTSKILEPCQSSIAYRPPNPWTM
GILSLLVEIYNLPNLKMNLKFDIEVLFKNLSVDMKDVKPSSLLKDRIRQIEGNPDFSNKD
VSASQAPVVAEVSSGVMPTINHVEPQPEINSTSRATSLPNMLSQYAAPLRLPTNNMVEDD
KAALIMPEQVSSHGLSQVSPSQTPSLSSSSFSLSQLMAAIPRADIYFRINEKLSSFGSLQ
YSKIMDMALDKAIKEIIGPVIQRSVTIASRTTKELILKDYAMEADDSAVSRSAHLMVGTL
AGSLAHVTSKEPLRVALSSHLRSLIQGITNNTESTEQIMLILVNDNLDLGCALIETVATR
KAVEMIDGEIKQPFSQLRRQKELLGSAYYDAFPYTQGLKRVPDALRPKPTGHLSAAQRRV
YEDFITVWHSQSSQNAGGSATATAMAVAPSNSSVPRVYSPNSALTDSSSFSSHFASASQT
TELVHEESDRNAHLSSLSSKIGASDTSTQVIGTTNVASVFPPMVPNDLPVGEPTTTNKDL
VTSAPLSPTTAVDRMGSVFAEPLNTSDALERYQQVSQKLDTLIAKDGKDAEIQSVIAEVP
DILLRCVSRDEAALAIAQKVFRSLYDNASNSNYVTWLLAALVAIRDVCKLVVKELTSWVI
YSDEDKKFNIDIIIGLIRSELINLGDYNVHLAKIIDGGRNKAATEFAISLVQTLITQESI
SISEVYNIVDALSKLAIRPSSPESLQQLIEIARSFASVKDENIRQSRDKKVLSGRPLVNK
EENNANDVAFTDAVGFQEKVAVSFSEWCNICDHPTMGDSAYTHYIVQLQQDGLLKGDDLT
DRFYHILTELAVAHSVVSEQVVAPGGISQQPTQQLQISYFSIDSYSKLVALVVKYSSVDI
GPSKGSLFNKILSVIVRIIQRDAEEKKVSFNPRPYFRLFINLLSELTTSDLHHDSANFQV
LTAFANAFHVLQPLRVPAWSFAWLELVSHRSFMPKLLLCNAQKGWPFFQRLLVDLFKFME
PYLRNAELGQPIHLLYKGTLRVLLVLLHDFPEFLCDYHFSFCDVIPPSCIQMRNVILSAF
PRNMRLPDPSTPNLKIDLLAEISIPPRIMSDVDGALKSKQMRTQVDEYLKRPDGSFLTDL
KQKLLLPQNEANIAGTRYNVPLVNSLVLYVGMQAVQQLQLNKMNASASAQQMNQSQLDVQ
IETATELFRNLVMNSDTEGRYLLLNAIANQLRYPNNHTHYFSFIILYLFSEANQEIVQEQ
ITRVLLERLIVNRPHPWGLLITFIELIKNPRYSFWARSFTRCAPEIEKLFESVARSCGGK
GGDDGVGLPDGGH
NT seq
7242 nt
NT seq
+upstream
nt +downstream
nt
atgatccctttcaattccgccgtagccgaggatgtccgctccctggtgcagggcgtggac
gactccaccttcgactccacccaccgcgagctctgccagctagcggactgcagtcctgat
ggatgcagtttgctgcttcaagtttgtttggatgaagtgctgctgaatgccgacgtggca
aagagctctcgattgaaacctgagctcttatcaactgttttcaagtattgtctggataaa
ccatacttcagcaccagtttttgtgaagcactgaagacagtacatgtcagtgatatgttc
cttgtaaaattgtcaaatgaacttaatttatctgctggagagagggttggagttgggctt
gccctatcagattctggaaatctaggcttgattacgaaagggcaaaagttctcaatcgct
gaaatcgaggagatatgtgcaaatccagcccatgttttaacaaatgatcaaattcacgat
attgttgtgtttcttcaccagactgatggcctctcaaagcatatggattctttcactaac
atcatctccctattaaatgtcaaagagatgccattctatgttcctgccccaattaaggaa
ggcaacgctcggccaacaatttcttcaaggcacatggaactatacactggtagcttggat
gatgattttgattcccttctatctgaaattgggaaagaaataagcatggctgacatcatt
actgaattaggctacgggtgtacttcagatattgctcattgtaaagaaatactgtcacta
tttgagcctcttgatgatatgggaatctccaagttgcttggagcagttgtttgcactcgt
gttggtcttggtgaagctcataatacatattcaacgttcatgtcggccgttggcaacagc
caaccaagtgactcatctcaatttactgcatggaatattgatgttctcgtggattcaatt
aatgaaattgccccaagaactaattggattactgtagtggaaaatcttgatcatgagggt
ttctgtatccctgatgaagcggcattttgtttgctgatgtctatatattctcgggcctgc
aaggatccatttcctcttcatgctgtctgtgggtcactgtggaagaatacagaaggacaa
ttatcattcttgaaacatgcggtggctgcgccaactgatacatttacattcaaacattgt
tccaggaagatggtatttccagaatttgctaactgcatgcaaggcaatcaggcttggtac
tgcctggaccttctagaggttttatgccaacttgctgaacttggctatgcaacaatggtt
cggtcaatgcttgactacccactgattcattgccctgatgttttacttcttggtgttagc
cacatcaatactccatataatctcctccagtatgaagtattgtcttgtgttttccctatg
atactgaaggacactacatacagtagtcttatgaactctctctggcatgtcaacccttac
ctcactcttcgtggatttgttgattcacattccgacgcaaattgccttctcagaactgtt
gagatatgtcaagacctaacgatcctatccgcagtccttgattccaccccgtttgcattt
agcatcaagcttgctacagttgcttttaggcaaagtcatagcaatcttgagaaatggttg
gttgaaaagctgactgctcaaggagagacttttcttgaggaatgtgtgaaattcttgaag
gaaattatgagcaacacaacttatgagactgcagaaggtgctgtccaacaacctcaagtg
atgattttggatatttgccgagaatcttgccctctaattataaaggttctgcaatctcac
tcgggccagctgttatctaaccaacttgtggaggaactaaggagagtggaagcagtgcat
gaatcaaggaatcatggtgttgtaggaagggatgcccctacttctgagggaggtcctgac
gacattgaagcacaggcaaatatatattttcaccagatgttttctggacagataagcgtt
gatgctatggtacaaatgcttgcacgtttcaaagaatctacaaacaagagggagctatca
attttcaattgcatggtttcaaatttgttcgaggagtacaaattcttcccaaagtatcca
gatacacaacttaagttagcagctgtgctcatgggatctctcattaagcatcaacttgtg
gctcacctgggacttggaattgctctacgtagtgttcttgatgccttgcgtaaatctatc
gattcaaagatgtttatgttcggaacaacagcgctagagcagtttatggatcgtctaatc
gagtggccacagtactgtaaccatatattgcagatatcacatcttcgtgcaacacatgcc
ggattagttgctgcaattgaacgagtgctcgccaagatatcgtcaagtcaaaatgagcca
aatgtaggcagcatgctttctgcagatcagcatggttcatcatctattggaaatatggag
gcttctgaagcatcgtggcagctcatcaatccaactccaacacaacttgaacggtcacac
caacagaggcaccagggtttccttggggagaggtccaagggctctacaaacatcattcaa
gccaaaaacattctttctagtgggcaaatgccacttgcttcatcacctggtgatttggct
gtcaatctaaaggctgccacaacaccatcgtcacaagcttctcctcatcattctaccact
gtatcagctcctttacaacccacgggctttctgcggtctagaagttctgctccttcaggc
attcgacaaccttccttcaccacaggatttggagctgctctgaatattgaaactctagtt
gccgctgcagaaagaagagatacaccgattgaggcccctccttctgaagttcaagacaag
attttcttcatgatcaataatatttccacttccaatatggaggctaaggcaagagaattt
aacgaggttttgcaagaacagtattatccctggtttgcgcaatatatggtcatgaaaagg
gcaagcattgaaccaaattttcatgatttatacttgaagtttttcgacaaagtcaactca
aaatcattgaataaggaaatggttaaagctacatatgagaactgcaaggtcttattacag
tccgatctcataaaatctagttcggaagaacgttcattgcttaaaaatcttggtagttgg
ctaggaaaattcactataggaaggaatcaaacattacgagcaaaggaaattgatcccaaa
attcttattatagaggcatatgaaaggggtttgatgattgctgttataccattcacatca
aagattcttgaaccttgccagtcgagtatagcataccgtcctccaaatccttggacaatg
ggtattcttagccttctcgttgagatctataatctacctaatctcaagatgaacctgaag
tttgacattgaggtcttgtttaagaatctaagtgttgatatgaaagatgtgaaaccatct
tctcttctgaaagaccgtattcggcaaatagagggaaatccagatttttcaaataaagat
gttagtgcatctcaagcaccagtagttgctgaggtttcctctggcgtcatgcctacaata
aaccatgtggaaccacaaccagagataaatagcacttcccgtgctacaagccttccaaat
atgttgagtcagtatgcagcacctcttcgccttcctacaaacaatatggtagaagatgac
aaggccgctttaatcatgcctgaacaggtttcctctcatggtttgagccaggtttcgcca
tcacaaacaccatcactatcatcgtcttcattttctcttagccagcttatggcggcaatt
ccacgtgcagatatatatttcagaattaatgaaaagcttagctcttttggctcgttgcag
tatagcaaaatcatggatatggctttggataaggccatcaaagagattataggtcctgtc
attcaaagaagtgttacaatagcgagccgaacaactaaggaacttattctaaaggattat
gcaatggaagcggatgatagtgccgtatctcgttctgcacatttgatggtcggtacacta
gctggaagtcttgcccatgttacatccaaggaacctcttcgtgttgctttatcatctcat
cttcgtagtcttattcagggcataactaataatactgaatccacagagcagattatgctt
attcttgtcaatgataatctggatcttggatgtgccctaatagagaccgttgcaacacgc
aaggctgttgagatgatcgatggggaaatcaagcagcccttttcacaactaaggagacaa
aaagaactacttggatctgcatattatgatgcttttccttacactcaaggtcttaagcgt
gttccggatgctcttcgtcctaagcctactggccatttatctgctgcccaacgacgagtg
tatgaggacttcattactgtatggcacagtcagagtagtcaaaatgcgggtggttcagct
actgctacagcgatggcggtcgctccaagcaattccagtgtacctcgagtttacagtcca
aattcagcactgacagactccagtagcttttcctcccattttgcatctgcaagtcagact
acagaactggtacatgaagaatcagatcgcaatgcacacctttcaagcctttcttcaaaa
attggcgcgagtgacacatctacccaagttattggaaccacaaatgttgcatctgttttt
ccgcctatggttcccaatgaccttccagtgggtgaaccaacaaccacgaataaagatctt
gttacttcggcaccactttcacctacaactgctgttgatcggatgggatctgtttttgcg
gaacctttgaatactagtgatgcgctggagaggtaccaacaagtttcacaaaagctggat
actttgatcgctaaggatggcaaagatgcagaaattcagtctgtcattgcggaggttcca
gacatcttactcagatgtgtcagtcgagatgaagctgccttggctattgcacagaaggtt
ttcagaagtttgtatgacaatgcatcaaacagtaattatgtcacatggctcctagcagct
ttggtcgcaatacgtgatgtttgcaaacttgtcgtcaaggagttaacgagctgggtaata
tattctgacgaagataagaagtttaacatcgacataattattggactaattcggtctgaa
ctgattaatcttggggattacaatgttcatttggcgaagattattgatggcggaagaaac
aaggctgcaaccgagtttgctatatcacttgtccagacattgattacccaagaatctatt
agcatctcagaggtttataatattgttgatgccttatcaaaacttgcaatcaggcccagt
tctcctgaatcgctgcagcagttgattgaaatcgctagaagttttgcttccgtgaaggat
gaaaatattagacagtcaagggataaaaaggttttatccggtcgtcctttggtgaataaa
gaggaaaataatgctaatgatgttgcgttcactgatgctgttggttttcaggaaaaggtc
gcagtatcattctctgaatggtgtaatatatgcgatcatcccactatgggtgattcagca
tacactcattacattgtgcagctgcaacaggatggcttgctaaagggagatgatttgacc
gaccgcttttaccatattctcacggaacttgctgtggcacactctgtagtctctgagcaa
gtagttgctcctggcgggatttctcagcagccaacgcagcaactccagatttcatacttc
tcaattgattcatattcaaagcttgtggcactggtggtaaagtactcttctgtggatatt
ggaccgagtaaaggaagcctttttaataagattctttctgttatagttaggattattcaa
agagatgctgaagaaaagaaagtttctttcaatcctcggccgtattttcggttgttcata
aatttgcttagtgagcttactacttctgaccttcaccatgatagtgctaattttcaggtg
ttgacagcatttgccaatgcattccatgtgcttcaacccttgagagttcctgcatggagt
tttgcttggcttgaattggtaagccacagaagcttcatgccaaagctattgctgtgcaat
gcacagaagggttggccattcttccagaggttgcttgtcgatttgttcaaattcatggaa
ccatatttaagaaatgctgaactgggacaacccatacacctgttgtacaaaggaactttg
agagtgttacttgtgctactgcatgacttccctgagttcctttgcgattaccacttcagt
ttctgtgatgtcattccccccagctgcattcaaatgcgcaatgttattcttagtgctttt
ccacgcaatatgagacttccagatccctctactccaaatttgaagattgatcttcttgct
gagatttcaattcctccaagaatcatgtctgatgttgatggtgccttaaagtcaaagcaa
atgaggacacaggttgatgagtacctcaagaggccagatggatcctttttaactgattta
aagcagaagttacttctgccgcaaaacgaagcaaatattgctgggactcgttacaatgta
cctcttgttaattcacttgtgctctatgtgggcatgcaggctgtgcaacagttgcagctt
aataaaatgaatgcatcagcgtcggcgcagcaaatgaaccaaagtcaactggatgtccag
attgagacagctacagagctcttcagaaatcttgtaatgaattcggatacagaaggtcgc
tacctcctcctcaatgcgattgccaaccagctgcgctatccaaacaaccacacacactat
ttttccttcattattctttacttgttttctgaggcaaaccaggaaatagtccaggagcaa
ataactagggtacttctggaacggctaatagttaaccgccctcacccgtgggggctacta
attactttcattgagcttataaagaatccacgctacagtttttgggctcgatcatttact
cgctgtgcacctgagatcgagaagctgttcgagtctgtcgcaaggtcttgtggaggaaaa
gggggagacgatggagttggtctccccgatggtggccattaa
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integrated database retrieval system
