Oryza glaberrima (African rice): 127765359
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Entry
127765359 CDS
T08853
Name
(RefSeq) uncharacterized protein LOC127765359 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
ogl
Oryza glaberrima (African rice)
Pathway
ogl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127765359
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ogl03019
]
127765359
Messenger RNA biogenesis [BR:
ogl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
127765359
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
127765359
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
Motif
Other DBs
NCBI-GeneID:
127765359
NCBI-ProteinID:
XP_052146197
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All DBs
Position
3:124165..141481
Genome browser
AA seq
2049 aa
AA seq
DB search
MISEISATEVRLLLLQAAADSNLDSVRRRLCQLVDSGLDGCILLLQVCLDQVLLKPHQLD
KSKHDLLSAVFRYCMDKTYFTTCFCEALGRMPATHGDGFLKTLSNVLELSPAERVGIGLA
LSDSEDSGLKLKGQQFSIAQIEGLCSNLLQSPSNDQIHDIVIFLHQTDGLSKHMDTFNTI
ISLFKTKETPFFAPTPFNKCDIQSRHLDMCFGSMDYDSELLLSEIEKEITMADIVTELGY
GCTVDTTHCKEILSIFEPLDDVAVSKLVGAVIGTHNVLVEAHNTYAMFVSAISNMNDSPQ
LTTWNTDVLVDSINELAPSTNWVHVMENLDHEGFNVPDEAAFCLLMSIYAHACKEPFPLH
AVCGSLWTNTEGQISFLKHAVSVPTDTFTFSHCSRKLAFPDLACPIQDNHAWFCLDLVVV
LCQLAEVGHTVSVQSMLEYPLQHCPELLIVGLGHVNTAYNLLQYEVQSRVFPAILKDATK
SNVVNYLWQINPSLTLRGFVDAHSDPDCLLRIVDVCRDLKILSAVLDSTPYAFSIKLAVA
ASRIDHSHLEKWLTAKLRVCKDDFLQDCVSFLKETMSNASCALEGTIQESQAVVMNIYRE
YCPHFIKILQYQSGHLLSNQKLDELRKSYISYELRNHDSVVRGIPTSDNVEMEADAYFHQ
MFSGQISIAAIVQMLSRFKNSPEKREQLIFKCMISNMFEEYKFLPKYPDKQLKLSALLFG
SLIKHRLVTHLELGIALHAVLDALHKSVDSKMFMFGTTALEQFMDRLIEWPDYCNHILQI
SHLCGAHTEMVSAIERALARISSSQNELSVNISVSSEQHVTGLAPIEPIEASDQPSSLPS
PHQLSSVPSTMHATVFSHPQSSCSGLPRQPSNSTGFGTPLNIGTLVAAAEQRYTSIESPP
SEVQDKIMFMINNISISNMEAKAKECIEVLPECYYPWFAQSMVMKRASIEPNFHDLYLKF
FVKVNSRFLNKEVLKATYENCKILLRSDLIKSSSEERSLLKNLGSWLGKFTIGRNQALLA
KEIDPKVLIVEAYEKGLMIAVIPFTSKILEPCRSSIAYRPPNPWTMGILSLLAEIYNLPN
LKMNLKFEIEVLFKNLDVDLKDVNPTSLLKDRVCEVEGNPDFSNKDVAASQTQISSGISR
STNHVELQSVISSTSHAVSLPNYATPHLPSNSMVEDDNVAFMIPKHVSSHTLTQVSPSET
ALASQSPFSLTQLVKLIPHDEIRCKISSKLGSLGRQLQYSKIMDTALDKAIKEILCPVVE
KSVGTAIQNTKKLILKDYALESDNNTIKSSVHSIARTIAGNLAYANCKEPLCVALTDHLQ
SQIQTLTSNNKTIKQLIDVLINDNLDLGCRIIKSVAMCKAIEMIDEEITESFPLQKKQRE
AAGSAYCDAFTHAQGRFAHEPEALRPKHEHLSVAQQVYEDYVHVWQSHSQHVDASCFGQS
GKATCSSNFIVPRAYSPNSASATSSDCTAAQTAPFIYKLTELLSEELIAEPSSVCPAQVG
LCDSSALHGGPSGVTSTFPPENNFHVERLFNDWCHTCDHPSSADVAYGRFVMHLQQIGVL
MGDDITERFFHIFTELAVKHSLVPNQIVATGGVSQKSSQQLKISYFPIDSFSKLVAMVLK
YSSAETGPNKCSLLPKILLVAVRIIQRDSEEKKASFNPRPYFRLFISLLYDLISSDLHSD
GANFQVLIAFANAFHALQPLRIPSWSFAWLELVSHRTFMPNLLMCDSRKGWPFFQRLILD
LFKFMEPYLRNVELGEPMCLMYKGTMRVLLILLHDFPEFLCNYHFSFCDMIPSSCIQMRN
VILDAHPQDMRVVDPASPNLKIDLLPEISMAPQIMSDVEGALKSKLMKTEVDEYFKKSEG
SLFLSDLKQKLLLPQNETSVAGTRYNVPLINSLVLYVGIQGLQQQQTESSASGPAIHTAH
MDIFRTLMADLDTEGRYLVLNAIANQLRYPNIHTHCFYFIILHLFSEATQEIIQDQIMRV
ILERLVVRRPHPWGLQMTLVELIKNPRYKLWSRPFIRCGPQIDKVLIEFVDMLDDPRLTS
LYSSFRSIN
NT seq
6150 nt
NT seq
+upstream
nt +downstream
nt
atgatctccgaaatctccgcgacggaggtgcgcctcctcctgctccaagccgccgccgat
tctaacctcgattccgttcgccgccgcctctgccagttagtcgactccggtctggatgga
tgcattttgcttctccaagtttgtttggatcaagtgctcctcaaacctcaccagctggac
aaatctaaacatgatcttttatctgccgttttcagatactgtatggataaaacatacttc
accacctgtttttgtgaggctcttggacggatgcctgccacccatggcgatggcttcctc
aaaaccttatcaaatgtcctggaactctcaccagctgagagagttggcattggacttgcc
ctgtcagattctgaggattcaggcctcaagctcaaagggcaacagttttcaattgctcaa
attgaggggttgtgttcaaatcttcttcaatcgccatcaaatgaccaaattcacgacatt
gtcatctttcttcaccagactgatgggctgtcaaagcatatggatacttttaataccatt
atatctctattcaaaaccaaagagacaccgttttttgctcctaccccatttaacaagtgc
gatattcagtcaaggcatctggacatgtgctttggcagcatggattacgattctgagttg
cttctgtctgaaattgagaaagaaattaccatggcagacatcgtaactgagttgggttat
ggatgcacagttgataccactcattgtaaggaaattctttccatattcgagcctcttgat
gatgtagcagtatcaaagttggttggggcagttattggcactcataatgtccttgtggag
gcccacaatacatatgctatgtttgtatcggctattagcaacatgaatgattcacctcaa
ttgactacatggaacactgacgttcttgtggattcgatcaatgaacttgcccctagcact
aactgggtgcatgtgatggaaaatcttgatcatgagggtttcaatgttcctgatgaagca
gccttttgtttgctgatgtctatatatgcccatgcttgcaaggagccttttccacttcat
gctgtttgtgggtcattgtggacgaatacagagggtcaaatttcattcttaaagcatgca
gtttccgttcctactgatacatttacattttcgcattgttcgaggaagctggcatttccg
gacttggcctgtcctattcaagacaatcatgcttggttctgccttgaccttgtggtggtt
ttatgccaacttgctgaagttggacacaccgtgtcagtacaatcaatgctggagtatcct
ctacaacattgtcctgaactcttaattgttggtcttggacacgttaatactgcgtataat
ctcctccaatatgaagtgcagtctcgtgtatttcctgccatactgaaggatgctacaaaa
agcaatgtggtgaactatctctggcagattaacccatccctcactcttcgaggatttgtt
gatgctcattctgatccagattgtcttctgaggattgttgatgtgtgtcgagacctgaag
atcctatctgctgtgcttgattctaccccttatgcattcagcattaaactggctgttgct
gcctctaggatagaccatagccatcttgagaaatggttgactgcaaagttacgtgtctgc
aaagacgattttcttcaggattgtgttagtttcttgaaagaaactatgagcaatgcatct
tgtgctctagaaggtacaattcaagaatctcaagctgttgttatgaatatatatcgggag
tattgtcctcactttataaagattcttcagtatcagtcagggcatctcttgtccaatcaa
aaattggatgaactgagaaaatcatatatttcttatgagttgagaaatcatgattctgtt
gtaagggggatccctacttcagataatgttgaaatggaggcagatgcttattttcaccag
atgttttctggacagataagcattgctgcaattgtacagatgctatctcgcttcaaaaat
tctccagaaaaaagggagcaattgatttttaagtgtatgatatcaaatatgtttgaagaa
tacaaattcctcccgaagtatcctgataagcagcttaaactgtcagctcttttgtttgga
tctcttattaagcatcgacttgtgactcaccttgagctcggaattgctctacatgctgtt
cttgatgccttgcacaaatctgttgattcaaagatgtttatgtttggcacaacagcattg
gaacagtttatggaccgtcttatagagtggccagactactgcaatcatatattgcagatt
tcacatctttgtggggcacacactgaaatggtctcagcaattgagagagcccttgctagg
atctcatcgagccagaatgagctcagcgttaacatctcagtctcttctgagcagcatgtc
actggtttggcaccgattgaaccaatagaggcttctgatcaaccatcttcattaccttcc
cctcatcaattgtccagtgtgccatctactatgcatgctactgttttttcacatcctcaa
agttcctgctcagggttgcctcgacagccttccaattctacaggatttggaactccttta
aatattgggacacttgtagcagcagcagagcaaagatacacatccattgagtctcctcca
tctgaagttcaggacaagatcatgtttatgattaataatatatcaatctcaaacatggag
gctaaggcaaaagaatgtattgaggtactcccagaatgttattatccttggtttgcacaa
tccatggtcatgaaaagggcaagcattgaaccaaattttcatgacttgtatttgaagttc
tttgtcaaagtgaactcaagattcttaaacaaagaagtactgaaggctacatatgagaac
tgcaagatattgttaagatcggatcttatcaaatctagttctgaggaacgctccttgcta
aaaaatctgggaagctggctaggaaaattcaccatcgggaggaaccaggcattactagct
aaggaaattgacccaaaagttcttattgtagaggcatatgagaaaggactgatgatagca
gtcattccattcacttcaaagattcttgaaccttgccggtcaagtatagcataccgtcct
ccaaatccctggacaatggggattcttagtctgcttgctgagatctataatctaccaaac
ctcaagatgaatctaaaatttgagattgaggttctgtttaagaaccttgatgtggatctg
aaagatgtaaacccaacttccctccttaaggatagagtatgtgaagttgagggaaatcca
gatttttcaaacaaagatgttgctgcatctcaaacccaaatctcttcgggcatcagtcgc
tcaacaaaccatgtggaactgcagtcagttatcagtagcacttcccatgctgtgagcctt
ccaaattatgcaactcctcatcttccttcaaatagcatggtagaagatgacaatgttgct
ttcatgattcctaagcatgtttcctcgcatactttgacccaggtttcaccgtcagaaaca
gcattggcatcacaatctccattttctcttactcagcttgtgaaattgataccacatgat
gagatacgctgcaaaataagttcgaaacttggctctcttggtcgacaattgcaatacagc
aaaatcatggacacagctttggacaaggctattaaagagatattgtgccctgttgttgaa
aaaagtgtgggcacagcaatccaaaatacaaaaaaacttattctgaaggattatgcactg
gagtcagataacaataccataaaatcttctgtacattcaatagccaggacaatagctgga
aatctagcctatgctaattgcaaggaacctctttgtgttgcactaacagatcatcttcaa
agtcagattcagacgctcactagtaacaacaaaactatcaagcaactaatcgatgttcta
atcaatgataacctggatcttggctgcagaattattaagtctgttgcaatgtgcaaggct
attgaaatgattgacgaagaaataacagagtcttttccactacaaaagaaacaaagggag
gcagctggctctgcatactgtgatgcttttacccatgctcagggtcgatttgcacatgaa
cctgaagcactgcgtcctaaacatgagcatctatctgttgcccaacaagtgtacgaggac
tatgttcatgtatggcagagccatagccaacatgttgacgcttcatgttttggtcagtct
ggtaaagctacttgctcaagcaattttattgtacctcgagcatacagtccaaattcagca
tcagcgacctccagtgattgtactgctgctcaaactgctccatttatatataaattgaca
gaactgttgtctgaggaattgatcgcagaaccttcgagtgtttgtcctgctcaagttggt
ctctgtgactcttctgctctacatggtggacccagtggtgttacatcaacttttcctcca
gagaacaattttcatgttgagcgcctatttaatgactggtgccatacatgtgatcatcca
agttctgctgatgtggcatatggccgttttgttatgcatctgcaacagattggcgtgttg
atgggagatgatattactgagcgcttcttccatattttcaccgaacttgctgttaaacac
tctctagtccccaatcagattgttgctactggtggagtgtctcagaagtcatcacaacaa
ctcaaaatttcatatttcccaattgattctttttcgaagcttgtagctatggtgctcaag
tactcatctgctgaaacaggaccaaataaatgcagccttcttcccaagattttgttagtg
gcagttaggatcattcagagagattctgaagagaagaaagcatcattcaatccccggcca
tactttcggctttttataagtttgctatatgatcttatttcttctgatctccatagtgat
ggtgctaatttccaggttttgattgcatttgcaaatgcattccatgcactgcaacccttg
agaattccttcctggagctttgcttggcttgagttggtgagtcacagaactttcatgcca
aatctgttgatgtgcgattcgagaaaagggtggcctttctttcagcgtctaattcttgat
ctgttcaaattcatggagccatatttgagaaatgttgaacttggagaaccaatgtgtctt
atgtacaaaggaactatgagggtgctacttatactactgcatgactttcctgaatttctg
tgcaattaccacttcagtttctgtgacatgattccttccagttgcattcaaatgcgcaat
gtcattcttgatgctcatccacaagacatgagagtggtagatccagctagtcctaatttg
aagattgatctgttacccgaaatttcaatggctccacaaatcatgtcggatgttgagggt
gctctgaaatcaaagctgatgaagactgaggttgatgagtacttcaagaaatcagaaggc
tctttgtttcttagtgatctgaagcaaaagttattgctgccacaaaatgaaactagtgtt
gccgggacacgctacaatgttcctctcattaattcgcttgttctctatgtcggtatccaa
ggtttgcaacagcaacaaacggagtctagtgcatctggtccagcaatccatactgcccac
atggatattttcagaactcttatggcagacttggacacagagggccggtaccttgttttg
aatgcaatagctaaccagctgcgttaccctaatatccatacacactgcttctacttcatc
atcctgcatctgttttcagaagctacccaggaaattatccaggatcagataatgagggtt
atcttggaacgtctagtagtgagacgtcctcatccttggggcttacaaatgactttggtt
gaactgattaagaatccacgttacaagctgtggagccgaccttttatacgctgtggacca
cagattgacaaggtgctgatcgagtttgttgatatgttggatgacccgagattgacctct
ttatactcgtcttttcgctcaattaattga
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integrated database retrieval system
