Oryza glaberrima (African rice): 127773833
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Entry
127773833 CDS
T08853
Name
(RefSeq) SNF2 domain-containing protein CLASSY 4-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
ogl
Oryza glaberrima (African rice)
Pathway
ogl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
127773833
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ogl03400
]
127773833
DNA repair and recombination proteins [BR:
ogl03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
127773833
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
DEAD
Motif
Other DBs
NCBI-GeneID:
127773833
NCBI-ProteinID:
XP_052155981
LinkDB
All DBs
Position
5:16520784..16526537
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AA seq
1447 aa
AA seq
DB search
MDRAARLARRRRGGGVTVAESRMVRGRRRGGDAGPVVVIDVEDDGEDAADDSAGGGGGAA
AAVKRRVVVPGAVATRTRSRRMAMAQQAPVTPPAAAEEAPSRRRKRKGAASAEAGGGGPS
KRRVRSSGSAGGRGARKRKEAEADEEEAEAEAEEEAEAEAGTPARGESMEVSQVDGGGSS
GRADDASHNGNGESRVCNADGIDQASEERPSVAGGDLIEEEHCGNGEASVAGGDRIEEHC
GNVEAGVANSNRDGGEIIAGEGTEDRGNTELAVVDPVHEELASDEDDYDDEMLEEKLVGD
VIRAYSNGADLDTNGVDWEAEDEMEFADLDTNVVDWEAEDEMEFDDDNDNDADDDGDNFG
GDADEGDKSVQMHDFSKVETQDLVSHNVNVSEVRPHEDEEAIKDEMESKGKGSLSFNEGS
SYIEILDSDEEVKVVNDTGNALRRKPLVPAKLPIVPSCVAWRTRSSWGMKEERISYNTYF
EVLSDEPKEDDDDTEVELDDEEDDENDDDCNSASCDEEDEEEEEEREEEEEEAQRRKQKK
GIDSSDDEMIDDAVDCGIDWEEDYPEVDFTRPLTFQKDGSEAPVGSEAFTEQQKRSRFTW
ELERRKKLKLGMMTNHRLYERDLESDSNSSDSSQNRKNGCQGSGDHRTGRKRKNPLSKSG
KKSSRMLKRQSLMKLLMDKMCSNDDGKSTPFDQKPQIEYSFKDLHPLVFSFGDDDPSPTD
RSEQDAALDMLWADLDFTLESENIGTYYDDEGQEDTLLDHALAPITPCSRGKHEFIIDEQ
IGIRCKYCSLVNLEIRFILPLLASNFAEKPAWRNSSCLKTALMCPDLYEQTGTGDGQSQD
FHINGTVWDLIPGVIADMYQHQREAFEFMWTNLVGDIRLNEIKHGAKPDVVGGCVICHAP
GTGKTRLAIVFIQTYMKVFPDCRPVIIAPRGMLFAWEQEFKKWNVNVPFHIMNTTDYSGK
EDRDICRLIKKEHRTEKLTRLVKLFSWNRGHGVLGISYGLYMKLTSEKVGCTGENKVRTI
LLENPGLLVLDEGHTPRNERSVIWKTLGKVKTEKRIILSGTPFQNNFLELYNILCLVRPR
FGEMFLTKTRVGRRHCVSKKQRDKFSDKYEKGVWASLTSNVTDDNAEKVRSILKPFVHIH
NGTILRTLPGLRECVIVLKPLPLQKSIIRKVENVGSGNNFEHEYVISLASTHPSLVNAIN
MTEEEASLIDKPMLERLRSNPYEGVKTRFVMEVVRLCEALKEKVLIFSQFIQPLELIKEH
LRKIFKWREGKEILQMDGKILPRYRQNSIEVFNNPDSDARVLLASTRACCEGISLTGASR
VVLLDVVWNPAVGRQAISRAFRIGQKKFVYTYNLITYGTGEGDKYDRQAEKDHLSKLVFS
TEDEFSNVRNMLSKAEMEHCSKLISEDKVLEEMTSHDQLKGMFLKIHYPPTESNIVFTYN
QIAPELS
NT seq
4344 nt
NT seq
+upstream
nt +downstream
nt
atggatcgcgccgcgcgcctcgcccgccgccgccgcggcggcggcgtgaccgtggctgaa
tcccgcatggtgcggggccgccgccgcggaggcgacgcggggccggtggtggtcatcgat
gtcgaagacgacggggaggacgctgctgatgactccgccggcggtgggggtggagcggcg
gcggcggtgaagaggagggtggtggttccgggggccgtggcgacgcggacgcgatcgcgg
aggatggcgatggcgcagcaggcgcccgtcacgccgccggctgcggcggaggaggcgccg
agcaggaggaggaagaggaagggggcggctagtgcggaggcgggtggcggagggccgtcg
aagcgccgcgtgcgatcctcggggtcagcgggcgggcgtggtgcgcgcaagcgcaaggag
gcggaggcggatgaggaggaagcggaagcagaggctgaggaggaagcggaagcagaggcg
gggactcccgctcgcggagaatcgatggaggtgtcacaggttgacgggggtggcagcagc
gggcgagccgatgacgcttcgcacaatggtaatggcgagtctcgcgtgtgtaacgcggat
ggcattgatcaggcaagcgaggagcgtccaagtgtcgctggtggggatctaattgaggag
gagcactgcgggaatggggaagccagcgtcgctggtggggatcgaattgaggagcactgc
ggtaatgtggaagccggtgtcgccaattcgaatcgagatggcggtgagatcatcgctggg
gagggcacagaggatcgtgggaacacggagttagcagtggtggatccagtgcatgaagag
ttggcttccgatgaggatgattacgacgatgaaatgttggaggaaaagcttgtcggagat
gtcattcgtgcttacagcaatggcgctgatttggatacaaatggagtggactgggaagcc
gaggatgagatggaatttgctgatttggatacaaatgtagtggactgggaagctgaggat
gagatggaatttgatgatgataatgataatgatgctgatgacgacggtgataattttggg
ggtgatgcggatgaaggtgacaaatctgtacaaatgcatgacttttctaaggtggaaaca
caagatttggtgagccacaatgttaatgttagtgaagtgaggcctcatgaggatgaggag
gctatcaaggatgagatggagtcaaagggaaaaggatctctcagttttaatgaagggagc
tcctatattgaaattcttgactctgacgaggaagtcaaagtggtcaatgacacagggaat
gccttgagaaggaagccattagtaccagcgaagctaccgattgtgccatcttgtgttgca
tggagaactcggtcatcatggggtatgaaggaggagaggatttcttacaatacatatttc
gaggtattgtctgatgagccaaaagaggatgatgatgacactgaagtggaattggatgat
gaggaggacgatgaaaacgatgacgattgcaatagtgctagctgtgatgaagaagatgaa
gaggaagaagaggaaagagaggaggaagaggaagaagctcaaaggagaaagcaaaagaaa
gggattgactcatctgatgatgagatgattgatgatgctgtagattgtggcattgattgg
gaggaggattacccagaggttgattttactcggccacttacctttcagaaagatggcagt
gaggcccctgtgggcagcgaggcttttacggagcaacagaagagatcgcgatttacatgg
gagcttgagaggaggaaaaaactgaagcttggcatgatgacgaatcatcgtttgtatgaa
cgagacctggaatcagattccaactcatcagattctagtcagaatcgaaaaaatggatgt
caagggagtggtgatcacagaactgggaggaaaaggaagaatccattatcaaaatctggt
aagaaatccagccgcatgttaaagaggcagtctcttatgaagcttctgatggacaagatg
tgtagcaatgatgatgggaagtctactccttttgaccagaagccccagattgagtatagt
ttcaaggatttgcatccgttggttttttcatttggggacgatgatcctagtccaactgat
aggtcagagcaagatgctgcactggatatgctatgggctgatttagacttcactttagag
tcagagaacattgggacttattatgatgatgagggccaagaggacactctgctagatcat
gcacttgctcctattacaccttgttctagagggaagcatgaatttattattgatgagcaa
ataggaatcagatgcaaatactgctccttggtaaatctggaaatcagatttattttacca
ttgctggcctccaattttgcagagaaacctgcatggcgaaacagctcttgtttgaagact
gcgttgatgtgtcctgatctttatgaacaaacagggactggtgatggacaatctcaagat
ttccatataaatggaactgtgtgggatctcattcctggcgtcattgctgatatgtatcag
catcaacgtgaggcatttgagtttatgtggacaaatctagtgggtgatattaggcttaat
gaaataaagcatggggctaagcctgatgttgttggaggatgtgtgatctgtcacgcccca
gggacaggaaagactcgtttggctattgtgtttatccagacatacatgaaggtgttccca
gactgccgaccggtgattattgcacctcgtgggatgctgtttgcttgggaacaagagttc
aagaaatggaatgtcaacgttccttttcatataatgaacactactgattactctgggaag
gaagacagagatatatgtagattaataaagaaagagcatcggactgaaaagttgactagg
cttgtaaaactgttttcatggaacaggggtcatggtgttcttggaattagttatggtcta
tatatgaaactaacatctgaaaaggttggctgcactggagaaaacaaagtgagaactatt
cttcttgagaaccctggtttgcttgttctcgatgaagggcacacacctaggaatgagcgc
agtgttatttggaagacactaggaaaagttaaaaccgagaagcgtataattctatctgga
actcctttccaaaataattttcttgagctttacaatattctctgtttggtgaggcctagg
tttggtgaaatgtttttgactaaaacaagagtgggtcgaaggcactgtgtctcaaagaag
caacgggataaattttctgataaatatgagaaaggagtttgggcttccttaactagtaat
gtaactgatgataatgcagaaaaggtaagatcaatactgaaaccatttgttcatatccat
aatgggactattcttcgaactcttccggggctcagagagtgtgtgatagttctgaaacct
ctaccgcttcaaaagagtatcattagaaaggtagaaaatgttggatctggtaacaatttc
gaacatgagtatgttatttctttagcctccacacatccttcacttgtaaacgcaattaac
atgacggaagaagaagcttcccttattgataaacctatgcttgaaagattaaggtctaat
ccttatgaaggagtaaaaacaaggtttgtaatggaagttgttcgtttgtgtgaagcattg
aaagaaaaggtattgatttttagtcaatttattcagccattagaattgataaaggaacat
cttcgtaagattttcaaatggagagaaggaaaagagattctccaaatggatgggaagatc
ctcccgagatatcgtcaaaattcaattgaggttttcaataatccggatagtgacgcgagg
gtgttacttgcatctacaagagcttgttgtgaagggattagcctaacaggggcttctaga
gttgttcttctagatgttgtctggaatccagctgttggaaggcaagctatcagcagagca
tttaggataggacagaagaaatttgtatatacatacaatttaataacttatggaacaggt
gaaggtgacaaatatgataggcaagcagaaaaggaccacttgtccaagttggtcttctct
acagaagacgagttcagtaatgttaggaacatgctttcaaaagctgaaatggagcactgt
tctaagttgatatccgaggataaggttctggaggaaatgacttcccatgaccagctgaaa
ggcatgtttttaaagattcattatccaccaactgagtcaaacattgtttttacttacaac
cagattgctcctgagttaagttaa
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