Oryza glaberrima (African rice): 127775866
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Entry
127775866 CDS
T08853
Name
(RefSeq) pectate lyase-like
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
ogl
Oryza glaberrima (African rice)
Pathway
ogl00040
Pentose and glucuronate interconversions
ogl01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
127775866
Enzymes [BR:
ogl01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
127775866
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GFIT
Motif
Pfam:
Pectate_lyase_4
Pec_lyase_N
Beta_helix
DUF2505
NosD
Motif
Other DBs
NCBI-GeneID:
127775866
NCBI-ProteinID:
XP_052158137
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Position
6:2479471..2481262
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AA seq
453 aa
AA seq
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MDIYTTSHHSTIMAASSVTGSRRLCILFYLLTVVATVVTAASAHTAHNATADEEYWEKRA
EEARSFNRAAYVSDPVATLNRFNADVLRATTRRSLARYTGPCMATNPIDRCWRCRDDWAT
DRKRLARCVRGFGHRTVGGAAGKIYVVTDASDDEMVIPRKGTLRYGVIQDRPMWIVFARD
MIIQLRQELIVNHNKTIDGRGAQVHITGAQITLQGVQHVIIHNVHIHHSVPHGGGMIRDS
KRHYGLRTRSDGDGISIMSSSNIWIDHVSMSNCSDGLIDAVSGSTAITISNGHFTKHDHV
MLFGASNSDAQDEVMQITVAFNHFGKGLVQRMPRCRFGFFHVVNNDYTHWLMYAIGGNMN
PTIISQGNRFIAPDDVNAKEVTKREYTPYDEYKEWVWKSQGDVMMNGAFFNESGGQNERS
YDQLDFIPAKHGKYVGQLTKFAGTLNCHVGMPC
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atggatatatatacgacatcacaccacagcacgataatggcagcctcctccgtcacgggg
agccgccgcctctgcattctcttctacctcctcactgtcgtcgccaccgtggtcaccgcg
gcgtcggcgcacacggcgcacaacgcgaccgccgacgaggagtactgggagaagcgcgcc
gaggaggcccgctcgttcaaccgcgccgcctacgtgagcgaccccgtcgccaccctgaac
cgcttcaacgccgacgtgctccgcgccaccacgcgccgctcgctggccaggtacaccggc
ccgtgcatggcgaccaaccccatcgatcgctgctggcgctgccgcgacgactgggccacc
gaccggaagcggctggcgcggtgcgtccgtgggttcggccacaggaccgtcggcggcgcc
gccggcaagatctacgtggtgaccgacgccagcgacgacgagatggtcatcccgaggaaa
gggactctccggtacggcgtgatccaggaccggccgatgtggatcgtgttcgcgcgcgac
atgatcatccagctccggcaggagctgatcgtgaaccacaacaagaccatcgacggccgc
ggcgcgcaggtgcacatcaccggcgcccagatcacgctccagggcgtccagcacgtgatc
atccacaacgtccacatccaccactcggtgccgcacggcggcggcatgatccgcgactcc
aagcgccactacggcctccgcacgcgcagcgacggcgacggcatctccatcatgtcctcc
tccaacatctggatcgaccacgtctccatgtccaactgctccgacggcctcatcgacgcc
gtcagcggctccaccgccatcaccatctccaacggccacttcaccaagcacgaccacgtc
atgctcttcggcgccagcaacagcgacgcccaggacgaggtgatgcagatcaccgtggcg
ttcaaccacttcggcaagggcctcgtgcagcgcatgccgcgctgcaggttcggattcttc
cacgtcgtcaacaacgactacacgcactggctcatgtacgccatcggtggcaacatgaac
ccgacgatcatcagccaggggaacaggttcatcgcgcccgacgacgtgaacgccaaggag
gtgaccaagagggagtacacgccgtacgacgagtacaaggagtgggtgtggaagtcgcag
ggggacgtgatgatgaacggcgccttcttcaacgagtccggcggccagaacgagcgcagc
tacgaccagctcgacttcatccctgccaagcacggcaagtacgtcggccagctcaccaag
ttcgccggcacgctcaactgccacgtcggcatgccatgctaa
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