Oryza glaberrima (African rice): 127775928
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Entry
127775928 CDS
T08853
Name
(RefSeq) pectate lyase-like
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
ogl
Oryza glaberrima (African rice)
Pathway
ogl00040
Pentose and glucuronate interconversions
ogl01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
127775928
Enzymes [BR:
ogl01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
127775928
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Motif
Pfam:
Pectate_lyase_4
Pec_lyase_N
Beta_helix
Cu-oxidase_2
Motif
Other DBs
NCBI-GeneID:
127775928
NCBI-ProteinID:
XP_052158199
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Position
6:21886960..21889241
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AA seq
448 aa
AA seq
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MEVLIRWSKLPAAGSLVLYAVFLLLSAAATSEANIGEYDEYWQKRKLMADAAAEATYKRD
PFEVTNSFNRAVHRSEEESGRRELAMTKRKKFAGPCKATNPIDRCWRCRADWVTDRKRLA
RCAQGFGRNTTGGLAGKFYLVTDGTDDDVENPRPGTLRWGVIQDEPLWIIFAKDMIINLK
EEMMINSDKTIDGRGAQVRITNGAQVTVQNSNNVIIHNIHIHDILQGKGGMIRDSPEHFG
FRTQSDGDGISIFGSTNVWLDHLSLSNCQDGLIDVIAKSTGVTISNCHLTNHNDVMLFGS
SDSFSEDQIMQITVAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSKNPTIIS
QGNRYIAPPNLAAKRITKQLGATEEEWKNWVWHSEEDLFMEGAYFTTSGGPIQKQFSNKD
LIKPKPGSYVTRLTRFAGSIPCVAGKPC
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atggaggtgctgatccggtggagcaagctgccggcggccggctccttggtgctgtacgcc
gtcttcttattgctgtcggcggcagccacatcggaggccaacatcggggagtacgatgag
tactggcagaagcgcaagctcatggctgatgccgccgccgaggctacctacaagcgtgac
cccttcgaggtcaccaacagcttcaaccgcgccgtccacagatcggaggaggagagcggg
aggagggagctggcgatgacgaagaggaagaagttcgcggggccgtgcaaggcgacgaac
ccgatcgaccggtgctggaggtgccgcgccgactgggtgacggacaggaagcggctggca
cggtgcgcgcaggggttcggccggaacaccaccggagggctggccgggaagttctacctg
gtgacggacggcaccgacgacgacgtggagaacccgcggccggggacgctccggtggggt
gtgatccaggacgagccactgtggatcatcttcgccaaggacatgatcatcaacctcaag
gaggagatgatgatcaacagcgacaagacgatcgatgggcggggagcgcaggtgcggatc
accaatggcgcgcaggtgacggtgcagaactccaacaacgtgatcatccacaacatccac
atccacgacatcttgcaaggcaagggcgggatgatccgcgactcgccggagcacttcggc
ttccgcacccagtccgacggcgacggcatcagcatcttcggctccaccaacgtctggctc
gaccacctctccctctccaactgccaggacggcctcatcgacgtcatcgccaagtccacc
ggagtcaccatctccaactgccacctcaccaaccacaacgacgtcatgctcttcggctcc
agcgactccttcagcgaggaccagatcatgcagatcaccgttgccttcaaccacttcggc
cgcggcctcgtccaaagaatgcccagatgccgatggggatttttccacgtggtgaacaac
gactacacgcactggctgatgtatgccatcggagggagcaagaacccgacgatcatcagc
caggggaacaggtacatcgcgccgccaaacctagcggcgaagcggatcacgaagcagctc
ggggcgacggaggaggagtggaagaactgggtgtggcactctgaggaggacctgttcatg
gagggggcctacttcaccacgtccggtggcccgatccagaagcagttcagcaacaaggac
ctgatcaagcccaagcccggatcctacgtcacgaggctcacccgcttcgctggctccatc
ccatgcgtggccggcaagccgtgctag
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