Oncorhynchus gorbuscha (pink salmon): 123993429
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Entry
123993429 CDS
T07892
Name
(RefSeq) LOW QUALITY PROTEIN: polyribonucleotide 5'-hydroxyl-kinase Clp1-like
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
123993429
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ogo03019
]
123993429
Enzymes [BR:
ogo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
123993429
Messenger RNA biogenesis [BR:
ogo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
123993429
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
CLP1_N
Clp1
TniB
CbiA
ATP_bind_1
AAA_16
AAA_18
MMR_HSR1
AAA_22
Motif
Other DBs
NCBI-GeneID:
123993429
NCBI-ProteinID:
XP_046151520
LinkDB
All DBs
Position
LG13:complement(69460011..69464238)
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AA seq
440 aa
AA seq
DB search
MVTEGPEMTGEEGVGTGAGGGGTRFDLEKETELRFEVEAGEXMHLELLTGLAEVFGSELN
RNKKYTFGPGSKIAVFTWQGCSVSLSGKTEVAYISKDTPMLLYLNAHTALEQMRRQAERD
NERGPRVMVVGPTDVGKSTVCRLLLSYAVRLGRRPTLVDLDVGQSGVSVPGTMSALCIER
PADVEEGYSVQAPLVYHFGSTTPGTNIKLYNKLTSCLAEVFSQRCEENRKASVGGCIINT
CGWVKGSGYQALVHCASAFQVDVVLVLDQERLYNELKRDLPHFVRVVLLPKSGGVVERSK
DCRRESRDEKIREYFYGFRSALFFPHAFDVRFSDVRIYKIGAPSIPDSCLPLGMSQDDTQ
LKLVPVTPGRDLTHHVLSVSCADEGAGGVRRGVLESPVCGFVVVTNVDTQAQVMTVLSPA
PRPLPRHTLLIMDIRFIDLK
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
atggtgactgagggcccagagatgactggtgaggagggagtggggactggtgctggtggc
ggggggacgaggtttgacctggagaaggagactgagctgcggttcgaggtggaggccggg
gagnnaatgcatctggagctgctcacaggattggcggaggtctttggctctgagctcaac
cgcaacaagaagtacacatttggaccaggttccaagattgctgtgttcacctggcagggc
tgtagtgtttctctctcggggaagacagaggtggcgtacatatcaaaggacacacccatg
ctgctctacctgaacgcacacactgcactggaacagatgagacgacaggcggagagagac
aatgagaggggaccacgggtaatggtggtggggcctacagatgtggggaagtcgactgtg
tgcaggctgttgctgagctacgctgtcaggctgggcaggaggcccacactggtggacctg
gatgtgggccagagtggggtgtcagtcccgggcacaatgtcagcactgtgtattgagcgt
ccggctgacgtggaggaggggtactcagtacaggcgccgctggtctaccactttggttcc
accactccaggaaccaacatcaaactctacaacaagttgacgtcgtgtctggccgaagtg
ttctcccagcgctgtgaggaaaacaggaaggccagtgtgggcggctgcatcatcaacacc
tgtggctgggtgaagggttctggctaccaggccctggtccactgtgcctcagccttccag
gtggatgtggttctggtgctggaccaggagaggctttacaacgagttgaagcgggaccta
ccgcacttcgtccgagttgtgctgctacccaaatccggaggggtcgtggagcgctctaaa
gactgccggcgtgaatctcgggacgagaagatccgggagtacttctatggttttcgcagt
gccttgttcttccctcacgctttcgatgtgcgcttttctgatgtgcgcatctacaagatc
ggagcgccttccatcccggactcatgcctgccgcttggcatgtcgcaggacgacacccag
ctgaagctagtccctgtgacgcccggtcgtgacctcacacaccacgtgctgagcgtaagc
tgtgctgatgagggggctggaggggtgcgcaggggtgtgctggagagcccagtgtgtggc
ttcgttgtggtgactaacgtggacacacaggcacaggtgatgaccgtgctctcgcccgcc
cccagacccctccccagacacacactgctcatcatggacattcgcttcatcgacctcaaa
tag
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