Oncorhynchus gorbuscha (pink salmon): 123998324
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Entry
123998324 CDS
T07892
Symbol
col6a4a
Name
(RefSeq) collagen alpha-6(VI) chain
KO
K06238
collagen type VI alpha
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo04510
Focal adhesion
ogo04512
ECM-receptor interaction
ogo04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
123998324 (col6a4a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
123998324 (col6a4a)
09142 Cell motility
04820 Cytoskeleton in muscle cells
123998324 (col6a4a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ogo04147
]
123998324 (col6a4a)
00536 Glycosaminoglycan binding proteins [BR:
ogo00536
]
123998324 (col6a4a)
Exosome [BR:
ogo04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
123998324 (col6a4a)
Glycosaminoglycan binding proteins [BR:
ogo00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
123998324 (col6a4a)
Hyaluronan
Extracellular matrix or blood plasma proteins
123998324 (col6a4a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
VWA_2
Collagen
VWA_CoxE
Kunitz_BPTI
Integrin_beta
Motif
Other DBs
NCBI-GeneID:
123998324
NCBI-ProteinID:
XP_046159396
LinkDB
All DBs
Position
LG15:complement(85098181..85135231)
Genome browser
AA seq
2727 aa
AA seq
DB search
MEGTQGLLAIFTIATCFLVNGAQKTVCKEEAVADIVFLVDGSWSIGSENFKQIRQFLYTL
VNSFDVAPDQVRIGLVQYSNTPRTEFLLNTFQDKQDILQYIKNLPYMGGETNTGLGLDFL
LNELFVDRAGSRVNENVPQIGVVITDGESMDNVGLHALKLKKQGVTLYAIGIKEADEDQL
KEIATTPHNQHVYSVSDFAALQGISQSLIQVLCTTVDEAKRPISKVVQECLNATVADIVF
LVDGSTSISPTNFQEVRRFLHSFIEGLDIGADKVRVGLAQFSNEIQKQFHLGEHTEQRAL
LEQVDSLPQLGGGTATGKAITVLREEFFTKANGSRADQRVPQIAVVLTDGESADNVTLPA
KALRQQGVIVFAIGVGAANINELKYIANRPHEHFLVNIESFQALQTLSQGLLQTVCVSME
NQRMALIPKFSDIFFLVDSNMMQADFQLVRTLLMRLVNQLNPSTKTMRLGLAQFAQDTKV
EFLLNTHNTKEEYLAALRKFRLPLRPNRSRHLGDALEYAHAHFFTTASGGRNEQGYRQFL
VTVTGGDSKDNVMKVARTIKSEGTTIVSIGLGESTLPELKLMATSPFFYQTTSITSVLKT
VFETEEVVPVTDDCSEASLADIVFIVDESSSNRTANFQLVRGFIHKIVDGLDIDFNRVRV
GIVLYSNKASAQVYLNSFQEKTNILQFIKILPYRRGLTYTGEALEYARENMFIKERGSRK
EQGVQQVAIVITGKSQDNVTSHAAALRRAGVTVYAVGIKDADENELRQIASDPPNKHVLH
VDSFAKLKTLEKSLKKSVCYNILKKAVKDNARTYTAKQSCLQTDEADMFFLIDHSGSIEY
PDFADMKTFINKFINTFHIGPHHVRVGVVKFSDTPALEFDLTTYPDKPSVEKAVDGIIQL
GGGTKTGLALNSMGPHFDRAKATRSNKVREYLIVITDGESEDNVKDQAAKLRAQGITIYA
IGVKLANNTQLLEIAGSQEKKFFVNNFDALKPIKNDIITDICSPDICNDMKGDVLFLIDS
SGSINNPDFQKMKVFMQSIINKSDIGLDKVHVGIIQFSTSQQVIFPLNKHSGKEGMLQDL
QTMQQIGGGTHTGKALSYTSQFFDPPKGGRTNVKQFLIVVTDGEAQDEVMSPAKKLQDKG
VIIYAIGVVNANNTQLLEISGAQERVYSERDFDALKALDSQLALAICDPERECVRTEIAD
IIFLVDGSTSISSDNFDIMKNFMMSVVNETSVGEKQTRYGLVVFSDNPESKFTLNEYKSK
RDVNSAITKLREPSGDTYTGKALKYSLGYFGAQYGGRKALNVPQWLMVITDGEATDPYSL
AGPAKELRDNGIIVYSIGVVGANKQELELMAGDTNKVFFVDDFHKLDTLHKNISFEFCQT
SKPVCEKTQGDLVLLIDSSGSISTTDFTIMKRFATDLVSSFNIAEQSFRVGVAQFSSDPK
KEFFLNEYYTEAEVNNQINNMMQIRYTTNIGKALDYVRTEYFQPARGSRINAKVSQNLVV
ITDGRSDDDVVDAAEKLKAMNIEVFAIGIGKDHKPVELGQITLNPERVFSVQDFASLDKI
KKKVVDTICSSKVPETQAGCTIDIAMGFDITRKATAQGLFDGQAQLQAFLPQIIRYVSNL
KGLCCLAGDGSIETNIGFRVVEQDGKVLYDYNFEKYDEKIVEKVMALQTSQTTYFNSFLL
RSFSDKFQKSNAGVKVLVIFSDGLDDDVMKLEQESELLRTKGKGINALLTVALEGVQNAN
LLQMVEFGRGFGYKQPLNIGMHNLGNTLLTQIDTVAERECCNVMCKCTGHEGIRGNRGRP
GTKSQPGLKGHPGFPGEEGGIGERGPPGPTGPQGLQGCSGRRGLKGSRAYRGDRGDDGDH
GLDGVDGEQGLIGTVGAAGERGNPGRPGNSGLLGEPGVKGQRGLRGDPGDSGVDSIVAGP
KGGRGNPGLPGDPGEEGSRAESGIVGNPGPQGRRGLPGPNGTPGDPGVVGLQGIPGPSGP
QGIRGDLGQPGPRGLQGLPGPQGTPGTMGGKGSTGRRGMNGQKGQPGDLGVNGALGTLGP
RGMPGLDGSDGHGPPGPQGMKGEPGFHGYPGLQGESGDFGVKGGPGPKGNRGRGGNSGRS
GDSGDPGSIGPPGHTGFRGRPGERAMSECQLTTYIRDNCACSQGQAACPAYPTELVFALD
MSQDVEPATFERMRSALLSILDDVAIAESNCPTGARVAVVSYSANTKYLIRFQDYQRKPE
LLEAIQNIALERTSNQRHLGEAMRFVGRHVFKRTRKALTMRKVAVFFTNGPSVDSAAIVT
AAMEFKALNIAPAVIAMRNSPDVQRAFEADDTGSFILVRLVDRSQDQNSVLTRIKNCVIC
YDHCKPAQGCDFTDAQRPLVVDMDLTLVVDGSREIRADQYAGVQELLGSVVKQVAWSPKP
SVADGRARVALLQTSGSLLPQTSQAVKVEFDLQKYHNHIGLQTHLRSMQQQGGVSSLGQT
LEYALSKVFLKATRPRKSRVVLAVVGAETAHWDQDKLAYISQKAKCQGVSLFVIAVGDHY
NSTQVEELASTPSEQHLLHLWHVKEWERGYAQRFFRAFLRVLSKGGNSYPPAHLKLKCEL
MLGQEHGQGQGQAEWDVWKEEEEYTDEEFLEHTGVFPTQMALDQVDTIHAFSRGDGATSP
PRPQPNSNDHTTLLRTEESTVLNQDACFFKQDMGGCENYTLKWYFDTIQSECSRFWYGGC
GGNGNRFETQEACEGLCLRRNSTHVKP
NT seq
8184 nt
NT seq
+upstream
nt +downstream
nt
atggaggggacacagggcctcctggccatcttcaccatagcaacatgttttctggttaac
ggagcacaaaaaacagtctgcaaggaagaggccgtggccgacatcgtcttcctggtggac
ggttcatggagcatcggctcagagaatttcaaacagattcgccagttcttgtacacgctg
gttaacagctttgacgtggcccccgaccaggtgcgcatcggtctggtccagtacagcaac
acaccgcgcaccgagttcctcctcaacaccttccaggacaaacaggacatcctgcagtac
attaaaaacctgccttatatgggtggtgaaaccaacactggtctgggcctggacttcctg
cttaatgagctctttgttgaccgcgcagggagccgggtgaatgagaacgtgccccagatc
ggtgtggtcatcactgatggtgaatcaatggacaatgtggggctgcatgcccttaagctg
aagaagcagggcgtcacgctgtacgccatcgggatcaaagaagcagacgaagatcagctg
aaggagattgccactacacctcacaaccagcacgtgtacagcgtgtcagactttgctgca
ctgcaggggatctcccagagcctcatccaggtgctctgtactaccgtagatgaggcaaag
agaccaatatccaaagtggtacaagagtgcctcaacgccacagtggctgacattgtgttc
cttgtggatggctccaccagcatcagccctacaaacttccaggaggttcggaggtttctc
cacagcttcatcgaggggctggatatcggtgcggacaaggttcgcgtaggactggcccag
ttcagtaatgagatccagaagcaattccatttgggggaacatacggaacaaagggcccta
ctggagcaagtggacagccttccacagctcgggggaggcacagccaccggcaaagccatt
actgtccttcgggaagagtttttcaccaaggccaacggtagccgcgctgatcagagggtg
cctcagattgctgtggtgctcactgatggggagtctgcggacaacgtaacgctgccagcc
aaggcgctaaggcagcaaggggtcattgtgtttgctattggagttggggcagccaacatc
aatgagctgaagtatatcgctaacaggccccatgagcatttcctggtcaacatagaaagt
ttccaggccctacaaacactttctcagggtctgctgcagactgtctgtgtctccatggag
aaccagaggatggctctaatcccaaaattctctgatatcttcttcctggtggacagcaat
atgatgcaggcagacttccagctggtcagaacccttctgatgcgactggtcaaccaactc
aacccgagcactaaaacgatgcgcctgggtctggcccagtttgcccaggacaccaaggtg
gagttcttactgaacacccacaacaccaaggaagagtacttggcagctcttaggaaattc
aggctgccgctgcgtcccaacaggtctcgtcacctgggcgatgccctggaatacgcccat
gcacacttcttcactacagcgtctggtggccgtaatgaacaaggctaccggcagtttcta
gtcacggtgacagggggggattcgaaggataatgtgatgaaggtggcacgtactatcaaa
tctgaagggacaaccattgtgtctatcgggttgggtgaatctacacttccagagctaaag
ttaatggccacctcgccattcttttaccagactacatccatcacctctgtgctaaagact
gtctttgagactgaagaggtggtccctgtgactgacgattgcagtgaagcttcactggct
gacattgtgtttatagttgatgagtcttcgagcaatagaactgcaaacttccagctggtt
cgtggattcatccacaagatagtagacggcctagatatagacttcaacagggtgagggtg
ggtattgtcctctatagcaacaaggcctcggcccaggtctacctcaactccttccaagaa
aaaacaaatatccttcagttcattaagatcctgccctaccgtcgcggtctcacttacact
ggcgaggccctggagtatgccagggagaatatgtttatcaaggagaggggcagtcggaaa
gaacagggggtgcagcaggtggcgatagtcatcaccggaaagtcccaggacaacgtaact
tctcatgccgctgcactgcgcagagctggcgtcactgtctatgcagtggggatcaaggat
gctgacgagaacgagctgagacagatcgcttcagatccccctaacaagcacgtattgcat
gtggacagctttgccaagctcaagaccctggagaagagcctgaagaagagcgtgtgctac
aacatccttaaaaaagcagtcaaagacaatgcaaggacgtacactgccaagcaaagctgt
ttgcagacagatgaagcagacatgttcttcctgattgaccactcagggagtattgaatat
ccagactttgctgacatgaagacatttattaacaaattcataaacacattccacatcgga
ccgcatcatgtccgtgtgggtgtggtaaagttctctgatacaccagctcttgagtttgat
ttgacaacctaccctgacaaaccttcagtggagaaagcagtggatggtatcatccaactt
ggaggcgggacaaagaccggattagcgctgaactctatgggtccccactttgatcgggct
aaggccacccgtagtaacaaagttcgcgagtacctcattgtcatcacagacggagagtct
gaagacaacgtgaaggatcaagcagcaaagctgagggcgcagggcatcaccatatatgcc
attggggtgaagctagctaacaatacacagctgctggagattgctggcagccaagagaag
aagttctttgtcaacaactttgacgctctgaaaccaataaaaaatgacatcatcacagat
atctgctcccctgatatttgcaacgacatgaagggggatgtcctcttcttgatcgacagc
tcaggtagcatcaacaacccagacttccagaagatgaaggtcttcatgcaatccatcatc
aacaaatctgacataggcctggataaagtgcacgtgggcatcatacagttcagcaccagc
caacaggtgatcttccctctcaacaagcatagcggtaaggaaggcatgttgcaggattta
caaacgatgcaacagataggcgggggcacacacaccggcaaagccctgtcctacacctcg
cagttctttgacccaccaaaaggagggcgcactaacgtgaagcagttcctgattgtcgta
accgatggtgaggcgcaggatgaggtaatgtctcctgccaagaaacttcaagacaagggt
gtgatcatctacgctattggggtggtcaatgccaacaatacacagttactggagatcagt
ggcgcacaggagagggtctactccgagagggactttgatgcactcaaggctttggatagc
caactggcattggcaatctgtgatccggagagagagtgtgtgaggacggagatcgcagac
attattttcttggtggacggctccaccagcatcagctcagataattttgacataatgaaa
aacttcatgatgtccgtggtcaatgaaacctctgttggggagaagcagacacgctatggt
ctggttgtcttttcagacaaccccgagtctaaattcacactcaacgaatacaaatctaag
cgagacgtcaatagtgccatcacaaagcttagagagcccagtggagacacctacactgga
aaggcactcaagtattctttgggttattttggtgcacagtacggcgggcgaaaggcccta
aatgttccccaatggttgatggtgatcacagatggtgaggctactgacccctatagccta
gctgggccagccaaggagctacgggacaatgggatcatagtctatagcatcggagtggtt
ggagcaaataagcaagagcttgagctcatggcaggggacacgaataaggttttctttgtg
gatgacttccataaactagacacactgcacaaaaatatttcctttgaattctgccaaacc
agcaaaccagtctgtgaaaaaacgcagggggatctggtcctgttgattgacagctcaggg
agcatcagcaccaccgacttcactatcatgaagaggtttgccacagaccttgtttccagc
ttcaacattgcagagcagtccttccgggtgggagtcgcccagttcagcagtgatcctaaa
aaggagttcttcttgaatgagtattacacagaagcagaggtgaacaaccagataaacaat
atgatgcagattaggtacacaacgaacatcggaaaggccctggactacgtccgtacagag
tacttccaaccagctagagggagccgtatcaatgccaaggtctctcagaacctggttgtg
atcactgacggacgttcagatgatgatgttgttgatgcagcagagaagctcaaggccatg
aacattgaggtgtttgccatcggtatcgggaaagaccacaaacctgttgagcttgggcaa
atcactctcaacccggaaagggtcttctctgtgcaggactttgccagcctggacaagatc
aagaagaaggtggtggatactatatgctcctccaaggtaccagagactcaagcgggctgc
accatagacatcgccatggggttcgatattacacgcaaggccaccgcccaggggctcttc
gatggccaagcccagctacaggccttcctgccacagatcatccgctatgtgtccaacctg
aagggcctgtgctgcttggcgggagatggttccattgagactaacattggcttccgcgtg
gtggagcaggacggaaaggttctctacgactacaacttcgagaagtacgatgagaaaatt
gtggagaaggtgatggccctgcagacctcccaaacaacatacttcaactccttcctcctg
cgctccttcagtgataagttccagaaatctaatgctggcgtgaaggtgctggtgatcttc
tcagacggactcgatgatgacgtgatgaaactggagcaagagtcggaacttctccgcact
aaaggaaaaggtatcaacgccctgcttacagtcgccttagaaggggtccaaaatgccaac
cttcttcagatggtggagtttgggcgaggatttggctacaagcagccgctcaacattggc
atgcacaatttaggaaacaccctgttgacacaaatagacacagtggctgagagggagtgc
tgcaatgtgatgtgtaagtgcaccggacatgagggtatccgtggcaacagaggacgccca
gggacaaagagtcagccaggactgaaaggacatcctggcttccctggcgaggagggggga
attggcgagagaggtccaccaggtcccactggcccacagggactacagggctgttctggg
aggagaggcctcaagggctcaagagcctacagaggggacaggggtgatgatggagaccat
ggccttgatggggttgatggtgaacagggtctgattggaacagttggagctgcaggagag
agaggaaacccaggaagaccaggcaacagcggcctcctaggagagccaggagtgaagggg
cagcgtggacttagaggtgaccctggagactctggagtggacagcattgtcgcgggtccc
aaaggaggaaggggaaatccaggactaccgggagacccaggagaagagggcagtcgagca
gaaagtggaatcgtcggaaacccaggtcctcaaggaagaagaggtctccctggtccaaat
ggaacaccaggggatccaggagttgtaggcctccaaggaattcctggcccttctggacca
cagggtataagaggagacttgggccagcccggacccaggggcctgcagggtttacctgga
cctcagggcacacctggaactatgggtggcaaaggatcaacaggaagacgagggatgaac
ggacagaagggccaacctggggacctcggagtcaacggagcccttggaacacttgggcca
agagggatgccgggtcttgatggcagtgacggccatgggcctcccggaccccagggaatg
aagggagagcctggtttccatggttaccctggattacagggtgaaagtggtgattttgga
gtcaaaggaggtccaggccccaaaggaaaccgaggcagaggggggaactcgggcagatcg
ggtgactcaggagatcccggatccattggaccaccgggacacactggctttagaggcaga
ccaggagagagagccatgtctgaatgccagctgaccacctatatccgtgataactgtgca
tgctctcaaggccaggcagcgtgcccagcctaccccacagaactggtctttgctctggat
atgtcacaggatgtggagcctgccacgtttgagaggatgcgctccgctctcctctccata
ttggatgatgttgccatcgccgagagcaactgcccgacgggtgcacgtgttgccgtggta
tcctatagtgccaacaccaagtacctgatccgattccaggactaccaacgcaagccggag
ttgttggaggccatccaaaacattgcattggaacgaacgtccaatcagcgccatcttggg
gaggccatgcgctttgtggggcgccatgtcttcaagcgaacccgtaaagcgttgacgatg
aggaaggtggcagtgttcttcaccaatgggccctctgtggacagcgctgccatcgtcacg
gccgccatggagttcaaggccctgaacatcgctcctgctgtcatcgccatgaggaactcc
cccgatgttcaacgagcttttgaggctgatgacacgggcagcttcatccttgttcgtctg
gtggataggtcacaggaccaaaattctgtgctgacaagaatcaaaaattgcgtcatctgc
tacgaccactgtaaaccagcccaggggtgtgattttactgacgctcagcggcccctggtg
gtggatatggacctgaccctggtggtggacggttcaagggagatccgggccgatcagtac
gctggcgtccaggagcttctgggctcagtggtgaagcaggtagcctggagccccaaaccc
agcgtggctgacggccgggccagagttgcccttctccagaccagtggttctctgctcccc
cagacttcccaggccgtcaaggtagagtttgacttgcagaagtaccacaaccacattggt
ctacagacacacctgaggagcatgcagcagcagggaggagtgtcgtctctggggcagacc
ctggagtacgctctgagcaaggtgttcctcaaggccaccaggcccaggaagagtagagtg
gtgctggctgtggtgggggccgagacagcccactgggaccaggacaagctggcctacatt
tcccagaaggccaagtgtcagggcgtttccctgtttgtgatcgcggtgggcgaccattac
aacagcacacaggtggaggagttggcgagcacgccgtcagagcagcacctgctccatctg
tggcacgtgaaggagtgggagagaggttacgcacagcgcttcttcagagccttcctcagg
gtcctcagcaagggagggaacagctaccctcctgcccatctcaaactcaagtgtgagctg
atgctgggacaggaacacggacagggacaaggacaggccgagtgggatgtgtggaaagag
gaagaggagtacacagatgaggagttcctggagcacactggtgtatttccgactcagatg
gctcttgaccaggttgacactatacatgccttctccaggggagatggagccacttcaccc
ccccggccacagccaaactctaatgatcacacaacgctcctgaggacagaggaaagtaca
gttcttaaccaggatgcatgtttcttcaaacaggacatgggaggttgtgagaactacact
ctgaagtggtacttcgacacgatacagagcgagtgctcccgtttctggtatggcggctgt
ggcggcaacggtaaccgcttcgagacgcaggaggcttgcgaaggcctctgtctgaggagg
aactccacacatgtaaaaccctga
DBGET
integrated database retrieval system
