Oncorhynchus gorbuscha (pink salmon): 124003210
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Entry
124003210 CDS
T07892
Name
(RefSeq) cyclic nucleotide-gated cation channel beta-1-like isoform X1
KO
K04952
cyclic nucleotide gated channel beta 1
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo04744
Phototransduction
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09150 Organismal Systems
09157 Sensory system
04744 Phototransduction
124003210
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ogo04040
]
124003210
Ion channels [BR:
ogo04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
124003210
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
cNMP_binding
Motif
Other DBs
NCBI-GeneID:
124003210
NCBI-ProteinID:
XP_046167250
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Position
LG02:complement(47020141..47053852)
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AA seq
1339 aa
AA seq
DB search
MFNWVVKVVPQPPDAPGSLGQETVNPTPASPQKVSKGEVKKEVNVKPAKLKEEDISEDNG
IQSQSGVMTWLSNGFTSALPQPTGSPNLSRSNSVSRSLQEVQREDERNGVIKWIAEGLSK
VVPQPDDKYREDIREEEEETETHEEYIAEPCVYNMKDVPDAEPLPHIPVVEIFSDDEEED
RVPQFPLKVVNWIKNVIPQPVMLPAGYVEAQSKAQSKRSSLDKVLSPPPESLKGDEDSQN
SNVVGWFVTGLGLKMPQPVARSRDDVEVVQNISKQPKAVDLVLEEVVEADLKDLNQEVPS
KAIQSEPPQPSKPAQMTQPTQTTQSQPSQPKQPVKPEEPEQTLPNVPESTTPSLEDAETQ
TGRWTPFIESIKREAEGVAMATMEERMTQERVDLVRMAEEVARHTAETAIRQMQEAQSIK
LSIHSQEAILEEDEDPELHMLREEESEVEHTKNKMTECQVCPAKEQPVDAAKSAAQSERD
FASPDVEPEPQEELESQRASPSPPPSPEPDPVKRAEPEPKPKAQDAKVAPEPVTQQPQKA
EGAEDGTAPDTTTKEEGETAEEGGCGASSRLSVHPAVNVEDVDSGGGGHRRHIRQILTPQ
DPNLKTLTVPRVSKASRQSKVADKEKNLHSQSEDDDEEDNETAVRAWPSQSSILSGDDGL
KERPASSASQASYVVNERLQELVKMFKERTERAKEKLIDPDDSDDDSPTASPARAPTPPP
APPEEPEEEAQPASPEREMEEQQPQSRLCCKVTPPRWIRALLQYRFPSSIDPFTNLVYVL
WLFFVTLAWNWNVWLIPMRWAFPYQTPSNIYLWLLADYLCDLIYILDIMVFQPRLQFVRG
GDIVFDKKDMRKNYMKTFRFKMDVISLVPLELFYFKTGINPLLRFPRLLKVMSFFEFNDR
LEAILTKAYVYRVIRTTSYLLYCLHCNACLFYWISAYEGLGSTKWVYDGKGNSYIRCYYF
AVKTLITIGGLPEPTTLFEIIFQLINYFVGVFAFSIMIGQMRDVVGAATSGQTYYRACMD
NTVKYMASYRIPKDVQNRVKTWYNYTWQSQGMLDEQELLVQLPDKMRLDIAVDVNYDIVS
KVSLFQGCDRQMIFDMLKSLRSVVYLPGDYVCKKGEVGREMYIIKAGEVQVVGGPDGKTV
FVTLKSGSVFGEISLLAVGGGNRRTANVVAHGFANLFILDKKDLNEILVHYPESQKLLRK
KARNMLTKDKNPKEPLKEPAQVIPPRTETPKLLKAALEMAHQKTGLKRTLAKIKENTNIS
SISLQPSMSSSLTPLSPVTPVSSLDPERKSSIMSPTSDSSTWLRPASHCHRGETLSKEQD
NVAEEEAGESGKRKEKRKP
NT seq
4020 nt
NT seq
+upstream
nt +downstream
nt
atgtttaactgggtggtgaaagtggttcctcagccccctgacgcccctggctctctggga
caggagacagtcaatcctacacctgcatcaccacaaaaagtgtctaaaggtgaagtcaag
aaagaagtcaatgtaaaaccagccaaactgaaggaagaggatatttcagaggacaatggt
attcagagtcagagtggagtgatgacctggctctccaatggcttcaccagtgctctgcct
caaccaacaggcagccctaacctcagcagatccaactctgtatccaggtcactgcaggag
gtacaaagagaggatgaaaggaatggggtgattaagtggattgcagagggactgagcaag
gtggtgcctcagccggatgacaagtacagagaggatattcgagaggaggaggaggagaca
gagacgcatgaagagtatatcgcagagccatgtgtttataacatgaaagatgtgccagac
gcagagcccctcccacacatacctgtggtggagatcttttcagacgatgaggaagaggat
cgggtaccacagttccccctcaaagtggttaactggattaagaatgttattcctcagcct
gtgatgctccctgcaggttacgtagaggcccagagtaaggctcagagcaagaggtcatct
cttgacaaagttttgtcgccacctcctgagtctctcaaaggtgacgaggactcacaaaac
tccaatgtcgtgggctggtttgtgacgggcctcggcctcaagatgccacagcctgtcgcg
agatcaagagatgacgttgaagttgtgcagaatatctctaaacaacccaaagcagtggat
ctggttctggaggaagtagtagaagcagacttgaaggatctgaatcaggaagtgccatcc
aaggctatacagtcagaaccaccacagccttctaagcccgcacagatgacacagccaaca
cagacgacgcagtcacagccgtcacaaccaaaacaaccagtgaaaccagaagagcctgaa
cagactcttccaaatgtgccagagtctacaacaccatcgctggaggatgctgagactcag
acgggcaggtggactcccttcatagagagcatcaagagagaggctgagggcgtagctatg
gctaccatggaggaacggatgacccaggagcgcgtggatttggttcgaatggcagaggag
gtggccagacacacagctgagacagccatcaggcagatgcaagaggcacaatcaatcaag
ctttccattcacagccaggaagccattctggaagaagacgaggacccagagttacacatg
ctacgggaggaggagagtgaggtggagcacactaagaataagatgacagagtgccaggtg
tgtcctgctaaggagcaaccagtggatgcagcaaagagtgccgctcagtcagagcgcgac
tttgcatcacccgacgttgaaccagagccccaggaagagctagagtcccagagggcctct
ccatcccctcctcccagcccagaaccagatccagtcaagagagcagagcctgaacctaaa
ccaaaggcccaggatgccaaagtagcacctgaaccggtgacccaacagccacagaaagca
gagggggcagaggacggaaccgcacctgacaccactaccaaggaggagggggagactgca
gaggagggtggctgtggtgcgagctccaggctcagtgtgcaccctgctgtcaacgtggag
gatgtggattcaggcggaggggggcaccgtcgacacattcgccaaatcctcaccccccag
gaccctaacctcaagaccctgaccgtacccagagtgtccaaagccagccgccagagcaaa
gttgccgataaagaaaagaacctgcactctcagagtgaggatgatgatgaagaggacaat
gagaccgcagtgagggcgtggcctagccagtccagcatcctcagtggagacgatgggcta
aaggagcggcctgcgtcgtccgctagccaggccagctacgtggtgaacgagcgcctacag
gagctggtcaagatgtttaaggagaggaccgagagggccaaagagaaactcatagaccca
gatgactctgatgatgacagtcccactgcctcccctgcgagagctccaacacctcctcct
gcacctccagaggagccggaggaggaagcacaaccagcctcccctgagagggagatggag
gagcagcaaccccagtctagactgtgttgcaaggtgacacctcctcgctggatcagagcc
ctgcttcagtaccgcttcccctctagcatcgaccccttcaccaatctggtctatgtgctg
tggctatttttcgtcaccttggcgtggaactggaacgtgtggctgatcccgatgcgctgg
gccttcccctaccagacccctagtaacatctacctgtggctgctagccgactacctgtgt
gacctcatctacatcctggatatcatggtcttccagccccgcctgcagtttgtccgcggt
ggcgacatagtgtttgacaaaaaggacatgcgaaagaattacatgaaaactttccggttc
aagatggatgtcatcagtcttgtgccactggagttgttctattttaaaactgggatcaac
ccactcctccgcttcccacggctactaaaggtaatgtctttcttcgagttcaacgaccgc
cttgaggccatcctgaccaaagcctacgtttacagagtgatccggaccaccagctacctg
ctgtactgcctccactgtaacgcctgtctgttctactggatctctgcgtatgaaggtctg
ggctccacgaagtgggtctatgatggaaagggcaacagttacatccgctgctactacttt
gccgtgaagactctgatcaccattggtggactgccggagcccacaacgctctttgaaatc
atctttcagctcatcaactactttgttggagtgtttgccttttccatcatgataggacag
atgagagatgtggttggtgcagccacttccggacagacgtactacagagcatgcatggac
aacactgtcaaatacatggcctcctaccgtatccccaaagacgtgcaaaaccgggtcaaa
acctggtacaactacacctggcagtcccagggcatgctggatgaacaggagcttctggtc
cagctcccagacaagatgaggctggacatcgctgtggatgtcaactatgacattgtcagt
aaagtctctctcttccagggttgcgacagacagatgatctttgacatgttaaagagtctg
aggtctgtcgtttacctcccgggggactatgtctgcaaaaagggcgaggttggacgggag
atgtacatcatcaaggccggggaggtgcaggtggtgggcgggccagacggaaagaccgtg
tttgtcacactgaagtcggggtcagtgtttggggaaatcagcttgcttgcagtgggtgga
ggaaacaggagaacagccaacgtagtggctcatggcttcgccaacctgttcatcctggac
aagaaggacctcaatgagattttagtgcattaccccgagtctcagaagctgctccgcaag
aaggccaggaatatgctgacaaaagacaagaacccgaaggagcctctgaaggagccggcc
caggtgatccctcctcggacagagacacccaagctactcaaagctgctctggagatggct
catcagaaaacaggcctcaaaaggacccttgcaaagattaaggagaacaccaacatatcc
agtatttcgctacagccctcaatgtcctcctccctgacccccctgtccccagtcactcca
gtctccagtctggacccagagcgcaagtctagcatcatgtccccaacctcagacagctcc
acgtggctccgccccgcctcccattgtcacagaggtgagacgctgtccaaggagcaggac
aacgtggcggaagaagaggcaggagagagtgggaagaggaaagaaaagagaaagccatga
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