Oncorhynchus gorbuscha (pink salmon): 124020694
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Entry
124020694 CDS
T07892
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(IX) chain-like
KO
K08131
collagen type IX alpha
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo04510
Focal adhesion
ogo04512
ECM-receptor interaction
ogo04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
124020694
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
124020694
09142 Cell motility
04820 Cytoskeleton in muscle cells
124020694
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
ogo00535
]
124020694
Proteoglycans [BR:
ogo00535
]
Extracellular matrix (ECM) proteoglycans
Others
124020694
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
124020694
NCBI-ProteinID:
XP_046191899
LinkDB
All DBs
Position
Unknown
AA seq
721 aa
AA seq
DB search
MVDSQNTPQRGIVNLDGYTLIGKLKDNPVLAVPLELQSMHSDCDVGRPQTCNDLPARTSV
DEIVLQRASGPVGPPGPAGVPGIDGVAGERGDDGEDGPAGPDGDAGKLGSAGLPGVPGAD
GLTGPTGDEGPDGPLGQKGEPGKPGPRGLAGVGDDGPPGPPGPGGLPGDLGKGGPPGAMG
VRGPTGPGGSVGPRGAAGMQDLSAELCPGACPPGTPGHPGLPGMKGHKGVKGEGGEPGKQ
GHKGEEGDQGTTGDLGSQGPTGPQGIRGSTGMMGPKGGLGARGHDGDPGPQGVEGATGDQ
GQRGVMGESGPKGDEGSQGGRGITGLPGPKGKGGLSGVDGREGIPGLPGGKGTIGKAGSP
GEVGLQGLPGLPGSPGSKGTGGEKGSSGEAGLLGTIGSAGKTGEQGKAGGLGPVGPIGGP
GDIGVQGPAGPPGKPGSRGPKGDLGLPGVPGPPGLPGVKGERGEAGDGGPKGEQGGQGSE
GTSGDKGDVGDQGEAGPKGVVGNPGEPGNRGPEGSRGQPGIEGPAGTSGPRGMQGNRGAP
GIXGSQGPAGKEPSDQHIRQVCMRVMQEQLAQLAASLRRPESGAAGLPGKPGPPGPAGPP
GDSGFPGQAGARGLPGLKGPPGLLGLKGPKGELGDRGDRGPTVRGAKGQPGPPGLPGEPG
KPGYGQEGRDGERGPPGVPGQAGVPGPPGNAGPNGYCDPSSCNLRPGDIDTSIKGPEGTR
N
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atggtggactctcagaacacaccccagagaggtatagtcaacctggatggatacacgttg
attggaaagctgaaggataaccccgttttagcagtgccacttgaactccaatcgatgcac
agtgattgtgatgtggggcgaccacagacctgcaatgacctaccagccaggacgtctgtg
gacgaaatagtacttcagagggcctcgggccccgtcggccctccaggacccgcaggtgtc
ccaggaattgatggtgtcgctggcgagaggggagacgacggagaggatggccctgctggt
cctgatggagacgcaggtaaactaggctcagccgggttgccaggtgtgcccggggctgat
ggtttgactggtcctactggagacgaaggtcccgatggtccccttggacagaaaggtgaa
cctgggaaaccgggacctcgtggactagctggcgttggagacgatggaccccctggaccc
ccggggccaggaggacttccaggtgatttgggcaaaggtggaccccctggtgctatggga
gtgagaggaccaacaggacctggtggatcagtagggccgagaggtgcagcagggatgcag
gatttgagtgccgagctgtgccctggtgcctgtccacctgggacacctggtcatcccggc
ctccctggcatgaagggtcacaaaggagtaaaaggggaaggaggagagcctgggaaacaa
gggcacaagggtgaagagggtgaccagggaaccacaggggaccttggatcccagggccca
acgggtcctcagggaatcagaggctccactggaatgatggggcccaaaggtggactggga
gcacgaggacatgatggagatccaggtccccagggtgttgaaggagccactggtgaccaa
ggccagaggggcgtgatgggcgagtctggtcctaaaggtgatgagggatctcaaggtgga
agaggaatcacaggtcttcctgggcccaagggaaagggtggtttgtcaggagtggatggc
cgtgaaggtattcctggattgccaggtggaaagggcaccattggcaaggctgggtctcca
ggggaggtggggcttcagggacttcctggattacctggttctcctggctctaaaggaact
ggtggagagaagggtagctctggagaggcaggtcttcttggaacaataggatctgctggt
aaaacaggagagcaaggcaaagcaggaggtctaggacccgttggacccattggtggaccg
ggagacatcggagtacaaggaccagccggcccaccgggcaaaccagggtccaggggacct
aaaggagatcttggtcttcctggtgttcccggacccccaggcctccccggagtgaaggga
gagaggggagaagctggcgatggaggacctaaaggggagcaggggggacaaggttctgag
ggaacctctggagacaaaggagatgttggtgaccaaggagaagctggacccaaaggagtg
gttggaaacccaggagagcctggtaacagagggccagagggtagcagagggcagcctggc
atcgagggcccagctggtacttctggaccacgtggcatgcagggcaacaggggcgcacca
ggaatcnaggggtcacagggaccggcgggtaaagaaccaagcgatcaacacatcagacaa
gtctgcatgagagttatgcaagagcaactagcccagttggctgccagtctaaggaggccg
gagtctggagcagcgggcctgcctggtaagccagggcctcctggtcctgccggaccccca
ggggacagtggcttccctgggcaggctggagcaagaggactgcctggcctcaaaggacct
ccaggactcctaggactcaaaggacccaaaggtgaattgggcgacagaggagaccgaggt
cccacggtgcgaggggccaagggccagccaggacctcccggtctaccaggtgagcccgga
aagcctggttacggccaggagggacgtgacggcgagagaggacctccaggtgttcctggc
caggctggtgtacctgggcctcctggtaatgctggccccaatggctactgcgacccatcg
tcctgcaacctcagaccgggggacattgacaccagcatcaagggcccggagggaactaga
aactag
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