Oncorhynchus gorbuscha (pink salmon): 124034344
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Entry
124034344 CDS
T07892
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124034344
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ogo03019
]
124034344
Messenger RNA biogenesis [BR:
ogo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
124034344
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
124034344
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
124034344
NCBI-ProteinID:
XP_046203378
LinkDB
All DBs
Position
LG01:complement(20060823..20105741)
Genome browser
AA seq
2427 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQDIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECVSLISKPNFISTLCYTIDNPLHYQKSLKPSTHLFTQLSKVLK
LSKVQEVIFGLALLNSCNADLRGFAVQFVKQRLPDLLRSYVDADLGGNQEGGFQDIAIEV
LHLLLSHLLFGQKGASGVGQEQIDAFLRTLCRDFPQERCPVVLSPLLYPEKLDILMDRIL
PDSGELAKTMMESSLAEFMQEVGYGFCASLDECRNIILQYGVREVTASQVARVLGMMART
HSGLSDGIPLQSISAPGSGIWSDGKDKGDGSQAHTWNVEVLIDVVKEVNPNLNFKEVTYE
LDHPGFIIRDSKGLQMVVYGIQRGLGMEVFPVDLIYRPWKHAEGQLSFIQHSLMSPDVFC
FADYPCHTVAIDILKAPPEDDNREIATWKSLDLVESLLRLSEVGQYEQVKQLFSFPIKHC
PDMLVLALLQISTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
SMAEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGVSGEPFIQACVTFLKRRCPSIIGGLALEKDQPKSALLPPETMATMLGCLQS
CAGSVTQELSETILTMAANCSNVMNKARQPPPGVMPKGRAPSTSSLDAISPVQVSVSPLQ
MDPLTAMGSLNLGSSATSHTQSMQGFPTPLGSAFSNPQSPAKAFPPLSNPSTPFGGIGSL
SSQLGNPGPLGSGICSGIGSGLGMPAVSSDPFGTRKMSTPGLNPPTFQQSKMASDLSQVW
PEANQHFSKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLR
NLFEEYRFFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYF
GIAALDRFKNRLKDYPQYCQHLASIGHFLQFPHHLQECVQYIEYGQQSRDPPVKMQGSIT
TPGSLALAQVQALSQPPKAPQPGQPSTLVTTATTTTTVAKNTTITRPTPGSFKKDVPPSI
NTTNIDTLLVATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWV
SQYLVMKRVSIEPNFHSLYSNFLDTLKNPEFVKMALNETYRNIKVLLTSDKAAANFSDRS
LLKNLGHWLGMITLAKNKPILYTDLEVKSLLLEAYVKGQQELLYVVPFVAKVLESSLRSV
IFRPQNPWTMAIMNVLAELHTEHDLKLNLKFEIEVLCKNLSLDINDLKPGTLLKDKDKLK
SLEEQLSAPKKEAKPPEEMLPVVSTGIQHFQIGMPLVGDFLPFAAAPSTPAATTTCSATG
PPTPQFSYHDINVYALAGLAPHINININIPLLQAHPQLKQCVRQSIERAVQELVHPVVDR
SIKIAMTTCEQIVRKDFALDSEESRMRVAAHHMMRNLTAGMAMITCREPLLMSIATNLKN
SFAAALRAPTPQQREMMEEAAARVAQDNCELACCFIQKTAVEKAGPEMDKRLATEFELRK
HARQEGRRYCDPVVLTYQAERMPEQIRLKVGGVDPKQLAVYEEFARNVPGFLPSNDLSQP
TGFLAQPMKQQAWATDDVAQIYDKCMADLEQHLHAIPPALAMNPQTQALRSLLEAVALAR
NSRDGIAALGLLQKAVEGLLDATSGADADLLLRYRECHLLVLKALQDGRAYGPQWCNKQI
TRCLIECRDEYKYNVEAVELLIRNHLVNMQQYDLHLAQSMENGLHYMAVAFAMQLVKLLL
VDERSVSHITEADLFHTIETLMRTSAHSRANAPEGLPQLMDVVRSNYEAMIDRAHGGPNF
MMHSGISQASEYDDPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILK
TDDLITRFFRLCTEMCVEISYRAQAEQQHNPAASAAIIRAKCYHNLDAFVRLIALLVKHS
GEATNTVTKINLLNKVLGIVVGVLIQDHDVRQTEFQQLPYHRIFIMLLLELNAPEHVLET
INFQTLTAFCNTFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLID
LFKYLAPFLRNVELNKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRN
LILSAFPRNMRLPDPFTPNLKVDMLSEINIAPRILTNFTGVMPSQFKKDLDSYLKTRSPV
TFLSELRSNLQVGGATLGPWKYLQHNDTSLDQVSNEPGNRYNIQLINALVLYVGTQAIAH
IHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTML
YLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWSHDFVHCAPEI
EKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7284 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggctttgtctcaaatcagctacttggtggacaattta
actaagaaaaactacagagccagccagcaggatatacaacatattgtgaatcgtcacggc
cctgaggcagacaggcatttgttacgctgtcttttctcccatgtggatttcagtggcgat
ggtaaaagcagtggcaaagatttccatcagacacagtttctgatccaggagtgtgtttca
ctgatttcaaagccaaattttatttcaacactctgctacacaatcgacaatcccttgcac
taccagaagagtttgaagccttccacccacttgtttactcagttgagtaaagttctcaag
ctaagcaaggttcaagaagttatatttggccttgctttgctgaattcgtgcaacgcagac
cttcgtggttttgccgtgcagttcgtcaaacaaagactcccggacctcctccgctcgtac
gtggacgcggaccttggaggaaaccaggaaggtggcttccaagatattgccatagaggtc
ctgcacctgctcctctctcatcttctttttggacagaagggagccagcggggtaggacaa
gagcagattgacgctttcctcaggaccctgtgcagagatttcccgcaggagcgctgccct
gtggtgctctcaccactgctataccctgaaaaactggacattctgatggacaggattctg
ccagactcgggagagttggccaagaccatgatggagagttctctcgcagagttcatgcag
gaagttggctatggcttttgtgcaagtctcgatgaatgccgcaacataatcctacagtat
ggggtgcgagaggttactgccagccaggtggccagggtcctggggatgatggctcgcacc
cactctggcttgtctgatggaatccccctacagtccatctcggctccgggcagtggcatt
tggagcgatggaaaggacaaaggtgatggctctcaggcgcacacctggaatgtagaagtt
ctaattgatgtggtcaaagaagttaaccccaatctgaactttaaagaggtgacctatgag
cttgaccaccctggcttcataatccgggacagcaagggactgcagatggtggtgtatggg
atccagaggggcctgggcatggaagtgttccctgtcgacctaatctaccgtccctggaag
catgctgaaggacagctgtcattcatccagcactccctcatgagcccagatgtgttctgc
tttgctgactacccctgccacaccgtagcaattgacatactgaaggccccacctgaggac
gataaccgagagatagccacctggaagagcctagacctggtggaaagcctcctgcgcctc
tctgaggtgggccagtacgagcaggtaaagcagctcttcagcttccccatcaagcactgt
cccgacatgctggtgctggcgctgctgcagataagcacctcctggcacaccctgcgccac
gagctcatctccaccctcatgccaatcttcctgggcaaccaccccaactctgctatcatt
ttacactacgcctggcatggacagggccagtccccctctatccgtcagctgatcatgcac
tcaatggctgagtggtacatgagaggggagcagtacgaccaggccaagctctcccgcatc
ctggatgtggcccaggacttgaagtctctatctatgctgcttaatggtactccatttgcc
ttcgttatcgaccttgctgcacttgcctctcgccgtgaatacctcaaacttgacaaatgg
ctgactgacaaaatccgggagcatggggtgagtggtgagcccttcatccaggcgtgtgtt
acattcctgaagagacgttgtccctctatcattggtggtctggccctagaaaaagaccag
cccaaaagcgccctccttcccccggaaacgatggctaccatgctgggttgtctgcagtcc
tgtgcagggagcgtcactcaagagctctccgagactatcttgaccatggctgccaactgt
agcaacgtcatgaacaaagcccgccagccgccaccaggggtcatgccaaagggacgtgct
cccagcaccagcagcctagatgcaatttcccctgtgcaagtgtcggtgtctcctctccag
atggatcccctgacagccatgggctccctcaacctgggcagctctgccacttctcacaca
cagagtatgcagggctttcccaccccgctgggctctgctttcagcaacccccagtcccca
gctaaggccttccctccactgtctaaccccagcacaccatttggggggattggaagtctc
tcttcacagctaggtaacccaggtccgctgggatcaggcatttgctctggtattggttct
ggtcttggaatgccagcggtgagcagtgatccgtttgggacaaggaagatgagcacacca
ggcctgaatccacccacctttcagcagagtaagatggcctctgacctatctcaggtgtgg
ccagaggctaaccagcactttagtaaggagattgacgatgaggctaacagctacttccag
cgcatctacaaccaccccccacaccccaccatgtctgtggatgaggtgctggagatgctg
caaaggttcaaggactccaccatcaagcgagagcgtgaggtctttaactgtatgttgagg
aacttgtttgaggagtaccgcttcttcccccagtaccctgacaaggagctacacatcacc
gcctgcctgttcggggggatcattgagaaaggccttgtcacctacatggccctcggactg
gcccttcgatatgtactcgaagccttgaggaagccatttgggtccaaaatgtattacttt
ggaatcgctgctctagatagattcaaaaatagactgaaggactatccccaatattgtcag
cacttggcctcaatcggccactttctgcaattcccccatcatttacaagagtgcgtgcag
tatatcgagtatggccaacagtcacgggaccctccggtgaagatgcagggatccatcacc
accccaggaagcctggcgctggcgcaagttcaggccttgtctcagcctcccaaagccccc
cagcctggacagcccagcaccctggtcaccacagctaccaccaccaccactgtcgccaaa
aacactaccatcacccggcctacccctggcagcttcaagaaggatgtgccgccttcaatc
aacaccacaaacatcgacacacttctagtagcaacagaccaaaccgagaggattgtggaa
cccccagaaaatgttcaagagaaaattgctttcatcttcaataacctgtcacaatccaac
atgacacagaaggttgaggagttaaaggagactgtcaaagaggagttcatgccctgggtc
tctcagtatctggtcatgaagagggtcagcattgagcccaacttccacagcctgtactcc
aacttcttggacaccctgaagaacccagagtttgtcaaaatggccctgaatgaaacttac
agaaacatcaaggttctccttacctctgataaggcagctgcaaacttctctgatcgatcc
ctactgaagaatttgggtcactggcttggtatgatcactctggctaaaaacaagcccatc
ctgtacacagatttggaggtgaaatccctgttgttggaagcgtatgtcaaggggcagcag
gagctactctatgtggtcccgtttgtggccaaagtcctggaatccagtttacgtagcgtg
atttttcgaccccagaatccctggacgatggccatcatgaatgttctggcagagctgcat
acagagcatgatctcaagctgaacttgaagtttgagattgaggtgctgtgtaagaactta
tcattggacatcaatgacctgaagcctggcacccttctgaaggacaaagacaagttgaag
agcctggaggaacagctctctgcaccaaagaaagaggccaagccccctgaagaaatgctc
cctgttgttagcacaggtatccagcactttcaaattgggatgccccttgtcggagacttt
cttccatttgcagctgcgccatccactcctgccgcaaccaccacttgctcagctactggt
ccccctaccccacagtttagctatcatgacatcaatgtgtacgcccttgcagggctagcc
cctcacatcaatatcaacatcaatatccccttgctccaagcccaccctcagctgaagcag
tgtgtgagacagtccattgagcgggccgtgcaggagcttgtccaccctgtggtggaccgt
tccatcaagatcgccatgactacctgcgagcagattgtcaggaaggactttgccctggac
tccgaggagtcgcgcatgcgtgtggctgcccatcacatgatgcgtaacctgaccgctggc
atggccatgatcacctgccgggagccccttctcatgagtatcgctaccaacctgaagaac
agctttgccgcagccctcagggctcccaccccccagcagagagagatgatggaggaggct
gctgctagggttgcccaggacaactgtgagctggcctgctgcttcattcagaagactgca
gtggagaaggctggcccagagatggacaagagactggccacggagtttgagctgaggaag
cacgcccgtcaggagggtcgtcgctactgcgaccctgtggtgctgacctaccaggcagag
cgcatgccagaacagatcagactcaaggttggaggagtagaccccaaacagctggcggtg
tacgaggagtttgccaggaatgttccaggcttcctacccagcaacgacctgtctcagccc
actggattccttgcccagcccatgaagcaacaggcatgggccacagacgatgtggctcag
atttatgacaagtgcatggcggacctggagcagcacctccatgccatccccccagcgctg
gccatgaacccccagactcaagccctgcgcagtctgctggaggcagtggccctggccagg
aactcccgggatggcattgctgctctgggcctgctgcagaaggctgtggagggtctgctc
gatgccaccagtggtgccgatgctgacctgctcttgcggtacagagagtgtcacctgctg
gtgctcaaagccctccaggacggacgggcatacggaccacaatggtgcaacaaacagatt
accaggtgcctgattgagtgccgtgatgagtacaagtacaatgtggaggctgtggagctg
ctgatcagaaaccacctggtcaacatgcagcagtacgacctgcacctggcacagtctatg
gagaacggtctgcactacatggcagtggcatttgccatgcagctggtaaagctgctgctg
gtggatgagcgcagtgtgagccacatcacagaggccgacctgttccacaccatcgagact
ctgatgagaaccagcgcacactctagggccaatgcacctgaggggcttcctcagctgatg
gatgtggtccgctctaactacgaggccatgatcgaccgggcccatggaggacccaacttt
atgatgcactctggcatctcccaagcgtctgagtacgacgacccgccgggcctgagggag
aaggcggagtacttgctgagggaatgggtcaacctgtaccactctgcagccgcaggccgg
gacagcaccaaggccttttctgcttttgtgggccagatgcaccagcagggcattctgaag
accgatgacctgatcacacgtttcttccggctgtgcacagagatgtgtgtggagatcagc
taccgcgcccaggccgagcagcagcacaatcctgcggccagcgccgccatcatcagagcc
aagtgctaccacaacctggacgcctttgttcgcctcatcgctctgctggtcaagcactct
ggagaggccaccaacacagtcaccaagatcaacctgctcaacaaggttctaggtattgtg
gttggagtgctgatccaggaccatgatgtaagacagacagagtttcagcagttgccttac
caccgcatcttcatcatgctgctgcttgagctcaatgcccccgagcatgtgctggagacc
atcaacttccagaccctcactgccttctgcaacactttccacatcctgaggcctaccaaa
gcccctggctttgtctacgcttggctggagttgatctctcaccggatcttcatcgccagg
atgctggcacacacccctcagcagaagggttggcccatgtatgcccagctactcattgat
cttttcaaatacctagcgcccttcctgaggaatgttgagctcaacaaacctatgcaaatc
ctctacaagggtaccctgcgtgtcctgcttgtcttgctgcatgacttcccagagttcctg
tgtgactaccactatggcttctgtgatgtcatcccgcccaactgcatccagctccgcaac
ctgatcctgagtgccttcccacgtaatatgagacttccagaccccttcactcccaatctg
aaggttgacatgctcagcgagatcaatattgctccacgcatcctcactaacttcaccgga
gtgatgccctctcagttcaagaaggatctggactcgtacctcaagacgcgctcccctgtc
accttcctctctgagctccgcagcaatctgcaggtagggggcgccactctgggtccctgg
aagtatttgcagcacaacgacacatctttagaccaggtgtcaaatgagccaggcaatcgt
tacaacatccagctgatcaatgcactggtgctgtatgtggggacccaggccatcgcacac
atccacaacaagggcagcactccctccatgagcaccatcactcactcagcccacatggac
atcttccagaacctggctgtggacctggacactgaggggcgctatctcttcctgaatgcg
attgctaatcagctgcgctacccaaacagccacacccattacttcagctgcaccatgctc
tacctgtttgctgaggccaacacggaggcaatccaggagcagatcaccagggttcttctg
gagaggctgattgttaacaggcctcacccctggggactgctcatcacgttcatcgagctc
atcaagaaccctgccttcaagttctggagccacgactttgtgcactgtgccccggagatc
gaaaagttgttccagtcagtggctcagtgctgcatggggcaaaagcaggctcagcaggtg
atggagggcactggtgccagttag
DBGET
integrated database retrieval system
