Oncorhynchus gorbuscha (pink salmon): 124035922
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Entry
124035922 CDS
T07892
Name
(RefSeq) cyclic nucleotide-gated cation channel beta-1-like isoform X1
KO
K04952
cyclic nucleotide gated channel beta 1
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo04744
Phototransduction
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09150 Organismal Systems
09157 Sensory system
04744 Phototransduction
124035922
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ogo04040
]
124035922
Ion channels [BR:
ogo04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
124035922
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
cNMP_binding
Motif
Other DBs
NCBI-GeneID:
124035922
NCBI-ProteinID:
XP_046205780
LinkDB
All DBs
Position
LG05:complement(37659856..37740204)
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AA seq
2086 aa
AA seq
DB search
MFSWVVKGVPQPPGKLGDEEKTNASPATVKQVTFKEEKKQEALKPAKAKEEEVTEETGGE
AGVLTWITHGFANSLPQPAGTPRLGRANTEPSTTQEENRQGSSVIGWIAQGLASVVPQPE
LKNMEEVEPAETTEIAEVIKVPEVKKKPSIAEVSKAPEVKKKPSIAEVSKAPEVKKKPSI
AEVSKVPEVKKKPSIAEVSNAPEVKKTPTVHAIQDVPDAEPLPHIPVVEVMSDEEPQEEK
GIPPRVYEWIKQGFEKVVPQPADNKDVSAKAACPQKVTSKSPEAEEEAKANVVGWIVQGF
GRMLPQPVLTPSGSENGVQNILILQGHEDMVLEEVDPDWEEKENKVAQGAALLQALPSLI
PQQVLEMQQEAEDAETQTERWTPLIESIKKEAEEAAMVKVEEKLQQQLKEARMAEEVARQ
AAEMAVRQLEEEQAASAQRATDSQQETDGEQLPNIQEEENEEDPELQMLQAESDGIMDIE
SPEENKITEDNKIPIQIHFNEDKRVASEENIVTEEVTVFEKIVPKTEDNMTRQDSTISET
KIIEVTITEEMKNLEQNTALVACEVSKESHFHEDTKVVPEENIITDDKISEETKVTEENE
NPDKAKVSAVTDAEKVKIIEQSMTTQDNKISKEKNVHENKKVAADENVVTEENIPMVTVN
EVIRNVEQNTTAVEDIVIGEEISETEVTEEKKSPDDNKIPEVTDEVIEVIEEIIQNAGEN
TTKQENKMSEETTGQVEYKGPDKNKTKVTAVEKIKIEESILTPDIKIPEGKHVNKDKTSS
DRNIAVGEMAVGEMICAETKGAEENENPDKEKVTEVTVVEKIKTVEENTIIQHNKIFEDK
NINEDKKVAAEENSIVSKETKVTEVTVTEDYDQNMTTVENIVSGEEIYETEVTEENKSPD
DNKIPEVTDEVIEVIEEIIQNAGENTTKQENKMSEETTGQVEYKGPDKNKTKVTAVEKIK
IEESILTPDIKIPEGKHVNKDKTSSDRNIAVGEMAVGETISAETKGAEENESSEENKIPS
FTDEITVVEETETDEGITTTQDNKISIDNQITEEVTVIVKIKMNEQNTMREISNKKTIDE
ARNVAEEKIVTVENKISRANRCPGKNKIAEVSVIITITEDSQISEEKTVNQDINVAEENI
VVEDHIDALELTEDNKITELKLLHESDESMENKSPEKNKAIEVTVVENILSVEDNTLMDI
VVAEDNEISEDNKVKAVEPKVENKITEVDLKRCLMDVCPAEGLSEVEAEAESVESSPPVS
TPREASPEPEPQNKQSPSAAVTEQPEPADQKTPPTAATQEEESADEAGCEGSVGKDRGGN
VLPVVKVEDVDRDVGMRGGLNIPQIITSQDPLSISLTVSLPPGTKRSKAVAADGSLLPVE
ERSAEEDDIFGVDDLEMQTGLLTVEDGDRPASAASYGSVIVQERVTTLVKLFKARTVRKK
EKLMDPDESEEDSPQTSPAKAPPPPPPPEDDKDISAPVEEEEEEEYWDFYGYPIKIIKLP
KMPPLPSWLQTIVDYRFPSSIDPYTDLVYVVWLFFVMMAWNWNVWLIPVRWAFPYQTADN
IYWWLLMDYTCDLIYITDILVFQPRLEFVRGGDIVCDKKDMRDNYMTTERFKMDCVSMFP
MEIFYYFTGVNSLLRFPRLLKYMAFFEFNDRLEAVMKKAYIYRVILTTSYLLYSLHINAC
LFYWGSDYEGLGSTKWVYNGKGNSYIRCYYFAVKTLITIGGLPDPTTVFEITFQLVNYFV
GVFAFSIMIGQMRDVVGAATAGQNYYRACMDNTIKYMTSYHIPTEVQNRVKTWYDYTWKI
QGMLDEQELLIQLPDKMRMDMAVDVNYSIVSKVALFQGCDRQMIFDMLMRLKSVVYLPGD
FVCKKGEIGREMYIIKQGEVQVVGGPDLKTVFVTIRAGSVFGEISLLAGGGGNRRTANVM
AHGFANLFILDKRDLSDILVHYPESQKLLRKKAKKMLTKDKKPEEKAEVKDTAEVIPDRP
ETPKLFKAALVITEQAGIKGTFAKLKEGYKPTETESSGLPIPPPSPMVHRRSPIPPTDAQ
VEDDEDAVSETTDSMMLIRMTRRHKGEELLSVEQKPGDEEEEMEKK
NT seq
6261 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctgggtggtgaagggggttccccagcctcctgggaaactaggagatgaggag
aagaccaatgcctcacctgcaacagtaaaacaagtaacattcaaagaagagaagaaacaa
gaagctctaaaacctgccaaggccaaagaggaggaggtcaccgaggagactggtggtgag
gctggagtgttgacttggatcacccatggctttgctaattctcttccccagcctgctggg
acaccccggctaggcagagccaacactgagccctccaccacacaggaggagaacagacag
gggtcgagcgtcatcggctggattgctcagggattggccagtgtggttccacagcctgaa
ttgaaaaacatggaggaggtggagcctgcagagacaacagagattgcagaggtgatcaag
gtgccggaggttaagaaaaaacctagcattgcagaggtgagcaaggcgccggaggttaag
aaaaaacctagcattgcagaggtgagcaaggcgccggaggttaagaaaaaacctagcatt
gcagaggtgagcaaggtgccggaggttaagaaaaaacctagcattgcagaggtgagcaat
gcgccggaggttaagaaaacacctaccgtgcatgctatccaagatgtcccagatgcagag
cctcttcctcatattcctgtggtggaggttatgtcagatgaagagcctcaagaagagaag
ggaatcccacccagggtgtatgagtggatcaaacagggttttgagaaggtggttccacag
ccagctgacaacaaagacgtctcagcgaaggccgcctgcccacagaaagtgacctccaaa
tctccggaagctgaagaggaggccaaagcaaatgtggtgggctggattgttcagggcttc
ggtcgtatgttacctcagcctgtcctgactccaagtggatcggagaacggtgttcagaac
atcctcatcctgcaaggccatgaagacatggttctggaggaggtggacccggattgggag
gagaaggagaacaaagtggctcagggagcggccctgctccaggccttaccctcactcata
ccccagcaggttctggaaatgcaacaagaagcagaagatgcagagacacagacagagaga
tggactcccctcatagagagcataaagaaagaggcagaggaggctgctatggtgaaagtg
gaggagaagctgcagcagcagttaaaagaagcacggatggctgaggaggtggccagacag
gcggctgagatggcagttagacaactagaggaggagcaggctgccagtgcccagagggcc
acagactcacagcaagagactgatggagagcaactgcccaatatccaggaggaagagaac
gaggaagaccctgagttgcagatgcttcaggcggagagcgacgggatcatggacattgag
agtcccgaagagaataagataaccgaggacaataagatacctattcagattcatttcaat
gaagacaaaagggttgcatctgaggagaatatagtaacagaggaggttacggtatttgag
aaaatagttccaaaaactgaagataatatgactagacaggatagtacgatatctgagacg
aaaataatagaggttacaatcactgaggaaatgaagaaccttgaacagaatacggcccta
gtggcgtgtgaggtatcaaaagagagtcatttccacgaagacacaaaagttgttcccgaa
gagaatataattactgacgataagatatctgaggagacaaaagtaacagaggaaaatgaa
aatccggacaaggctaaagtatctgcggttacggacgctgagaaagtcaagatcattgaa
cagagtatgaccacacaagacaataagatatcgaaggagaaaaatgtacacgaaaacaaa
aaagttgctgctgatgagaatgtagtcactgaagagaatatacctatggtaacagtcaat
gaggtcatcaggaatgttgaacagaatacaaccgcagtggaggatatagtcataggagag
gagatatctgagacagaagtaacagaggaaaagaaaagtcctgacgataacaaaatacca
gaggttacagatgaggttattgaggtcattgaggaaatcattcagaacgctggagaaaat
accacgaaacaggaaaataagatgtcagaggagacaacaggtcaagtggaatataaagga
cctgataagaataagacaaaggttactgccgttgagaaaattaagattgaagagagcatc
ctaacaccggatatcaagatacctgagggaaagcatgtaaataaggacaagacatcttct
gataggaatatagcggttggagagatggccgtcggagagatgatttgtgcggagactaaa
ggagcagaggaaaatgaaaatcctgacaaggagaaagtaacagaggttaccgttgttgag
aaaattaagacggttgaagagaacaccattatacaacacaataagatatttgaggacaaa
aatataaacgaagacaaaaaagttgctgctgaggagaatagtatagtctctaaagagacg
aaagtaacagaggttacagtcacagaagattatgatcagaatatgaccacagtggagaat
atagtcagtggagaggagatatatgagacagaagtaacggaggaaaataaaagtcctgac
gataacaaaataccagaggttacagatgaggttattgaggtcattgaggaaatcattcag
aacgctggagaaaataccacgaaacaggaaaataagatgtcagaggagacaacaggtcaa
gtggaatataaaggacctgataagaataagacaaaggttactgccgttgagaaaattaag
attgaagagagcatcctaacaccggatatcaagatacctgagggaaagcatgtaaataag
gacaagacatcttctgataggaatatagcggttggagagatggccgtcggagagacgata
tctgcggagactaaaggagcagaggaaaatgaaagttctgaggaaaataagattccatcg
tttacagacgagattaccgtcgttgaggaaacggagactgatgaaggcattacgaccacg
caggataataagatatctatagacaatcaaataacagaagaggtgacagtcattgtgaaa
attaaaatgaatgaacagaatactatgcgggaaatatccaataagaaaacaatcgatgaa
gccagaaatgttgcagaggagaaaatagtaactgtagagaataagatatctcgggcgaac
agatgtcctgggaagaataagatagcagaagtttcagtcattattacaatcactgaagac
agtcaaatatcagaggagaaaacggtcaaccaagacataaatgttgctgaggaaaatatt
gtcgttgaggaccacattgacgctttggagcttacagaggacaataagatcactgagttg
aaactgcttcacgagagcgacgagagcatggagaataaaagtcccgagaaaaataaagcc
atagaggttactgtcgttgagaatattctgagcgttgaagacaatactctgatggatatt
gtagttgctgaagacaatgagatatctgaagacaacaaagttaaagctgtggagcctaaa
gtggaaaataagatcaccgaagtggacctgaaaaggtgcctgatggatgtgtgtccagcc
gaggggttgtccgaggttgaggcagaggcggagtcagtcgaatcaagccccccagtgtct
acccccagagaggcctccccagaaccagagccgcaaaataaacagtctccctcagcggca
gtgaccgaacagccagaaccagctgaccagaagactccacccactgccgcaactcaggaa
gaggaaagtgccgacgaagcagggtgtgaagggagcgttggaaaggacagaggagggaat
gtgctgccagtggttaaagtggaggatgtggacagagacgtagggatgagagggggtctc
aacatcccccagatcatcacctcccaggatcccctgtccatatctctgaccgtgtctctc
ccccccgggaccaagcgcagcaaagctgtggctgcagatggctcgctcctcccggtagaa
gagagaagtgctgaagaggatgatatttttggtgttgatgacttggagatgcagaccggc
ctcctgactgtggaagatggggatcgtccagcatcagcggccagctatggcagtgtgatt
gtccaagagagagtgactacactggtcaagctgtttaaggcgaggacggtccgcaagaag
gaaaaactgatggaccctgacgaatctgaggaagacagccctcaaacctccccagccaag
gcgccccctccccctcctcccccagaagatgacaaggacatctcagccccggtggaggag
gaagaggaggaggagtactgggacttctatggatacccaatcaaaatcatcaaacttccc
aaaatgcccccacttcctagttggcttcaaaccatagtggactatcgtttcccttccagc
atcgacccttatactgacctggtctacgtggtgtggctgttctttgtgatgatggcgtgg
aactggaacgtgtggctgatcccggtgcgctgggccttcccctaccagactgcagacaac
atctactggtggctgttaatggactacacctgtgaccttatttacatcaccgacatcctg
gtctttcagccccgcctggagtttgtacgcggaggagatattgtgtgtgacaaaaaggac
atgagagacaactacatgacaacagaacgattcaagatggattgtgtcagtatgttcccc
atggagatattttactactttactggcgttaactcccttctcagattcccccgcctactg
aagtacatggctttctttgagttcaacgaccgtttggaagcagtcatgaagaaagcctac
atctacagagtgatcctgaccacttcctacctgttgtattctctccacatcaacgcctgt
ctgttctattggggttctgactatgaggggctggggtccactaagtgggtctacaatggc
aaagggaacagttatatccggtgttactactttgctgtaaagaccctgatcaccatcggt
ggtctcccggacccaaccaccgtgtttgagatcacattccagctcgtcaactattttgtt
ggcgtctttgctttctccatcatgattggtcagatgagagatgtggtgggggctgccacg
gcgggtcagaactactaccgggcctgtatggacaacaccatcaagtacatgacctcctac
cacatccccacagaggtccagaaccgagtcaagacctggtacgactatacctggaaaata
cagggcatgctggatgagcaggagctgttgattcagctgccggataagatgaggatggac
atggctgtggatgttaactactccatcgtgagtaaagtggccctgttccagggctgtgac
agacagatgatctttgacatgttgatgaggctcaagtctgtggtctacctgcctggggac
tttgtctgtaaaaagggtgagatcggcagggagatgtatatcatcaagcagggggaggtt
caggtggtgggaggacctgatttgaagactgtgtttgtgacaatcagggccggctctgtg
tttggagaaatcagcttgctggcagggggcggggggaacagacgcacggccaatgtgatg
gctcacggattcgcgaacctcttcatcctggataagagggacctctcagacatcctggtg
cactaccccgagtcccagaaactcctccgcaagaaggccaagaaaatgctgacgaaggat
aagaagccagaggaaaaggccgaggtgaaggacactgccgaggtgatcccagacaggcca
gagacccccaagctgttcaaagcagccctggtgattacagaacaagcaggcattaagggc
accttcgccaagctgaaagagggctacaaacctaccgagactgagtcctctggactcccc
atacctcctccctccccgatggtgcaccgtcgctcccccatcccccctacagatgcccag
gtcgaggatgacgaagatgcggtttccgagacgaccgacagtatgatgctcatccgcatg
acacgccgtcacaaaggcgaggagctcctgtccgtcgagcagaagcctggagatgaagag
gaggagatggagaagaagtag
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integrated database retrieval system
