Oncorhynchus gorbuscha (pink salmon): 124036588
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Entry
124036588 CDS
T07892
Name
(RefSeq) replication factor C subunit 5-like
KO
K10756
replication factor C subunit 3/5
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03030
DNA replication
ogo03410
Base excision repair
ogo03420
Nucleotide excision repair
ogo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
124036588
03410 Base excision repair
124036588
03420 Nucleotide excision repair
124036588
03430 Mismatch repair
124036588
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ogo03032
]
124036588
03036 Chromosome and associated proteins [BR:
ogo03036
]
124036588
03400 DNA repair and recombination proteins [BR:
ogo03400
]
124036588
DNA replication proteins [BR:
ogo03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
124036588
DNA Replication Termination Factors
ELG1-RFC complex
124036588
Chromosome and associated proteins [BR:
ogo03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
124036588
DNA repair and recombination proteins [BR:
ogo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
124036588
Check point factors
HRAD17(Rad24)-RFC complex
124036588
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
Rad17
RCF1-5-like_lid
AAA_11
AAA_14
AAA_22
AAA_24
RuvB_N
AAA_16
AAA_assoc_2
ResIII
DEAD
DUF815
AAA_5
ATPase_2
PhoH
AAA_7
AAA_30
TIP49
AAA_19
AAA_2
Mg_chelatase
DNAX_ATPase_lid
Thioredoxin_6
Motif
Other DBs
NCBI-GeneID:
124036588
NCBI-ProteinID:
XP_046207297
LinkDB
All DBs
Position
LG05:83942538..83949844
Genome browser
AA seq
335 aa
AA seq
DB search
MASIGKIPLQSRNLPWVEKYRPQTLDDLISHKDILSTIQKFISEDRLPHLLFYGPPGTGK
TSTVLASAKQLYKEKEFNAMVLELNASDDRGIDVVRGPILSFASTRTIFKKGFKLVILDE
ADAMTRDAQNALRRVIEKYTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSQDQMIPRL
EFVIQQESIDVTPDGMKAIVTLSSGDMRRSLNILQSTSMAYGKVTEDNVYTCTGHPLRSD
IANILDWSLNKDFTSAYNQILQLKTLKGLALHDILTEVHLLIHRVDFPPAIRMGLLIKLA
DIEYRLASGTSEKIQLSSMVAAFQAVRDIVVNEAA
NT seq
1008 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgattggcaagataccgttgcagtcaagaaatttgccgtgggttgagaaatac
aggccacagaccctagatgacttgatttctcacaaggacatattaagcaccatccagaaa
tttatcagtgaggacaggctgccacatctcttgttctatggacccccaggcacagggaaa
acatctactgttctcgcctctgccaagcagctctacaaggagaaggagttcaacgctatg
gttctggagcttaatgcgtcagacgacagaggtatcgatgttgtacgaggacccatcctg
agttttgccagcaccaggaccatattcaagaagggtttcaagttggtgatactggatgag
gctgatgccatgacccgggatgcccagaatgcattgcggcgagtcattgagaagtacaca
gaaaacaccaggttctgtttgatttgtaactacttgtctaagatcatcccagccctacag
tctcgctgcaccaggttccgcttcgggcccctgtctcaggaccagatgatacccaggctg
gagtttgttatccagcaggagagcattgatgtaactccagatggaatgaaagctattgtg
accctgtcatcaggagacatgagaagatccctcaacatactgcagagcaccagcatggcg
tatgggaaggtcaccgaggataatgtgtacacctgcactggtcacccactacgatccgat
atcgccaacatcctggactggtcgctaaacaaggacttcacttccgcttacaaccagatt
ctccagctgaagacgctgaaaggcctagccctgcatgacatcctgactgaggtccaccta
ctgatccacagagtggacttccctcctgccattcggatgggcttgcttatcaagttggca
gacattgagtacaggctggcctctggaactagtgagaagatccaattgagttcgatggtg
gcggctttccaggcagtgagagacatcgtggtcaatgaggccgcctag
DBGET
integrated database retrieval system
