Oncorhynchus gorbuscha (pink salmon): 124048362
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Entry
124048362 CDS
T07892
Symbol
ift140
Name
(RefSeq) intraflagellar transport protein 140 homolog isoform X1
KO
K19672
intraflagellar transport protein 140
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
ogo03037
]
124048362 (ift140)
Cilium and associated proteins [BR:
ogo03037
]
Primary cilia and associated proteins
Intraflagellar transport (IFT) complex A
124048362 (ift140)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_IF140-IFT172
Beta-prop_IFT140_1st
Beta-prop_IFT140_2nd
TPR_IF140_C
Beta-prop_WDR19_1st
WD40_CDC20-Fz
Beta-prop_EML_2
ANAPC4_WD40
WD40_WDHD1_1st
Beta-prop_HPS5
TPR_GEMI5
TPR_IFT80_172
WD40_Prp19
TPR_COPA_B
Beta-prop_WDR90_POC16_2nd
WDR55
Beta-prop_EML
Clathrin
Beta-prop_CAF1B_HIR1
Beta-prop_WDR75_1st
RPN7
tRNA_int_end_N2
Consortin_N
Rax2
TPR_2
Motif
Other DBs
NCBI-GeneID:
124048362
NCBI-ProteinID:
XP_046225028
LinkDB
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Position
LG11:24421154..24475586
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AA seq
1472 aa
AA seq
DB search
MAVYFDHRIEAPESSGGPSQVAWHPTQPVLAVASNSPTTGGNIDLYLQQGEHVGSCHVDR
TFQPTVLCWHPTKPLLALGWETGEVLLLTHPSGEQTPLPATHTACITLLEWSSSGSRLIT
GDQMGVLALWKVDARGRLQGSHIVKHDYTKPLTYCIFRPAPPGEDVAMLARAAVGGDESA
LDMFNWRKAGNGPPLKMGPQEGLVFYVGTADGKVHCVDEHGRSSPVLSVDGSIQKLFYLK
RREVLAVVTETLLLSQYTLGPEGGAQELMKVKLSGKGGQSADIVSTETGLLITATGEQVI
RLWDLERDDNYVLSLDESLGFEKGEVLNCVSYCTAKEILAAGTNRGRIALWRMVSQPNTR
TDIKTQWKLQTPTEIEGNVTQLQWGSNLNLLAANSVTTVLILCEHVMSAHFGQQVAAVQL
TPSQLSLTMFNTNSHLTLRSDMHIKGVCVTKDTVTVWNGKQVTVYEPSGATLRNTGSFLC
ESQVLAVHDENIYTVEPNRVQVRTPQGTVKQLLAFSEAEGNPVLLSVCQGYLVVGTDTAH
IKVFDLTRREAKAHCSAKNLVDLTPNLGALKSVKCNANGNQVSILVTQVNGRPDHRMYFY
DVEMDTLSHFDFFTGRPPSGISQADDTERRPLTELSERCPVSHFWDENEPRLFVCETVLV
SSPQMDHLDRVDVLVVTFFCTQEHGLLLQDSYPKPAGLQALLALDVPYYYFTCKLLFRRG
GISLPEPGERDPETEEAQAPDPTQSPSLAQASAPAAQSPHMVSRRALRDFQGLENCEKAT
RDAMLNFSFYLTIGNMDEAFKSIKLIKSEAVWENMARMCVKNRRLDVARVCLGNMGNARA
ARALREAEAEPELEARVAVLALQLGMLEDAEKLYKSCGRFDLLNKFYQASGQWQKAVETA
ETHDRIHLRTTYYSYAKYLEAIGDKSMALVFFEKSDTHRFEVPRMLLDDALSLEIYVNKM
KDKNIYKWWAQYLESQSDMESALRYYEYAQDFLSLVRVHCYLGNIQKASEIANETGNRAA
SYHLARQYESQEEIKQSVHFYTRAQAYNNAIRLCKENGLDDQLMNLALLSNPEDMMEAAC
YYEEKGSHMDRAVMLYHKAGHFSKALEVAFATEQFAALQLIAEDLDETSDPALLARCSDF
FIKHGQYEKAVELLVAAKKYHEALQLCLDQSLTITEDLAESMTVTKESKDLSEEARKELL
ERIADCCMRQGNYHLATKKYTQAGNKLKAMRALLKSGDTEKIVFFAGVSRQKEIYIMAAN
YLQSLDWRKDPEIMKNIISFYSKGRALDLLAGFYEACAQVEIDDYQNYEKALGALTEAYK
CLSKAKGHSPDEHEARMAELQHKITLVKRFVQARRLYEEDPGEAVRLCEALLEEPDLDPA
VRIGDAYGFLVEHHCQRGSFQVAYRKLQDLQKLLPSLNISYYVSQGSLDALQRAVGVPLG
RGQLSGRGDRRDSGGEEDEVEEDEALVSHQGD
NT seq
4419 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgtactttgatcaccgtatagaggcccctgagtcaagcgggggcccctctcag
gtggcatggcatcccactcagcctgtactagcagtggcctccaacagccccaccaccggg
ggcaacatcgacctttacctccaacagggtgagcacgtagggagctgccatgtggaccgt
accttccagcccacggtgctgtgttggcaccccaccaagcctctgctggctctgggctgg
gagacaggcgaggtgctgctgctcacacacccctctggagagcagacgccgctgcccgcc
acacatactgcctgcatcaccctgctggagtggagcagctccggcagccgcctgatcacc
ggggatcagatgggagttctcgcgttatggaaggtggacgcccgaggaagactacaggga
agtcacatagtgaaacacgactacaccaagcccttaacctactgtatcttcagaccagca
cccccgggagaggatgtggcgatgctggcgcgggcggcagtgggcggggacgagagtgcc
ctggacatgttcaactggaggaaggctgggaatggaccgccgctcaagatgggtcctcag
gagggtctggtgttctacgtcggcacggcagacggcaaggtgcactgtgtggatgagcat
ggcaggagcagcccagtgctcagtgtggacggctccattcagaagctcttctatctgaag
aggagagaagtcctggccgttgtcacggaaacacttttgctgtcacagtacactctggga
cctgaggggggagcccaggagctcatgaaggtgaagctgagtggaaaaggtggccaaagc
gcagacatcgtttcaacagagacaggcctcctcatcacagctacaggggaacaggtcatc
aggctctgggacttggagagggatgacaactatgtgctttctctggatgagagccttggc
tttgagaaaggagaggtgttgaactgtgtctcctactgcacagccaaagagatcctagct
gcaggcaccaacagggggcgtatagctctgtggaggatggtgagccagcccaacaccagg
acagacatcaagacccagtggaaactacagacacccacggagatcgagggcaatgtcacc
cagcttcagtggggctccaacctgaacctgctggctgccaacagtgtgaccacagtgctg
atcctctgtgagcacgtcatgtctgcccacttcggccagcaggtggcagcggtacagcta
accccatctcagctcagcctcacaatgttcaacaccaactcccacctcaccctgcgttcc
gacatgcacatcaagggtgtctgtgtcaccaaggacacagtcacagtgtggaacgggaag
caggtcactgtgtacgaaccctcgggggcaactctacgcaacacaggctctttcctgtgt
gagtcccaggtcttagctgtgcatgatgagaatatctacactgtggagcccaatcgagtc
caggtccgcacaccacagggcacagtgaagcagctactagccttctctgaggccgagggc
aaccctgtgctgctcagtgtgtgtcagggctacctggtggtgggaacagacacagctcac
atcaaggtctttgacctcactcgcagagaagccaaggcccactgcagtgctaagaaccta
gtggacctgacccctaatctgggagccctgaaatcggtcaagtgtaacgccaacggcaac
caagtcagcatcctggtcactcaggtgaatgggagacctgaccacagaatgtacttctat
gacgtagagatggacacactgtctcactttgacttcttcactggtagaccgcctagtggc
atctcacaggccgacgacacagaaagacggccactgacagagctgagcgagagatgtcct
gtgtctcatttctgggacgagaacgagcctcgtctgtttgtgtgtgagacggtactggtc
agctctccccaaatggaccatctggacagggtggatgtgctcgtggtgacgtttttctgc
actcaggaacatgggctcctcctgcaggactcctaccccaaaccagccggcctgcaggcc
ctactggccctggacgttccctactactacttcacctgtaagctgttgtttcggaggggt
ggtatctctttaccagaaccaggtgagagggatccagagacggaggaggcccaagctcca
gaccccacccaatctccatccctggcccaggcctcagccccggctgcccagtccccccac
atggtgtccagacgagccctccgggactttcagggcctggagaactgtgaaaaggccacc
cgcgatgccatgctcaactttagcttctacctgaccatcggaaacatggacgaggccttc
aagtccatcaagctcatcaagagtgaggcagtatgggagaacatggcgaggatgtgtgtg
aagaaccggcgtctggacgtggcacgggtgtgtctgggcaacatgggtaatgccagggcg
gcgcgggcactacgggaggccgaggccgagcctgaactggaggccagggtagcagtactg
gcccttcaactgggcatgctggaggatgcagagaagctgtataagagctgcggccgcttc
gacctcctgaacaagttctaccaggcatctggccagtggcagaaggccgtggagacagcc
gagacccacgaccgtatccacctcaggaccacttactacagctatgccaaatacctggag
gccatcggagacaagagcatggccctcgtgttctttgagaagtctgacacccaccggttc
gaggtacccaggatgctcctagatgatgcactgtctctggagatctacgtcaacaaaatg
aaggacaaaaatatctataagtggtgggctcagtatctggagagccagtcagacatggag
tcagcactacgctactacgaatacgcacaggacttcctctctctggtccgcgtgcactgc
tacctggggaacattcagaaggcgtcggagatagccaatgagacggggaaccgtgctgcc
tcgtaccacctagcccggcaatatgagagtcaggaggagatcaaacagtctgtccacttc
tacacacgagctcaggcctacaacaacgccatccgcctctgcaaggagaatggtctggat
gaccagctgatgaacctggctctcctcagtaacccagaggacatgatggaggctgcctgt
tattacgaggagaagggttctcatatggaccgtgctgtcatgctctaccacaaggctggt
catttctccaaggctctggaggtggcctttgctacagaacagttcgctgcactgcaactc
atagcagaggacctggatgagacatctgacccggccctgctggcccgctgctctgacttc
ttcatcaaacacggccagtatgagaaggctgtggagctgcttgtggccgccaagaagtac
cacgaggccctgcagctgtgtctggaccagagcctgaccatcaccgaggacctggctgag
agtatgaccgtgaccaaggagtccaaagacctctcagaggaggcccgcaaagagctgctg
gagagaatagctgactgctgcatgcgccagggcaactaccacctagccaccaagaaatac
acacaggctggcaacaagctaaaagccatgcgggcgctcctgaagtcaggggacacagag
aagatagtgttcttcgctggcgtgtcacgtcagaaggagatctacatcatggccgccaac
tacttgcagtctctggactggcggaaagatccggaaatcatgaagaacattattagcttc
tactccaaaggcagggctctggacctgctagctggcttctatgaagcttgtgcccaggtg
gagatagatgattaccagaactatgagaaggcactgggtgctctgacggaggcctataag
tgcctttctaaagctaagggccacagcccagacgaacacgaggctcgcatggctgagctg
cagcacaagatcactctggtcaagaggtttgtccaggcacgcaggttgtatgaggaggac
ccaggggaggcggtgcgtctgtgcgaagccctgctagaagagccagacctggaccctgct
gtcaggataggagatgcatacggcttcctggtggagcatcactgtcagcggggcagcttc
caggtggcctaccgcaagctgcaggatctgcagaagctgctgccctctctgaacatcagc
tactacgtgagccagggcagcctggatgccctgcagagggcagtgggtgtacccctgggc
cgggggcagctctcaggcaggggagaccgacgcgacagcgggggagaggaagacgaggtg
gaggaggacgaagccctggtgtcccaccaaggggactga
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integrated database retrieval system
