Opisthocomus hoazin (hoatzin): 104328623
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Entry
104328623 CDS
T08436
Symbol
CNOT1
Name
(RefSeq) LOW QUALITY PROTEIN: CCR4-NOT transcription complex subunit 1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
oha
Opisthocomus hoazin (hoatzin)
Pathway
oha03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oha00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104328623 (CNOT1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oha03019
]
104328623 (CNOT1)
Messenger RNA biogenesis [BR:
oha03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104328623 (CNOT1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
104328623 (CNOT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
NOT1_connector
ARM_Cnot1
CNOT1_CAF1_bind
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
104328623
NCBI-ProteinID:
XP_009931952
LinkDB
All DBs
Position
Unknown
AA seq
2354 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFISTLSYAIDNPLHYQKSLKPSPHLFAQLSKVIK
LSKVQEVIFGLALLNSFSSDLRGFAAQFIKQKLPDLLRSYIDADVSGNQEGGFQDIAIEV
LHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGGIAKTMMESSLADFMQEVGYGFCTSVEECRNIIMQFGVREVTAAQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKSDGAQAHTWNVEVLIDVLKELNPSLDFKVVTYE
LDHPGFQIRDSKGLHIVVFGIQRGLGMEVFPVNAIYRPWKHAEGQLSFIQHSLINPDIFC
FADYPCHTVATDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFSFPIKHC
PDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
AMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACMTFLKRRCPSILGGLAPEKDQPKSAQLPPETLATMLACLQACAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRPPSASSLDAISPVQIDSLAGMASL
SLGGSAAPHTQSMQGFPPNLGSAFSTPQSPAKAFPPLSTQNQTTGFSGIGGLSSQLPGGL
TTGSLTGIGTGALGLPAVNNDPFVQRKLSTSGLNQPTFQQSKMKPSDLSQVWPEANQHFS
KEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSNIKREREVFNCMLRNLFEEYRF
FPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFASKMYYFGIAALDRF
KNRLKDYPQYCQHLASISHFIQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQAQ
AQAQVPAKAPLAGQVSTIVTTSTTTTVAKTITITRPTGVSFKKDVPPSINTTNIDTLLVA
TDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVSI
EPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLGM
ITLAKNKPILHTKIWMVAKVLESSVRSVVFRPPNPWTMAIMNVLAELHQEHDLKLNLKFE
IEVLCKNLALDINELKPGSLLKDKDRLKNLDEQLSAPKKDVKQPEELPPITTTTASTTPA
TSTTCTATVPPQPQYSYHDINVYSLGGLAPHITLNPTIPLFQAHPQLKQCVRQAIERAVQ
ELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRVAAHHMMRNLTAGMAMITCREPLL
MSIATNLKNSFATALRAASPQQRDMMEQAAAQLAQDNCELACCFIQKTAVEKAGPEMDKR
LATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLKVGGVDPKQLAVYEEFARNVPGF
LPTNDLTQPTGFLAQPMKQAWATDDVAQIYDKCMTELEQHLQSIPHTLAMNPQAQALRSL
LEAVVVARNSRDAIAALGLLQKAVEGLLDATSGADADLLLRYRECHLLVLKALQDGRAYG
SPWCNKQITRCLIEXXDEYKXNVEAVELLIRNHLVNMQQYDLHLAQSMENGLNYMAVAFA
MQLVKILLVDERSVAHVTEADLFHTIETLMRINAHSRGNAPEGLPQLMEVVRSNYEAMID
RAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQ
MHQQGILKTDDLITRFFRLCTEMCVEISYRAQAEQQHNPAANPTMIRAKCYHNLDAFVRL
IALLVKHSGEATNTVTKINLLNKVLGIVVGVLLQDHDVRQSEFQQLPYHRIFIMLLLELN
APEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWP
MYAQLLIDLFKYLAPFLRNVELTKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIP
PNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSEINIAPRILTNFTGVMPPQFKKDLDS
YLKTRSPVTFLSDLRSNLQVSNEPGNRYNIQLINALVLYVGTQAIAHIHNKGSTPSMSTI
THSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANTEAIQE
QITRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWNHEFVHCAPEIEKLFQSVAQCCMG
QKQAQQVMEGTGAS
NT seq
7065 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggccttgtctcaaatcagctacctggtggacaattta
accaagaaaaactaccgagccagccagcaggaaatacagcatattgtgaataggcacggt
cccgaggcagacaggcatttactacgctgtctattctcgcacgtggatttcagtggcgat
ggtaaaagtagtggcaaagatttccatcagactcaatttctgatccaggagtgtgcgtcg
ctgattacgaaaccaaactttatctcgacgctgtcctacgccattgacaatccgttgcac
tatcagaagagtctaaagccttcaccccatttatttgcccaattgagtaaagtcatcaaa
ttaagtaaagttcaagaggtgatttttggccttgccttactgaactctttcagctcggat
ctacgaggttttgctgcccagtttatcaaacagaaactcccggatcttttgcgctcttac
attgacgcggacgtcagtggaaatcaagaaggtggcttccaagatattgcaatagaggtc
ctgcaccttctcctctcccatctcctttttgggcagaagggagcctttggggtaggacag
gaacagattgacgcttttctcaaaacattacgtagagattttccccaggaacgttgccct
gtggtgcttgcaccacttctataccctgaaaaacgggacattctaatggacaggatcctg
cctgattctggagggatagccaaaaccatgatggagagttctctggcagatttcatgcaa
gaagttggctatggcttttgtacaagtgttgaagaatgtcgcaacataatcatgcagttt
ggtgttcgggaagtcacggctgcccaggttgccagggttttggggatgatggctcgaact
cattctggattgacagatggcattccattacaatctatttcggctcctggcagtgggatt
tggagtgatgggaaggataaaagtgatggagcacaagcgcacacctggaatgtggaggtc
ttaattgatgttctgaaagagctgaatcctagcctggacttcaaagtggtaacctatgaa
ttggaccatccgggatttcagattcgtgacagcaagggcctgcatattgtagtgtttggc
atccagagagggctaggcatggaggttttcccagttaatgccatatacagaccttggaag
cacgcagagggccagctctccttcattcaacattccctcataaaccctgacatcttctgt
tttgctgactacccttgtcatactgttgccacagatatcctgaaagcaccaccagaggat
gacaatcgagaaattgctacttggaagagcctggatttgattgaatctctgttacgattg
gcagaagtgggacagtatgagcaggttaagcagctcttcagttttcccatcaagcattgc
ccagatatgttggtattggccttactgcagatcaacacatcctggcataccttgcgccat
gaactcatctccacactcatgccaattttcctgggcaaccatcccaactctgccatcatc
ttgcactatgcatggcatggacagggtcagtctccttcgattcgtcagcttatcatgcat
gcaatggcagaatggtacatgagaggggaacagtatgaccaggcaaaattgtcacgtatt
cttgatgtggcgcaagacttaaaggccttgtcaatgctgctaaatggtactccatttgcc
tttgttattgaccttgctgcacttgcctctcgacgggaatacctcaaacttgacaaatgg
ctcacagataaaattcgggagcatggggagcccttcatccaggcctgtatgactttcttg
aagagaagatgtccatctatcctgggtggccttgctccagaaaaagatcagcccaaaagt
gctcaactgcctccagaaaccttggcgactatgctggcatgtctgcaagcttgtgctggg
agtgtttctcaggagctgtcggagaccatcctcaccatggtagctaactgcagtaatgtc
atgaacaaggcgagacagccaccccctggagtcatgccgaaaggccgcccgcccagcgcc
agcagcttggatgccatctctcctgtacagatcgactcgcttgcaggaatggcatcgctt
agtctaggtggctcagctgctcctcatacccagagcatgcaaggcttccctccaaacctg
ggctctgcgttcagtactcctcagtcaccagcaaaagcgtttccccctctttccacccaa
aaccagacaacaggtttcagtggcatcgggggactctcttcccagcttccaggtggtctt
actacgggtagcctgactggcataggaactggagccctgggccttcctgcggtgaacaat
gacccattcgtgcaaaggaagctgagcacatctggactgaaccagcctacattccagcag
agtaagatgaaaccttctgacttatctcaggtgtggccggaggctaatcagcactttagc
aaagaaatagatgatgaggcaaacagctacttccagcgtatttacaaccatccaccacat
ccaaccatgtccgttgatgaggtcttggaaatgctgcagaggtttaaggactcaaatatt
aaacgggagcgagaagtgttcaactgtatgctgaggaacttgtttgaggaataccgtttc
tttccccagtacccagataaagagctgcacataacagcctgcctctttggtgggataata
gagaaaggactggttacttatatggcattgggcctggccctgcgctatgttcttgaagcc
ttacgaaagccttttgcatccaaaatgtactattttggtattgctgcactagatagattt
aaaaatagactgaaggactatccccagtattgtcagcacttggcttctattagtcacttt
atacagttcccgcatcatttacaggagtacatagaatacggacagcagtccagagatcct
cctgtgaagatgcagggttcaatcaccacccctggaagtattgcacttgcccaggctcag
gcccaggcccaagttccagcaaaagctcctcttgctggccaagtcagcactatagtaacc
acctcaaccaccaccactgttgcaaaaaccattacaatcacccgaccaactggagtcagc
ttcaagaaggatgtgccgccttccattaatactaccaacattgatacgctgttagtagca
acagatcaaacagagagaattgtggaacctccagagaatgtccaggaaaaaattgctttc
atcttcaataatttgtctcagtcaaatatgacacagaaggttgaggaattgaaggaaaca
gtgaaagaagagttcatgccttgggtatcacagtatcttgtgatgaagagggtcagtatt
gagcctaattttcacagcttatattcaaacttccttgacacgctgaagaatccagaattt
aataaaatggttctgaatgaaacctacagaaacatcaaggtgctactgacatcggataaa
gctgcagccaacttctcagaccgttccttgttaaagaaccttggtcactggctgggaatg
attacgctggctaaaaataagcccatcttgcacacgaagatttggatggttgccaaagtc
ttagaatccagcgtcaggagtgtggtcttcaggcctccaaacccatggacaatggccatt
atgaatgttttagctgagctacatcaagagcatgatctaaaattgaatctgaagtttgag
attgaggtgctctgcaagaatcttgcactagacatcaatgagctgaaacctggaagtctc
ctgaaagataaggatcgtctgaaaaatctggatgagcagctgtctgctccgaagaaggat
gtgaaacagccagaagagctaccacccatcacaacgactactgcttctacaactccagct
accagcaccacttgtacagccacggttcctccacagccccagtacagttatcacgacatc
aacgtctattctttaggagggttggctccgcatattaccttaaatccaacgattccgctg
tttcaagcccacccgcagctgaagcagtgtgtgcggcaggcaatagagcgagcagtgcaa
gagcttgtccatccggtggtcgatcggtccattaagattgccatgactacttgtgagcag
atagtcaggaaggactttgcgctggattcagaggagtcgcgaatgcgtgtggccgcacac
catatgatgcggaacctcactgctgggatggccatgattacctgcagggaacctttgctg
atgagcatagctaccaacctgaaaaacagttttgccactgcgctgagggcagcctcccca
caacagagggacatgatggagcaagcagctgcccagttagcgcaggacaactgtgagcta
gcatgctgctttatccagaagacagctgtggaaaaggcaggccctgagatggacaagagg
cttgcaactgaatttgagctcagaaaacatgctagacaagagggtcgtcggtactgtgat
cccgtggtgttaacttaccaggctgagcgaatgccagaacagatcaggttaaaggttgga
ggtgtggacccaaagcagctggctgtttatgaggagtttgcacgcaatgtccctggcttc
ttgcctaccaatgacttaactcagcctacaggattcttggctcagcccatgaagcaagct
tgggctacggatgatgtagcacaaatctatgacaaatgtatgacagaactggagcagcac
ctgcagtccatcccacacaccctagccatgaatcctcaagctcaagcgttgcgcagcctg
ttggaggctgtggtagtggctcgtaactcccgtgatgctattgctgcacttggactactg
cagaaggctgtggagggcttactggatgccaccagtggggcagatgctgacctcctgctt
cgctatcgcgagtgtcatctgctggtgctgaaggctctgcaggatggccgtgcatatgga
tctccgtggtgtaataaacaaattactaggtgcctgatcgaannnngagatgagtacaag
taaaatgtggaagctgtggagctgctaatccgcaatcacctggttaacatgcagcagtac
gaccttcacttggctcagtcaatggagaatggcttgaactatatggctgtggcgtttgcc
atgcagctggtaaaaatcctgctggtggatgagagaagtgttgcccacgtgacagaggca
gatctgttccacacgattgagacactcatgaggattaatgctcattccagaggaaacgcc
ccagaaggattaccccagctgatggaagtggtccgatcaaactatgaagcgatgattgac
cgtgctcacggaggtcccaatttcatgatgcattcgggaatttcccaagcctctgagtat
gatgatccgccaggtctgagggagaaggcagaatacctgctgcgggagtgggtcaacctc
taccattcagctgcagcgggccgtgatagtaccaaagcattctctgcgtttgttggacag
atgcaccagcaaggaatcctgaaaacggatgacctgatcacccgctttttccgtctttgc
accgaaatgtgtgttgaaatcagctatcgtgctcaggctgagcaacagcataatcctgct
gccaaccccactatgattcgagccaagtgctaccacaatctggatgcctttgtgcgactt
attgcactgctagtgaagcactctggggaggcaaccaacacagttacaaagatcaacctc
ctgaataaggttctcggtattgtggtgggagttcttctgcaagaccatgatgttcgtcag
agtgagtttcagcagcttccttaccatcgcattttcatcatgttgctgttggaattaaat
gctcctgagcatgtgctggagaccatcaacttccagacactcacagccttctgtaacaca
tttcacatcctgaggcctacaaaagctccaggttttgtttatgcctggctggaactcatc
tcccatcggatatttattgcaagaatgctggcacatacaccacagcagaagggttggcct
atgtatgcccagttactgatcgatcttttcaagtacttggctcctttccttagaaatgtg
gaactcaccaaacctatgcaaatcctttacaagggcactctgcgtgtgttgctggtcttg
ttgcatgatttcccagaatttctttgtgactaccactacgggttctgtgatgtgatccca
cctaactgtattcagctaaggaatctgatcctgagtgccttcccacggaacatgcggctt
ccagacccttttacccccaatctgaaggtggacatgttaagtgagattaatattgctcca
cgaatactgacgaatttcactggagtgatgccccctcagttcaaaaaagacttggattcc
tatctcaaaacccgttctccagtcacttttttgtctgatttgcgcagcaacctacaggta
tcaaatgaacctggcaaccgctacaacatccagctgattaacgcactggtgctctacgtc
ggtacacaagctattgcgcacattcacaacaaaggcagcacgccctctatgagcaccatt
acccactcggctcacatggacatcttccagaatttggcagtggacctggacactgaaggc
cggtaccttttcctgaacgcaatcgccaatcagctgcgataccccaacagtcacacgcac
tacttcagctgcaccatgctgtacctgtttgcagaggccaacacggaggctatccaggag
cagatcactagggttctcttggaacgactgattgtaaataggcctcatccttggggtctc
cttattacgttcattgagctgataaaaaacccagcgttcaagttctggaaccatgagttt
gttcactgcgctccagaaattgagaagctgttccagtcggttgcacagtgctgcatgggg
cagaagcaggcccagcaagtgatggaagggactggtgccagttag
DBGET
integrated database retrieval system
