Opisthocomus hoazin (hoatzin): 104338829
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Entry
104338829 CDS
T08436
Symbol
COL6A1
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(VI) chain
KO
K06238
collagen type VI alpha
Organism
oha
Opisthocomus hoazin (hoatzin)
Pathway
oha04510
Focal adhesion
oha04512
ECM-receptor interaction
oha04518
Integrin signaling
oha04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
oha00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
104338829 (COL6A1)
04518 Integrin signaling
104338829 (COL6A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
104338829 (COL6A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
104338829 (COL6A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
oha04147
]
104338829 (COL6A1)
00536 Glycosaminoglycan binding proteins [BR:
oha00536
]
104338829 (COL6A1)
Exosome [BR:
oha04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
104338829 (COL6A1)
Glycosaminoglycan binding proteins [BR:
oha00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
104338829 (COL6A1)
Hyaluronan
Extracellular matrix or blood plasma proteins
104338829 (COL6A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
VWA_3
DUF1194
DUF5507
Motif
Other DBs
NCBI-GeneID:
104338829
NCBI-ProteinID:
XP_009943208
LinkDB
All DBs
Position
Unknown
AA seq
1020 aa
AA seq
DB search
MRLRGFLLTLLLPAVFLGGSLWAQRPDIATRVASAEDCPVDLFFVLDTSESVALRVKPFG
DLVAQVKDFTNRFIDKLTSRYYRCDRNLVWNAGALHYSDEVVLIKSLTSMPSGQNELKNR
VSAVNYIGKGTYTDCAIKRGIEELLIGGSHHKENKYLIVVTDGHPLEGYKEPCGGLDDAA
NEAKHLGIKVFSVAISPHHLVSLCPPHPTTTGPAARRNFTAPSLKATRELDVEETINTII
DMIKANTEQSCCSFECQPPRGPPGPAGDPGNEGERGKPGLPGQKGEAGEPGRPGDMGPVG
YQGMKGDKGSRGEKGSRGAKGAKGEKGRRGIDGIDGMKGEAGYPGLPGCKGSPGSDGAQG
PPGPKGDPGAYGPKGGKGEPGDDGKPGRPGIPGSPGEKGAPGNQGEPGPAGETGDEGAPG
ADGPPGERGSNGEIGPPGSPGDRGPRGEPGEPGPPGDQGREGPLGPPGDQGEVGPPGPKG
YRGDDGPRGNEGPKGLPGARGLPGDPGLMGERGEDGPSGNSTVGFTGIPGQPGDRGDPGI
NGTKGYVGPKGDEGEAGDPGNDNPTPGPRGIKGAKGRRGPEGRPGPPGPVGPPGPDECEI
LDIIMKMCSCCECTCGPVDLLFVLDSSESIGLQNFQIAKDFIIKVIDRLSKDERVKFEAG
ESRVGVVQYSHDNTQELVAMGDANIDNIGALKQAVKNLKWIAGGTYTGEALQFTKDSLLR
RFTSDKRVAIVITDGRSDTLRDPTPLSSLCDVTPVVSLGIGDIFRTPPNPDHLNDIACLS
RPTRPGLSIQRDNYAELLDDTFLQNITSYVCQEKKCPDYTCPITFAGLADITLLVDSSTS
VGSKNFETRAXGGGFGGAGTPADDSVRVSVVQYSGRNQQKVEAQFQYNYTVIAKAIDNME
FINDATDVNAALRYVTGLYQRSSRPGAKKRVLVFSDGNSQGITARAIERAVQEAQQAGIE
IYVLAVGTQANEPNIRVLVTGKSADYDVVYGERHLFRVPDYTSLLRGVFYQTVSRKIAVD
NT seq
3063 nt
NT seq
+upstream
nt +downstream
nt
atgaggctgcgaggctttctactcactttgctgctcccagccgtcttcctggggggaagc
ttgtgggctcagcgcccagatatcgccacccgggttgcaagcgcagaagactgccccgtg
gacctgttcttcgtcctggacacctcagagagcgttgccctgagggtgaagccctttggg
gacctggttgcacaagtgaaagatttcaccaaccggttcattgataagctgacgagcagg
tactaccgctgcgaccgcaacctggtgtggaatgccggggcgctgcactacagcgacgag
gtcgtgctcatcaagagcctcacctcgatgcccagcggccagaacgagctgaagaaccgc
gtctccgctgtgaactacatcggcaagggcacctacacagactgtgccataaagcggggc
atcgaggagcttctcatcggtggctcccatcacaaggagaataaatacctgatcgtggtg
actgatggacaccccttggaagggtacaaggagccctgtggaggcctagacgatgctgcc
aacgaagccaaacatttgggaatcaaagtgttctccgtcgccatctccccccaccacctg
gtctcactctgccctcctcaccccacaaccacaggaccagcggctcgccgcaacttcact
gcccccagcctgaaggcaacccgggagctcgacgtggaggaaactatcaacaccatcatc
gacatgattaaagctaacacggagcaatcgtgctgttcctttgagtgccagcctccccga
gggcctccgggacctgctggcgacccaggcaatgagggagaaagaggcaagccaggtctt
cctggccagaaaggagaggctggagaaccaggaaggccaggggacatgggacctgttggc
taccaaggaatgaagggtgacaaaggaagtcgaggagaaaagggctcaagaggagccaaa
ggagccaagggtgagaaaggcagacgtggaatcgatggcattgatggcatgaagggtgaa
gctggataccccgggttacctggctgcaaaggctcacccggatccgacggagctcaaggc
ccgcctggaccgaagggagatcctggtgcttatggacccaagggaggaaagggggagcct
ggggacgacggaaaacctggtcggccggggattcctggcagccccggagagaagggcgca
cctggaaaccagggtgagcctggaccggccggagagacgggtgacgagggtgctccaggt
gcagatggtcctcctggagaacggggcagcaatggagaaataggccccccgggctcaccg
ggtgaccgcgggccaagaggagagccgggagagcctggaccacctggtgaccaagggcgg
gaaggacccctcggaccacctggcgaccagggcgaggttggacccccaggacccaagggc
tacaggggagacgacggcccccgtggcaacgagggcccaaagggactccctggagcacgt
gggctgcccggagaccccggcctgatgggagaaaggggagaggacggcccttctgggaac
agcacagttggattcacaggcatcccagggcagccgggagacagaggtgaccctggcatt
aatggaacgaaaggttacgttggtcctaaaggtgatgaaggagaagctggagaccctggc
aatgataacccaacccctggccccaggggcatcaaaggagcaaagggccgcaggggacct
gaaggccgcccaggaccacccggacctgtggggcctccaggaccagatgaatgtgaaatc
ttggacatcatcatgaagatgtgctcttgctgtgagtgcacctgcggtcccgtcgacctc
ctcttcgtgttggacagctcggagagcattggcctgcagaacttccagattgccaaggac
ttcatcatcaaagtcattgaccgcctgagcaaggacgagcgtgtgaagtttgaagctggt
gagtcacgtgtgggcgttgtacaatacagccatgacaacacgcaggagctggtggccatg
ggggatgccaacatagacaacattggggcactcaaacaggcagtcaaaaacctgaaatgg
atagctgggggcacctacactggagaagccctgcagttcaccaaggacagcctgctgcgg
agattcacctctgacaagcgcgtcgccatcgtcatcacggatggacgctccgacacactg
cgggaccccaccccgctcagctctctgtgcgatgtcaccccggtggtttcccttgggata
ggcgacattttccggacccccccaaatccagatcacctgaatgacatcgcctgtttaagc
agaccgaccaggccaggactgtccattcaaagagacaactatgctgagctcctggatgac
accttcctgcagaacatcacctcgtacgtctgccaagagaagaaatgcccagactacacc
tgcccaatcacctttgccgggctggcggacatcacactgctggtggacagctccactagt
gtggggagcaagaacttcgagaccagggcgnngggggggggtttcgggggggccggcacc
cctgccgatgactccgtgcgtgtctcggtggtccagtacagtggcaggaaccagcagaaa
gtggaagctcagttccagtacaactacacggtcattgccaaagccattgacaatatggag
ttcattaatgatgccacggacgtcaatgccgctctgcggtacgtcacaggcctgtaccag
cggtcctcccgtcctggggcaaagaagagggtgctggtgttttctgatggcaactctcaa
gggatcaccgcgagggccattgagagggctgtgcaggaagctcagcaggccggcatagag
atctacgtgctggcagtgggcacccaagccaatgagcccaacatccgtgtcctggtcacg
gggaagagcgcagactatgatgtggtctacggggagcgccaccttttccgtgtgccagac
tatacctctctgctgcgtggtgtcttctaccaaactgtctccaggaagatagctgttgac
tga
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