KEGG   Oceanobacillus iheyensis: OB3034
Entry
OB3034            CDS       T00093                                 
Name
(GenBank) hypothetical conserved protein
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
oih  Oceanobacillus iheyensis
Pathway
oih03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:oih00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    OB3034
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:oih03400]
    OB3034
Enzymes [BR:oih01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     OB3034
DNA repair and recombination proteins [BR:oih03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     OB3034
SSDB
Motif
Pfam: LigD_Prim-Pol DNA_ligase_A_M Aminotran_3
Other DBs
NCBI-ProteinID: BAC14990
JAMSTEC: OB3034
UniProt: Q8EM27
LinkDB
Position
3143990..3145777
AA seq 595 aa
MKPIASTEIPVGDEWIYEVKYDGFRCKLIWSVANKITLISKNKHNITKKFPEIIQWCENN
YEFFKTALPLEFDGELVILNHRYQANFAQIQIRGRLQSTDRIEKKANLRPATLMVFDLTK
LKGKKLYQSNLSLRKKYLDQLMQDIRGDGRIRCVESFTSVSKINEIVYAAKSEGVVAKRK
KSIYQKGKQHQSWFKIKNWRLIHGILTAYNPSNGYFTVSVLENNQPVHIGKCKHGLEKDA
SQTVQKLFQEQGEFKDGIYYLPPAITSTIHTLDLYDEELREPEFKHITSSIAYSECTLDK
LQLDMAQLPHSIDISNTDKYLWPNNYTKQDLLVYIREISPWMLPFLRQKALTIIRCPDGI
TKESFFQKNLPDYAPDFLSSTSAQENYIVCNHLRSIVWLANHGSIEYHIPFQRIGHVTPL
EIVFDLDPPDREHFKLAVHAANLLKHILDELELVSFVKTSGNKGLQVYIPIREGSMTYDE
TFLFTEAIAKTLEKSYPNDFTTERMKKNRHNRLYIDYVQHGKDKTLIAPYSPRMTKEGTV
STPLYWNEVNNELDPTHFTIGNVINRVREIGCPFANYHDMHEQQPMKKMLRLVRG
NT seq 1788 nt   +upstreamnt  +downstreamnt
atgaagccgatagcaagtacagaaattcctgttggtgatgagtggatatacgaggtgaag
tatgatgggtttcgttgcaaattaatatggtctgtagcaaataaaataaccttgatcagt
aaaaataagcataatatcacaaagaaatttccggaaattattcagtggtgtgaaaataat
tatgaattcttcaaaactgcattaccactcgagttcgatggggaactagtaatattaaat
caccggtaccaggcgaattttgctcaaatacaaatccgtggaagattacaaagtacagac
cgaattgaaaaaaaagcaaatcttagacctgcaacattgatggtattcgatttaaccaaa
ctaaaaggaaaaaaattatatcaaagcaatctatctttacggaagaaataccttgatcaa
ctcatgcaagatatacggggagatggaagaattagatgtgtcgaatcattcacttcagtc
tcaaaaattaatgaaattgtatatgcagctaaatctgaaggtgtcgtagctaaaagaaaa
aaaagcatataccaaaagggaaaacaacatcaaagttggtttaagattaaaaactggcga
ttaatacatggaattctaacagcatataacccaagtaacggctatttcacagttagtgta
ctggaaaataatcagcctgttcatattggaaagtgtaaacacggactagaaaaagatgct
tctcaaaccgtacaaaagcttttccaagaacaaggcgagttcaaggatggtatttactat
ctacctccagcaattacgagtacaatccacacattagatttatatgatgaggagctacga
gaacctgaatttaagcatattacatcatcaatagcttattcagaatgcacattggataaa
ttacaattagatatggcacaacttccccattcaattgacatatctaatacagataaatac
ctttggccaaataattatactaaacaggatttattagtttacattcgtgaaatatcacct
tggatgttaccttttttacggcaaaaagcattgactattattcgctgtccagatggaatt
acgaaggaatccttttttcaaaaaaacttgccagactatgccccagactttttatcatcc
acttctgctcaagagaactatattgtatgtaatcatctgagaagtatcgtctggttagca
aatcatggttcgattgaataccatattccctttcaacggattggccatgttacaccttta
gaaattgtatttgatttggatccgcccgatcgcgagcattttaaattagctgtacatgct
gcaaatctcctaaagcatatattagatgaattagagcttgtatcgtttgtgaaaacatca
ggaaataaaggactacaagtatatataccaatccgagaaggaagcatgacttacgatgag
acattcctatttacagaagctatcgcaaaaacgctcgaaaaatcatatccaaacgatttc
acaaccgaacgaatgaaaaagaatcgacataatcgactttatatcgattatgttcaacac
gggaaagataaaacattgattgcaccatattcaccaagaatgacgaaagaaggtactgta
tcaacaccactatattggaatgaagtaaataacgagttagatcctactcattttacaatt
ggtaatgttatcaatcgggtgcgtgagatcggctgcccttttgcaaactatcatgatatg
catgaacagcaacctatgaaaaagatgctccgcttagtccgtggataa

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