Oceanobacillus iheyensis: OB3034
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Entry
OB3034 CDS
T00093
Name
(GenBank) hypothetical conserved protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
oih
Oceanobacillus iheyensis
Pathway
oih03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
oih00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
OB3034
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
oih03400
]
OB3034
Enzymes [BR:
oih01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
OB3034
DNA repair and recombination proteins [BR:
oih03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
OB3034
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
Aminotran_3
Motif
Other DBs
NCBI-ProteinID:
BAC14990
JAMSTEC:
OB3034
UniProt:
Q8EM27
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All DBs
Position
3143990..3145777
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AA seq
595 aa
AA seq
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MKPIASTEIPVGDEWIYEVKYDGFRCKLIWSVANKITLISKNKHNITKKFPEIIQWCENN
YEFFKTALPLEFDGELVILNHRYQANFAQIQIRGRLQSTDRIEKKANLRPATLMVFDLTK
LKGKKLYQSNLSLRKKYLDQLMQDIRGDGRIRCVESFTSVSKINEIVYAAKSEGVVAKRK
KSIYQKGKQHQSWFKIKNWRLIHGILTAYNPSNGYFTVSVLENNQPVHIGKCKHGLEKDA
SQTVQKLFQEQGEFKDGIYYLPPAITSTIHTLDLYDEELREPEFKHITSSIAYSECTLDK
LQLDMAQLPHSIDISNTDKYLWPNNYTKQDLLVYIREISPWMLPFLRQKALTIIRCPDGI
TKESFFQKNLPDYAPDFLSSTSAQENYIVCNHLRSIVWLANHGSIEYHIPFQRIGHVTPL
EIVFDLDPPDREHFKLAVHAANLLKHILDELELVSFVKTSGNKGLQVYIPIREGSMTYDE
TFLFTEAIAKTLEKSYPNDFTTERMKKNRHNRLYIDYVQHGKDKTLIAPYSPRMTKEGTV
STPLYWNEVNNELDPTHFTIGNVINRVREIGCPFANYHDMHEQQPMKKMLRLVRG
NT seq
1788 nt
NT seq
+upstream
nt +downstream
nt
atgaagccgatagcaagtacagaaattcctgttggtgatgagtggatatacgaggtgaag
tatgatgggtttcgttgcaaattaatatggtctgtagcaaataaaataaccttgatcagt
aaaaataagcataatatcacaaagaaatttccggaaattattcagtggtgtgaaaataat
tatgaattcttcaaaactgcattaccactcgagttcgatggggaactagtaatattaaat
caccggtaccaggcgaattttgctcaaatacaaatccgtggaagattacaaagtacagac
cgaattgaaaaaaaagcaaatcttagacctgcaacattgatggtattcgatttaaccaaa
ctaaaaggaaaaaaattatatcaaagcaatctatctttacggaagaaataccttgatcaa
ctcatgcaagatatacggggagatggaagaattagatgtgtcgaatcattcacttcagtc
tcaaaaattaatgaaattgtatatgcagctaaatctgaaggtgtcgtagctaaaagaaaa
aaaagcatataccaaaagggaaaacaacatcaaagttggtttaagattaaaaactggcga
ttaatacatggaattctaacagcatataacccaagtaacggctatttcacagttagtgta
ctggaaaataatcagcctgttcatattggaaagtgtaaacacggactagaaaaagatgct
tctcaaaccgtacaaaagcttttccaagaacaaggcgagttcaaggatggtatttactat
ctacctccagcaattacgagtacaatccacacattagatttatatgatgaggagctacga
gaacctgaatttaagcatattacatcatcaatagcttattcagaatgcacattggataaa
ttacaattagatatggcacaacttccccattcaattgacatatctaatacagataaatac
ctttggccaaataattatactaaacaggatttattagtttacattcgtgaaatatcacct
tggatgttaccttttttacggcaaaaagcattgactattattcgctgtccagatggaatt
acgaaggaatccttttttcaaaaaaacttgccagactatgccccagactttttatcatcc
acttctgctcaagagaactatattgtatgtaatcatctgagaagtatcgtctggttagca
aatcatggttcgattgaataccatattccctttcaacggattggccatgttacaccttta
gaaattgtatttgatttggatccgcccgatcgcgagcattttaaattagctgtacatgct
gcaaatctcctaaagcatatattagatgaattagagcttgtatcgtttgtgaaaacatca
ggaaataaaggactacaagtatatataccaatccgagaaggaagcatgacttacgatgag
acattcctatttacagaagctatcgcaaaaacgctcgaaaaatcatatccaaacgatttc
acaaccgaacgaatgaaaaagaatcgacataatcgactttatatcgattatgttcaacac
gggaaagataaaacattgattgcaccatattcaccaagaatgacgaaagaaggtactgta
tcaacaccactatattggaatgaagtaaataacgagttagatcctactcattttacaatt
ggtaatgttatcaatcgggtgcgtgagatcggctgcccttttgcaaactatcatgatatg
catgaacagcaacctatgaaaaagatgctccgcttagtccgtggataa
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