Oncorhynchus keta (chum salmon): 118365867
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Entry
118365867 CDS
T09424
Symbol
ift140
Name
(RefSeq) intraflagellar transport protein 140 homolog
KO
K19672
intraflagellar transport protein 140
Organism
oke
Oncorhynchus keta (chum salmon)
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
oke03037
]
118365867 (ift140)
Cilium and associated proteins [BR:
oke03037
]
Primary cilia and associated proteins
Intraflagellar transport (IFT) complex A
118365867 (ift140)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_IF140-IFT172
Beta-prop_IFT140_1st
Beta-prop_IFT140_2nd
TPR_IF140_C
Beta-prop_WDR19_1st
WD40_CDC20-Fz
Beta-prop_EML_2
ANAPC4_WD40
WD40_WDHD1_1st
Beta-prop_HPS5
TPR_GEMI5
TPR_IFT80_172
TPR_COPA_B
Beta-prop_WDR90_POC16_2nd
WD40_Prp19
WDR55
Beta-prop_CAF1B_HIR1
Clathrin
Beta-prop_WDR75_1st
RPN7
tRNA_int_end_N2
Consortin_N
Rax2
TPR_2
Motif
Other DBs
NCBI-GeneID:
118365867
NCBI-ProteinID:
XP_035604066
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All DBs
Position
3:complement(10182174..10239911)
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AA seq
1460 aa
AA seq
DB search
MAVYFDHRIEAPESSGGPSQVAWHPTQPVLAVASNSPTTGGNIDLYLQQGEHVGSCHVDR
PFQPTVLCWHPTKPLLALGWETGEVLLLIHPSGEQTPLPTTHTACITLLEWSSSGSRLIT
GDQMGVLALWKVDARGRLQGSHIVKHDYTKPLTYCIFRPAPPGEDVAMLARAAVGGDESA
LDMFNWRKAGNGPPLKMGPQEGLVFYVGTADGKVHCVDEHGRSSPVLSVDGSIQKLFYLK
RREVLAVVTETLLLSQYTLGPEGGAQELMKVKLSGKGGQSADIVSTETGLLITATGEQVI
RLWDLERDDNYVLSLDESLGFEKGEVLNCVSYCTAKEILAAGTNMGRIALWRMVSQPNTR
TDTKAQWKLQTPTEIEGNVTQLQWGSNLNLLAANSVTTVLILCEHVMSAHFGQQVAAVQL
TPSQLSLTMFNTNSHLTLRSDMHIKGVCVTKDTVTVWNGKQVTVYEPSGATLRNTGSFLC
ESQVLAVHDENIYTVEPNRVQVRTPQGTVKQLLAFSEAEGNPVLLSVCQGYLVVGTDTAH
IKVFDLTRREAKAHCSAKNLVDLTPNLGALKSVKCNANGNQVSILVTQVNGRPDHRMYFY
DVEMDTLSHFDFFTGRPPSGISQADDTERRPLTELSERCPVSHFWDENEPRLFVCETVLV
SSPQMDHLDRVDVLVVTFFCTQEHGLLLQDSYPKPAGLQALLALDVPYYYFTCKPGERDP
ETEEAQAPDPTQSPSLAQASAPAAQSPHMVSRRALRDFQGLENCEKATRDAMLNFSFYLT
IGNMDEAFKSIKLIKSEAVWENMARMCVKNRRLDVARVCLGNMGNARAARALREAEAEPE
LEARVAVLALQLGMLEDAEKLYKSCGRFDLLNKFYQASGQWQKAVETAETHDRIHLRTTY
YSYAKYLEAIGDKSMALVFFEKSDTHRFEVPRMLLDDALSLEIYVNKMKDKNIYKWWAQY
LESQSDMESALRYYEYAQDFLSLVRVHCYLGNIQKASEIANETGNRAASYHLARQYESQE
EIKQSVHFYTRAQAYNNAIRLCKENGLDDQLMNLALLSNPEDMMEAACYYEEKGSHMDRA
VMLYHKAGHFSKALEVAFATEQFAALQLIAEDLDETSDPALLARCSDFFIKHGQYEKAVE
LLVAAKKYHEALQLCLDQSLTITEDLAESMTVTKESKDLSEEARKELLERIADCCMRQGN
YHLATKKYTQAGNKLKAMRALLKSGDTEKIVFFAGVSRQKEIYIMAANYLQSLDWRKDPE
IMKNIISFYSKGRALDLLAGFYEACAQVEIDDYQNYEKALGALTEAYKCLSKAKGHSPDE
HEARMAELQHKITLVKRFVQARRLYEEDPGEAVHLCEALLEEPDLDPAVRIGDAYGFLVE
HHCQRGSFQVAYRKLEDLQKLLPSLNISYYVSQGSLDALQRAVGVPLGRRQLSGRGDRRD
SGGEEDEVEEDEALVSHQGD
NT seq
4383 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgtactttgatcaccgtatcgaggcccctgagtcaagcgggggcccctctcag
gtggcatggcatcccactcagcctgtactagcagtggcctccaacagccccaccaccggg
ggcaacatcgacctttacctccaacagggagagcacgtagggagctgccatgtggaccgt
cccttccagcccacggtgctgtgttggcaccccaccaagcctttgctggctctgggctgg
gagacaggcgaggtgctgctgctcatacacccctctggagagcagacgccgctgcccacc
acacatactgcctgcatcaccctgctggagtggagcagctccggcagccgcctgatcacc
ggggatcagatgggagttctcgcgttatggaaggtggacgcccgaggaagactacaggga
agtcacatagtgaagcacgactacaccaagcccttaacctactgtatcttcagaccagca
cccccgggagaggatgtggcgatgctggcgcgggcggcagtgggcggggacgagagtgcc
ctggacatgttcaactggaggaaggctgggaatggaccgccgctcaagatgggtcctcag
gagggtctggtgttctacgtcggcacggcagacggcaaggtgcactgtgtggatgagcat
ggcaggagcagcccagtgctcagtgtggacggctccatccagaagctcttctatctgaag
aggagagaagtcctggccgttgtcacggaaacccttttgctgtcacagtacacgctggga
cctgaggggggagcccaggagctcatgaaggtgaagctgagtggaaaaggtggccaaagc
gcagacatcgtttcaacagagacaggcctcctcatcacagctacaggggaacaggtcatc
aggctctgggacttggagagggatgacaactatgtgctttctctggatgagagccttggc
tttgagaaaggagaggtgttgaactgtgtctcctactgcacagccaaagagatcctagct
gcaggcaccaacatggggcgtatagctctgtggaggatggtgagccagcccaacaccagg
acagacaccaaggcccagtggaaactacagacacccacggagatcgagggcaatgtcacc
cagcttcagtggggctccaacctgaacctgctggctgccaacagtgtgaccacagtactg
atcctctgtgagcacgtcatgtctgcccacttcggccagcaggtggcagcggtacagcta
accccatctcagctcagcctcacaatgttcaacaccaactcccacctcaccctgcgttcc
gacatgcacatcaagggcgtctgcgtcaccaaggacacagtcacagtgtggaacgggaag
caggtcactgtgtacgaaccctcgggggcaactctacgcaacacaggctctttcctgtgt
gagtcccaggtcttagctgtgcatgatgagaatatctacactgtggagcccaatagagtc
caggtccgcacaccacagggcacagtgaagcagctactagccttctctgaggccgagggc
aaccctgtgctgctcagtgtgtgtcagggctacctggtggtgggaacagacacagctcac
atcaaggtctttgacctcactcgcagagaagccaaggcccactgcagtgctaagaaccta
gtggacctgacccctaatctgggagccctgaaatcggtcaagtgtaacgccaacggcaac
caagtcagcatcctggtcactcaggtgaatgggagacctgaccacagaatgtacttctat
gacgtagagatggacacactctctcactttgacttcttcactggtagaccgcctagtggc
atctcacaggccgacgacacagaaagacggccactgacagagctgagcgagagatgtcct
gtgtctcatttctgggacgagaacgagcctcgtctgtttgtgtgtgagacggtactggtt
agctctccccaaatggaccatctggacagggtggatgtgctcgtggtgacgtttttctgc
actcaggaacatgggctcctcctgcaggactcctaccccaaaccagccggcctgcaggcc
ttactggccctggacgttccctactactacttcacctgtaagccaggtgagagggatcca
gagacggaggaggcccaagctccagaccccacccaatctccatccctggcccaggcctca
gccccagctgcccagtccccccacatggtgtccagacgagccctccgggactttcagggc
ctggagaactgtgaaaaggccacccgcgatgccatgctcaactttagcttctacctgacc
atcggaaacatggacgaggccttcaagtccatcaaactcatcaagagtgaggcagtatgg
gagaacatggcgaggatgtgtgtgaagaaccggcgtctggacgtggcacgggtgtgtctg
ggcaacatgggtaatgccagggcggcacgggcgctacgggaggccgaggccgagcctgaa
ctggaggccagggtagcagtactggcccttcaactgggcatgctggaggatgcagagaag
ctgtataagagctgcggccgcttcgacctcctgaacaagttctaccaggcatctggccag
tggcagaaggccgtggagacagcagagacccacgaccgtatccacctcaggaccacttac
tacagctatgccaaatacctggaggccatcggagacaagagcatggccctcgtgttcttt
gagaagtctgacacccaccggttcgaggtaccccggatgctcctagatgatgcactgtct
ctggagatctacgtcaacaaaatgaaggacaaaaatatctataagtggtgggctcagtat
ctggagagccagtcagacatggagtcagcactacgctactacgaatatgcacaggacttc
ctctctctggtccgcgtgcactgctacctggggaacattcagaaggcgtcggagatagcc
aatgagacggggaaccgtgctgcctcgtaccacctagcccggcaatatgagagtcaggag
gagatcaaacagtctgtccacttctacacacgagctcaggcctacaacaacgccatccgc
ctctgcaaggagaatggtctggatgaccagctgatgaacctggctctcctcagtaaccca
gaggacatgatggaggctgcctgttattacgaggagaagggttctcatatggaccgtgct
gtcatgctctaccacaaggctggtcatttctccaaggctctggaggtggcctttgctaca
gaacagttcgctgcactgcaactcatagcagaggacctggatgagacatctgacccggcc
ctgctggcccgctgctctgacttcttcatcaaacacggccagtatgagaaggctgtggag
ctgcttgtggccgccaagaagtaccacgaggccctgcagctgtgtctggaccagagcctg
accatcaccgaggacctggctgagagtatgaccgtgaccaaggagtccaaagacctctca
gaggaggcccgcaaagagctgctggagagaatagctgactgctgcatgcgccagggcaac
taccacctagccaccaagaaatacacacaggctggcaacaagctaaaagccatgcgggcg
ctcctgaaatcaggggacacagagaagatagtgttcttcgctggcgtgtcacgtcagaag
gagatctacatcatggccgccaactacttgcagtctctggactggcggaaagatccggaa
atcatgaagaacattattagcttctactccaaaggcagggctctggacctgctagctggc
ttctatgaagcttgtgcccaggtggagatagatgattaccagaactatgagaaggcactg
ggtgctctgacggaggcctataagtgcctttctaaagctaagggccacagcccagacgaa
cacgaggctcgcatggctgagctgcagcacaagatcactctggtcaagaggtttgtccag
gcacgcaggttgtatgaggaggacccaggggaggcggtgcatctgtgcgaagccctgcta
gaagagccagacctggaccctgctgtcaggataggagatgcatacggcttcctggtggag
catcactgtcagcggggcagcttccaggtggcctaccgcaagctggaggatctgcagaag
ctgctgccctctctgaacatcagctactacgtgagccagggcagcctggatgccctgcag
agggcagtgggtgtacccctgggccggaggcagctctcaggcaggggagaccgacgcgac
agcgggggagaggaagacgaggtggaagaggacgaagccctggtgtcccaccaaggggac
tga
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