Oncorhynchus keta (chum salmon): 118373835
Help
Entry
118373835 CDS
T09424
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG9 isoform X1
KO
K18735
protein SMG9
Organism
oke
Oncorhynchus keta (chum salmon)
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oke03019
]
118373835
Messenger RNA biogenesis [BR:
oke03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
118373835
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg8_Smg9
AAA_16
ABC_tran
DUF6079_1st
URGCP_GTPase
AAA_30
MMR_HSR1
AAA_18
Motif
Other DBs
NCBI-GeneID:
118373835
NCBI-ProteinID:
XP_035615992
LinkDB
All DBs
Position
31:complement(22178632..22186542)
Genome browser
AA seq
536 aa
AA seq
DB search
MRRWPGKTSGVHSIIAISPAKTMLTTVCNMSESGHSQPGMYGQGRRRRRRRDRDVGPPGQ
NLSGPSRDREYVPRERRDGSEEPPGPLLQKTPIILAKPPGERSKPSQSVPTSGGQALEKP
IMLIKSREDGGKPGTPPEVASPASGSGASKLEREGQRPTQPVYQIQNRGMGAAASSGAVD
PVIGQTKLVPPEKMKHSIKLVDDQMNWCDSAMEYLRDQTDMLVVGVIGLQGTGKSTIMSL
LSANAPEEDQRGYVFRAQTQEIKERGGNQSTGIDFYITQERVIFLDTQPILSPSILDHLI
NNDRKLPPEYNLPHTYVEMQSLQITAFLFTVCHVVIVIQDWFTDINLYRFLQTAEMLKPS
TPSASHDSTGSSGNEEGSEYYPHIVFLQNKSSRDEFCPRNLKKMHMAVDKLMAHSHLKYK
GILSMLDCNIFPGLDRDYLETEVNMFLLPLMENEGEDALTKAGSGSAPLFSLLPGYRGHP
TFSSQVSKLRNQILAMSRCQLSHTILTEKNWFHYAARIWDGVKKSSALSEYSRLQA
NT seq
1611 nt
NT seq
+upstream
nt +downstream
nt
atgcgtcgttggcctggaaagactagtggcgttcattcaatcattgcaatttccccggct
aaaactatgttgaccacagtgtgcaacatgtcagaatctggccacagtcaacctggcatg
tacggacagggaaggaggagaaggcgacgccgagacagggatgtgggtcccccggggcaa
aacctctctggtcccagtcgagatcgggaatatgtccccagagaacgcagggatggcagt
gaggagccaccaggaccactccttcagaagacccccatcatcctggccaaaccccctgga
gaacggtccaagccttcccagagtgtacccaccagtggaggccaggccctggagaagccc
atcatgctcatcaagtccagggaggacggggggaaaccagggacccctcctgaggtggct
tctccggcctctggctctggggcctcaaagctagagagggagggccagcgccctacccaa
cctgtctaccagatccaaaacagaggcatgggagcagctgcttccagcggtgctgtcgac
cctgtgattggccagaccaagctcgtcccacctgagaagatgaagcacagcatcaagctg
gtggacgatcagatgaactggtgtgacagcgccatggagtacctaagggaccagacagac
atgttggtagtgggagtcattggcctgcagggaacagggaaatccaccatcatgtctctc
ctgtctgccaacgcacctgaagaagaccaaaggggctatgtgttcagggctcagactcag
gagatcaaagagagaggagggaaccagagcactggtattgacttctacattacccaggaa
agagtcatcttcttggacacacagcccattctcagcccctccattttggatcacctcatc
aacaacgaccgcaagctgcctccagagtacaacctccctcacacctatgtggagatgcaa
tctcttcagatcactgccttcctgttcacagtgtgccatgtggtcattgtgattcaagac
tggttcactgacatcaacctctacaggttcctccagacagcagagatgttgaagccctcc
accccctcagccagccatgacagcactggttcttctggcaacgaagaaggatcagagtac
taccctcacatagtgttcctgcagaacaagtctagtcgtgatgagttctgtcccagaaac
ctgaagaagatgcatatggcagtggacaagctaatggcccactcccatctgaaatacaaa
ggcattttgtccatgctggactgtaatattttccctggcctggaccgcgactacctggaa
acagaggtcaacatgttcctgctgcccctcatggagaatgagggggaggacgctctaacc
aaagcagggtctgggtccgcccctctcttctctctcctcccgggctacagaggacaccct
accttctcctctcaggtctccaagctccgcaaccaaatcctggccatgtcccgctgtcag
ctgtcacacaccatcctcacagagaagaactggtttcactatgcagctcgcatctgggac
ggggtgaagaagtcctcagccctgtctgaatacagccgtctacaggcctag
DBGET
integrated database retrieval system
