Oncorhynchus keta (chum salmon): 118374093
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Entry
118374093 CDS
T09424
Symbol
col9a1b
Name
(RefSeq) collagen, type IX, alpha 1b isoform X1
KO
K08131
collagen type IX alpha
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke04510
Focal adhesion
oke04512
ECM-receptor interaction
oke04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
118374093 (col9a1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
118374093 (col9a1b)
09142 Cell motility
04820 Cytoskeleton in muscle cells
118374093 (col9a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
oke00535
]
118374093 (col9a1b)
Proteoglycans [BR:
oke00535
]
Extracellular matrix (ECM) proteoglycans
Others
118374093 (col9a1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Laminin_G_2
Laminin_G_3
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
118374093
NCBI-ProteinID:
XP_052370249
LinkDB
All DBs
Position
Unknown
AA seq
776 aa
AA seq
DB search
MNGSTVTKNWNIWQMHDLNGEEQFAVRLNGESLSLEFTFTTLNKTRETAVFPFLPSLFNS
QWHNILLKVSKRSVTLFVDCVMVDSQNTPQRGIVNLDGYTLIGKLKDNPVLAVPVDEIEL
QRASGPVGPPGPAGVPGIDGVAGERGDDGEDGPAGPDGDAGKLGSAGLPGVPGDDGLTGP
TGDEGPDGPLGQKGEPGKPGPRGLAGVGDDGPPGPPGPGGLPGDLGKGGPPGAMGVRGPT
GPGGSVGPRGAAGMQDLSAELCPGACPPGTPGHPGLPGMKGHKGVKGEGGEPGKQGHKGE
EGDQGTTGDLGSQGPTGPQGIRGSTGMMGPKGGLGARGHDGDPGPQGVEGATGDQGQRGV
MGESGPKGDEGSQGGRGITGLPGPKGKGGLSGVDGREGIPGLPGGKGTIGKAGSPGEVGL
QGLPGLPGSPGSKGTGGEKGSSGEAGLLGTIGSAGKTGEQGKAGGLGPIGPIGGPGDSGV
QGPAGPPGKPGARGPKGDLGLPGVPGPPGLPGVKGERGEAGEGGPKGEQGGQGSEGTSGD
KGDVGDQGEAGPKGVVGNPGEPGNRGPEGSRGQPGIEGPAGTSGPRGMQGNRGAPGIRGS
QGPAGKEPSDQHIRQVCMRVMQEQLAQLAASLRRPESGAAGLPGKPGPPGPAGPPGDSGF
PGQAGARGLPGLKGPPGLLGLKGPKGELGDRGDRGPTVRGAKGQPGPPGLPGEPGKPGYG
QEGRDGERGPPGVPGQAGVPGPPGNAGPNGYCDPSSCNLRPGDIDTSIKGPEGTRN
NT seq
2331 nt
NT seq
+upstream
nt +downstream
nt
atgaacggcagtacggtaaccaagaactggaatatttggcaaatgcacgatttgaacggc
gaagagcagtttgcggttagactgaacggagaatcgctgtctcttgaattcaccttcaca
acattgaataaaacacgagagacggcagttttccctttcctaccgtccctcttcaactct
caatggcacaatatcttactgaaagtcagcaagcgttctgtaactctgttcgtggattgc
gttatggtggactctcagaacacaccccagagaggtatagtcaacctggatggatacacg
ttgattggaaagctgaaggataaccccgttttagcagtgccagtggacgaaatagaactt
cagagggcctcgggccccgtcggccctccaggacccgcaggtgtcccaggaattgatggt
gtcgctggtgagaggggagacgacggagaggatggccctgctggtcctgatggagatgca
ggtaaactaggctcagccgggttgccaggtgtgcccggggatgatggtttgactggtcct
actggagacgaaggtcccgatggtccccttggacagaaaggtgaacctgggaaaccagga
cctcgtggactagctggcgttggagacgatggaccccctggacccccggggccaggagga
cttccaggtgatttgggcaaaggtggaccccctggtgctatgggagtgagaggaccaaca
ggacctggtggatcagtagggccgagaggtgcagcagggatgcaggatttgagtgccgag
ctgtgccctggtgcctgtccacctgggacacctggtcatcccggcctccctggcatgaag
ggtcacaaaggagtaaaaggggaaggaggagagcctgggaaacaagggcacaagggtgaa
gagggtgaccagggaaccacaggggacctcggatcccagggcccaacgggtcctcaggga
atcagaggctccactggaatgatggggcccaaaggtggactgggagcacgaggacatgat
ggagatccaggtccccagggtgttgaaggagccactggtgaccaaggccagaggggtgtg
atgggcgagtctggtcctaaaggtgatgagggatctcaaggtggaagaggaatcacaggt
cttcctgggcccaagggaaagggtggtttgtcaggagtggatggccgtgaaggtattcct
ggattgccaggtggaaagggcaccattggcaaggctgggtctccaggggaggtggggctt
cagggacttcctggattacctggttctcctggctctaaaggaactggtggagagaagggt
agctctggagaggcaggtcttcttggaacaataggatctgctggtaaaacaggagagcaa
ggcaaagcaggaggtctaggacccattggacccattggtggaccgggagacagcggagta
caaggaccagccggtccaccaggcaaaccaggggccaggggacctaaaggagatcttggt
cttcctggtgttcccggacccccaggcctccccggagtgaagggagagaggggagaagct
ggagaaggaggacctaaaggagagcaggggggacaaggttctgagggaacttctggagac
aaaggagatgttggtgaccaaggggaagctggacccaaaggagtggttggaaacccagga
gagcctggtaacagagggccagagggtagcagagggcagcctggcatcgagggcccagct
ggtacttctggaccacgtggcatgcagggcaacaggggcgcaccaggaatcagggggtca
cagggaccggcgggtaaagaaccaagcgatcaacacatcagacaagtctgcatgagagtt
atgcaagagcagctagcccagttggctgccagtctaaggaggccggagtctggagcagcg
ggcctgcctggtaagccagggcctcctggtcctgccggacccccaggggacagtggcttc
cctgggcaggctggagcaagaggactgcctggcctcaaaggacctccaggactcctagga
ctcaaaggacccaaaggtgaattgggcgacagaggagaccgaggtcccacggtgcgaggg
gccaagggccagccaggacctcccggtctaccaggtgagcccggaaagcctggttacggc
caggagggacgtgacggcgagagaggacctccaggtgttcctggccaggctggtgtacct
gggcctcctggtaatgctggccccaacggctactgcgacccatcgtcctgcaacctcaga
ccgggggacattgacaccagcatcaagggcccggagggaactagaaactag
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