Oncorhynchus keta (chum salmon): 118395864
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Entry
118395864 CDS
T09424
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
118395864
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oke03019
]
118395864
Messenger RNA biogenesis [BR:
oke03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
118395864
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
118395864
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
118395864
NCBI-ProteinID:
XP_052322009
LinkDB
All DBs
Position
17:41859371..41889639
Genome browser
AA seq
2471 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQDIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECVSLISKPNFISTLCYTIDNPLHYQKSLKPSTHLFTQLSKVLK
LSKVQEVIFGLALLNSCNADLRGFAAQFVKQRLPDLLRSYVDADLGGNQEGGFQDIAIEV
LHLLLSHLLFGQKGASGVGQEQIDAFLRTLCRDFPQERCPVVLSPLLYPEKRDILMDRIL
PDSGELAKTMMESSLAEFMQEVGYGFCASLDECRNIILQYGVREVTASQVARVLGMMART
HSGLSDGIPLQSISAPGSGIWSDGKDKGDGSQAHTWNVEVLIDVVKEVNPNLNFKEVTYE
LDHPGFIIRDSKGLQMVVYGIQRGLGMEVFPVDLIYRPWKHAEGQLSFIQHSLMSPDVFC
FADYPCHTVAIDILKAPPEDDNREIATWKSLDLVESLLRLSEVGQYEQVKQLFSFPIKHC
PDMLVLALLQISTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
SMAEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGVSGEPFIQACVTFLKRRCPSIIGGLALEKDQPKSALLPPETMATMLGCLQS
CAGSVTQELSETILTMAANCSNVMNKARQPPPGVMPKGRAPSTSSLDAISPVQVSVSPLQ
MDPLTAMGSLNLGSSATSHTQSMQGFPTPLGSAFSNPQSPAKAFPPLSNPSTPFGGIGSL
SSQLGNPGPLGSGICSGIGSGLGMPAVSSDPFGTRKMSTPGLNPPTFQQSKMASDLSQVW
PEANQHFSKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLR
NLFEEYRFFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYF
GIAALDRFKNRLKDYPQYCQHLASIGHFLQFPHHLQECVQYIEYGQQSRDPPVKMQGSIT
TPGSLALAQVQALSQPPKAPQPGQPSTLVTTATTTTTVAKNTTITRPTPGFKKDVPPSIN
TTNIDTLLVATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVS
QYLVMKRVSIEPNFHSLYSNFLDTLKNPEFVKMALNETYRNIKVLLTSDKAAANFSDRSL
LKNLGHWLGMITLAKNKPILYTDLEVKSLLLEAYVKGQQELLYVVPFVAKVLESSLRSVI
FRPQNPWTMAIMNVLAELHTEHGLKLNLKFEIEVLCKNLSLDINDLKPGTLLKDKDKLKS
LEEQLSAPKKEAKPPEEMLPVVSTGIQHFQIGMPLVGDFLPFAAAPSTPAATTTCSATGP
PTPQFSYHDINVYALAGLAPHINININIPLLQAHPQLKQCVRQSIERAVQELVHPVVDRS
IKIAMTTCEQIVRKDFALDSEESRMRVAAHHMMRNLTAGMAMITCREPLLMSIATNLKNS
FAAALRAPTPQQREMMEEAAARVAQDNCELACCFIQKTAVEKAGPEMDKRLATEFELRKH
ARQEGRRYCDPVVLTYQAERMPEQIRLKVGGVDPKQLAVYEEFARNVPGFLPSNDLSQPT
GFLAQPMKQQAWATDDVAQIYDKCMADLEQHLHAIPPALAMNPQTQALRSLLEAVALARN
SRDGIAALGLLQKAVEGLLDATSGADADLLLRYRECHLLVLKALQDGRAYGPQWCNKQIT
RCLIECRDEYKYNVEAVELLIRNHLVNMQQYDLHLAQSMENGLHYMAVAFAMQLVKLLLV
DERSVSHITEADLFHTIETLMRTSAHSRANAPEGLPQLMDVVRSNYEAMIDRAHGGPNFM
MHSGISQASEYDDPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQHTAWTPTHT
PQDIPEVSSQSPSPEQTGRRTVLHRAMTTLISIPHQMHQQGILKTDDLITRFFRLCTEMC
VEISYRAQAEQQHNPAASAAIIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKV
LGIVVGVLIQDHDVRQTEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHIL
RPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELNK
PMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPF
TPNLKVDMLSEINIAPRILTNFTGVMPSQFKKDLDSYLKTRSPVTFLSELRSNLQVGGAT
LGPWKYLQHNDTSLDQVSNEPGNRYNIQLINALVLYVGTQAIAHIHNKGSTPSMSTITHS
AHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQIT
RVLLERLIVNRPHPWGLLITFIELIKNPAFKFWSHDFVHCAPEIEKLFQSVAQCCMGQKQ
AQQVMEGTGAS
NT seq
7416 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggctttgtctcaaatcagctacttggtggacaattta
actaagaaaaactacagagccagccagcaggatatacaacatattgtgaatcgtcacggc
cctgaggcagacaggcatttgttacgctgtcttttctcccatgtggatttcagtggcgat
ggtaaaagcagtggcaaagatttccatcagacacagtttctgatccaggagtgtgtttcg
ctgatttcaaagccaaattttatttcaacactctgctacacaatcgacaatcccttgcac
taccagaagagtttgaagccttccacccacttgtttactcagttgagtaaagttctcaag
ctaagcaaggttcaagaagttatatttggccttgctttgctgaattcgtgcaacgcagac
cttcgtggttttgccgcgcagttcgtcaaacaaaggctcccggacctcctccgctcgtac
gtggacgcggaccttggaggaaaccaggaaggtggcttccaagatattgccatagaggtc
ctgcacctgctcctctctcatcttctttttggacagaagggagccagcggggtcggacaa
gagcagattgacgcgttcctcaggaccctgtgcagagatttcccgcaggagcgctgccct
gtggtgctctcaccactgctataccctgaaaaacgggacattctgatggacaggattctg
ccagactcgggagagttagccaagaccatgatggagagttctctcgcagagttcatgcag
gaagttggctatggcttttgtgcaagtctcgatgaatgccgcaacataatcctacagtat
ggggtgcgagaggttactgccagccaggtggccagggtcctggggatgatggctcgcacc
cactctggcttgtctgatggaatccccctacagtccatctcggctccgggcagtggcatt
tggagcgatggaaaggacaaaggtgatggctctcaggcgcacacctggaatgtagaagtt
ctaattgatgtggtcaaagaagttaaccccaatctgaactttaaagaggtgacctatgag
cttgaccaccctggcttcataatccgggacagcaagggactgcagatggtggtgtatggg
atccagaggggcctgggcatggaggtgttccctgtcgacctaatctaccgtccctggaag
catgctgaaggacagctgtcattcatccagcactccctcatgagcccagatgtgttctgc
tttgctgactacccctgccacaccgtagcaattgacatactgaaggccccacctgaggat
gataaccgagagatagccacctggaagagcctagacctggtggaaagcctcctgcgcctc
tctgaggtgggccagtacgagcaggtaaagcagctcttcagcttccccatcaagcactgt
cctgacatgctggtgctggcgctgctgcagataagcacctcctggcacaccctgcgccac
gagctcatctccaccctcatgccaatcttcctgggcaaccaccccaactctgctatcatt
ttacactacgcctggcatggacagggccagtccccctctatccgtcagctgatcatgcac
tcaatggctgagtggtacatgagaggggagcagtacgaccaggccaagctctcccgcatc
ctggatgtggcccaggacttgaagtctctatctatgctgcttaatggtactccatttgcc
ttcgttatcgaccttgctgcacttgcctctcgccgtgaatacctcaaacttgacaaatgg
ctgactgacaaaatccgagagcatggggtgagtggtgagcccttcatccaggcgtgtgtt
acgttcctgaagagacgttgtccctctatcattggtggtctggccctagaaaaagaccag
cccaaaagcgccctccttcccccggaaacgatggctaccatgctgggttgtctgcagtcc
tgtgcagggagcgtcactcaagagctctccgagactatcttgaccatggctgccaactgt
agcaacgtcatgaacaaagcccgccagccaccaccaggggtcatgccaaagggacgtgct
cccagcaccagcagcctagatgcaatttcccctgtgcaagtgtcggtgtctcctctccag
atggatcccctgacagccatgggctccctcaacctgggcagctctgccacctctcacaca
cagagtatgcagggctttcccaccccgctgggctctgctttcagcaacccccagtcccca
gctaaggccttccctccactgtctaaccccagcacaccatttggggggattggaagtctc
tcttcacagctaggtaacccaggtccgctgggatcaggcatttgctctggtattggttct
ggtcttggaatgccagcggtgagcagtgatccgtttgggacaaggaagatgagcacacca
ggcctgaatccgcccacctttcagcagagtaagatggcctctgacctatctcaggtgtgg
ccagaggctaaccagcactttagtaaggagattgatgatgaggctaacagctacttccag
cgcatctacaaccaccccccacaccccaccatgtctgtggatgaggtgctggagatgctg
caaaggttcaaggactccaccatcaagcgagagcgtgaggtctttaactgtatgttgagg
aacttgtttgaggagtaccgcttcttcccccagtaccctgacaaggagctacacatcacc
gcctgcctgttcggggggatcattgagaaaggccttgtcacctacatggccctcggactg
gcccttcgatatgtactcgaagccttgaggaagccatttgggtccaaaatgtattacttt
ggaatcgctgctctagatagattcaaaaatagactgaaggactatccccaatattgtcag
cacttggcctcaatcggccacttcctgcaattcccccatcatttacaagagtgcgtgcag
tatattgagtatggccaacagtcacgggaccctccggtgaagatgcagggatccatcacc
accccaggaagcctggcgctggcgcaagttcaggccttgtctcagcctcccaaagccccc
cagcctggacagcccagcaccctggtcaccacagctaccaccaccaccactgtcgccaaa
aacactaccatcacccggcctacccctggcttcaagaaggatgtgccgccttccatcaac
accacaaacatcgacacacttctagtagcaacagaccaaaccgagaggattgtggaaccc
ccagaaaatgttcaagagaaaattgctttcatcttcaataacctgtcacaatccaacatg
acacagaaggttgaggagttaaaggagactgtcaaagaggagttcatgccctgggtctct
cagtatctggtcatgaagagggtcagcattgagcccaacttccacagcctgtactccaac
ttcttggacaccctgaagaacccagagtttgtcaaaatggccctgaatgaaacttacaga
aacatcaaggttctccttacctctgataaggcagctgcaaacttctctgatcgatcccta
ctgaagaatttgggtcactggcttggtatgatcactctggctaaaaacaagcccatcctg
tacacagatttggaggtgaaatccctgttgttggaagcgtatgtcaaggggcagcaggag
ctactctatgtggtcccgtttgtggccaaagtcctggaatccagtttacgtagcgtgatt
tttcgaccccagaatccctggacgatggccatcatgaatgttctggcagagctgcataca
gagcatggcctcaagctgaacttgaagtttgagattgaggtgctgtgtaagaacttatca
ttggacatcaatgacctgaagcctggcacccttctgaaggacaaagacaagttgaagagc
ctggaggaacagctctctgcaccaaagaaagaggccaagccccctgaagaaatgctccct
gttgttagcacaggtatccagcactttcaaattgggatgccccttgtcggagactttctt
ccatttgcagctgcgccatccactcctgccgcaaccaccacttgctcagctactggtccc
cctaccccacagtttagctatcatgacatcaatgtgtacgcccttgcagggctagcccct
cacatcaatatcaacatcaatatccccttgctccaagcccaccctcagcttaagcagtgt
gtgagacagtccattgagcgggccgtgcaggagctcgtccaccctgtggtggaccgttcc
atcaagatcgccatgactacctgcgagcagattgtcaggaaggactttgccctggactcc
gaggagtcgcgcatgcgtgtggctgcccatcacatgatgcgtaacctgaccgccggcatg
gccatgatcacctgccgggagcccctgctcatgagtatcgctaccaacctgaagaacagc
tttgccgcagccctcagagcccccaccccccagcagagagagatgatggaggaggctgct
gctagggttgcccaggacaactgtgagctggcctgctgcttcattcagaagactgcagtg
gagaaggctggcccagagatggacaagagactggccacggagtttgagctgaggaagcac
gcccgtcaggagggtcgtcgctactgcgaccctgtggtgctgacctaccaggcagagcgc
atgccagagcagatcagactcaaggttggaggagtagaccccaaacagctggcggtgtac
gaggagtttgccaggaatgttccaggcttcctacccagcaacgacctgtctcagcccact
ggattccttgcccagcccatgaagcaacaggcatgggccacagacgatgtggctcagatt
tatgacaagtgcatggcggacctggagcagcacctccatgccatccccccagcgctggcc
atgaacccccagactcaagccctgcgcagtctgctggaggcagtggccctggccaggaac
tcccgggatggcattgctgctctgggcctgctgcagaaggctgtggagggtctgctcgat
gccaccagtggtgccgatgctgacctgctcctgcggtacagagagtgtcacctgctggtg
ctcaaagccctccaggacggacgggcatacggaccacaatggtgcaacaaacagattacc
aggtgcctgattgagtgccgtgatgagtacaagtacaatgtggaggctgtggagctgttg
atcagaaaccacctggtcaacatgcagcagtacgacctgcacctggcacagtctatggag
aacggtctgcactacatggcagtggcatttgccatgcagctggtaaagctgctgctggtg
gatgagcgcagtgtgagccacatcacagaggccgacctgttccacaccatcgagactctg
atgagaaccagcgcacactctagggccaatgcacccgaggggcttcctcagctgatggat
gtggtccgctctaactacgaggccatgatcgaccgggcccatggaggacccaactttatg
atgcactctggcatctcccaagcgtctgagtacgacgacccgccgggcctgagggagaag
gcggagtacttgctgagggaatgggtcaacctgtaccactctgcagccgctggccgggac
agcaccaaggccttttctgcttttgtgggccagcacacagcttggacaccaacgcatacc
ccacaagacattccagaggtttcttcacaatccccaagtccagaacagactgggaggcgc
acagtactacatagagccatgactacattgatctctattccacatcagatgcaccagcag
ggcattctgaagaccgatgacctgatcacacgtttcttccggctgtgcacagagatgtgt
gttgagatcagctaccgcgcccaggccgagcagcagcacaatcctgcggccagtgccgcc
atcatcagagccaagtgctaccacaacctggacgcctttgttcgcctcatcgctctgctg
gtcaagcactctggagaggccaccaacacagtcaccaagatcaacctgctcaacaaggtt
ctaggtattgtggttggagtgctgatccaggaccatgatgtaagacagacagagtttcag
cagttgccttaccaccgcatcttcatcatgctgctgcttgagctcaatgcccccgagcat
gtgctggagaccatcaacttccagaccctcaccgccttctgcaacactttccacatcctg
aggcctaccaaagcccctggctttgtctacgcttggctggagttgatctctcaccggatc
ttcatcgccaggatgctggcacacaccccacagcagaagggttggcccatgtatgcccag
ctactcattgatcttttcaaatacctagcgcccttcctgcggaatgttgagctcaacaaa
cctatgcaaatcctctataagggtaccctgcgtgtcctgcttgtcttgctgcatgacttc
ccagagttcctgtgtgactaccactatggcttctgtgatgtcatcccgcccaactgcatc
cagctccgcaacctgatcctgagtgccttcccacgcaatatgagacttccagaccccttc
actcccaatctgaaggttgacatgctcagcgagatcaacattgctccacgcatcctcact
aacttcaccggagtgatgccctctcagttcaagaaggatctggactcgtacctgaagacg
cgctcccctgtcaccttcctctctgagctccgcagcaatctgcaggtagggggcgccact
ctgggtccctggaagtatttgcagcacaacgacacatctttagaccaggtgtcaaatgag
ccaggcaatcgttacaacatccagctgatcaatgcactggtgctgtatgtggggacccag
gccatcgcacacatccacaacaagggcagcactccctccatgagcaccatcactcactca
gcccacatggacatcttccagaacctggctgtggacctggacactgaggggcgctatctc
ttcctgaatgcgattgctaatcagctgcgctacccaaacagccacacccattacttcagc
tgcaccatgctctacctgtttgctgaggccaacacggaggcaatccaggagcagatcacc
agggttcttctggagaggctgattgtgaacaggcctcacccctggggactgctcatcacg
ttcatcgagctcatcaagaaccctgccttcaagttctggagccacgactttgtgcactgt
gccccggagatcgaaaagttgttccagtcagtggctcagtgctgcatggggcaaaagcag
gctcagcaggtgatggagggcactggtgccagttag
DBGET
integrated database retrieval system
