Oncorhynchus keta (chum salmon): 118401036
Help
Entry
118401036 CDS
T09424
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
118401036
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oke03019
]
118401036
Messenger RNA biogenesis [BR:
oke03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
118401036
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
118401036
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
118401036
NCBI-ProteinID:
XP_035654080
LinkDB
All DBs
Position
22:complement(10706270..10724279)
Genome browser
AA seq
2424 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQFLIQECVSLISKPNFISTLCYAIDNPLHYQKSLKPSAHLFTQLSKVLKLS
KVQEVIFGLALLNSCNADLRGFAAQFVKQKLPDLLRSYVDADLGVNQEGGFQDIAIEVLH
LLLSHLLFGQKGASGVGQEQIDAFLKTLCRDFPQARCPVVLAPLLYPEKRDILMDRILPD
SGELAKTMMESSLAEFMQEVGYGFCASLDECRNIILQYGVREVTASQVARVLGMMARTHS
GLSDGIPLQSISAPGSGIWSDGKDKSDGSQAHTWNVEVLIDVVKEVNPNLNFKEVTYELD
HPGFMIRDSKGLQMVVYGIQRGLGMEVFPVDLIYRPWKHAEGQLSFIQHSLMSPDVFCFA
DYPCHTVAIDILKAPPEDDNREIATWKSLDLVESLLRLSEVGQYEQVKQLFSFPIKHCPD
MLVLALLQISTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMHSM
AEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNGTPFAFVIDLAALASRREYLKLDKWLT
DKIREHGVGGEPFIQACVTFLKRRCPSIMGGLAPEKDQPKSAQLPPETMATMLGCLQSCA
GSVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRAPSTSSLDAISPVQVSVSPLQMD
PLTAMGSLNLSSSATSHTQSMQGFPTPLGSAFSNPQSPAKAFPPLSNPNPSTPFGGIGSL
SSQLGNTGPLGSGIGSGLGMPAVSSDPFGTRKMSTPGLNPTTFQQSKMKASDLSQVWPEA
NQHFSKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLF
EEYRFFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIA
ALDRFKNRLKDYPQYCQHLASIGHFLQFPLHLQECVQYIEYGQQSRDPPVKMQGSITTPG
SLALAQAQAQSQPPKAPQPGQPSTLVTTATATTTVAKTTTITRPTPGSFKKDVPPSINTT
NIDTLLVATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQY
LVMKRVSIEPNFHSLYSNFLDTLKNPEFVKMVLNETYRNIKVLLTSDKAAANFSDRSLLK
NLGHWLGMITLAKNKPILYTDLEVKSLLLEAYVKGQQELLYVVPFVAKVLESSLRSVIFR
PQNPWTMAIMNVLAELHTEHDLKLNLKFEIEVLCKNLSLDINDLKPGTLLKDKDKLKTLE
EQLSAPKKEAKPPEEMIPIVSTGIQHFQTGMPLVGDFLPFAAAPSTPAPTTTCSATGPPT
PQFSYHDINVYALAGLAPHINININIPLLQAHPQLKQCVRQSIERAVQELVHPVVDRSIK
IAMTTCEQIVRKDFALDSEESRMRVAAHHMMRNLTAGMAMITCREPLLMSIATNLKNSFA
AALRAPTPQQREMMEEAAARVAQDNCELACCFIQKTAVEKAGPEMDKRLATEFELRKHAR
QEGRRYCDPVVLTYQAERMPEQIRLKVGGVDPKQLAVYEEFARNVPGFLPSNDLSQPTGF
LAQPMKQQAWATDDVAQIYDKCMADLEQHLHAIPPALSMNPQTQALRSLLEAVALARNSR
DGIAALGLLQKAVEGLLDATSGADADLLLRYRECHLLVLKALQDGRAYGPLWCNKQITRC
LIECRDEYKYNVEAVELLIRNHLVNMQQYDLHLAQSMENGLHYMAVAFAMQLVKLLLVDE
RSVSHITEADLFHTIETLMRTSAHSRANAPEGLPQLMDVVRSNYEAMIDRAHGGPNFMMH
SGISQASEYDDPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDD
LITRFFRLCTEMCVEISYRAQAEQQHNPAASAAIIRAKCYHNLDAFVRLIALLVKHSGEA
TNTVTKINLLNKVLGIVVGVLIQDHDVRQTEFQQLPYHRIFIMLLLELNAPEHVLETINF
QTLTAFCNTFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFK
YLAPFLRNVELNKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLIL
SAFPRNMRLPDPFTPNLKVDMLSEINIAPRILTNFTGVMPSQFKKDLDSYLKTRSPVTFL
SELRSNLQVGGATLGPWKYLQHNDTSLEQVSNEPGNRYNIQLINALVLYVGTQAIAHIHN
KGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLF
AEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWSHDFVHCAPEIEKL
FQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7275 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggctttgtctcaaatcagctacctggtggacaattta
acaaagaaaaactacagagccagccagcaggaaatacagcatattgtgaatcgtcacggc
cctgaggcggacaggcatttattacgctgtctcttctcccatgtggatttcagtggtgat
ggtaaaagcagtggcaaagattttcatcagtttctgatccaggagtgtgtttcactgatt
tcaaagcctaattttatttcaacactttgctacgccatcgacaatcctttgcactaccag
aagagtttgaagccgtcggcccacttgttcactcagttgagtaaagttctcaagctaagc
aaggttcaagaagtgatatttggccttgctttgctcaattcgtgcaacgcagaccttcgt
ggttttgccgcgcagttcgtcaaacaaaagctccctgatctcctccgctcgtacgtggac
gctgaccttggcgttaaccaggaaggtggcttccaagatattgccatagaggtactgcac
ctgctcctctcccatcttctgtttggccagaagggagccagtggcgtcggacaagagcag
attgacgctttcctcaagacactgtgcagagatttcccgcaggcgcgctgccctgtggtg
cttgcaccgctgctgtaccctgaaaaacgggacattctgatggacaggattctgccagac
tcgggagagttagccaagaccatgatggagagttctcttgcagagttcatgcaggaagtt
ggctatggcttttgtgcaagccttgatgaatgccgcaacataattctacagtatggggta
cgagaggttactgccagccaggtggccagggtcctggggatgatggctcgtacccactct
ggcttgtctgatggaatccccctacagtccatctctgctcccggcagtggcatttggagt
gatggaaaggacaaaagtgatggttctcaggcccacacttggaatgtagaagttctgatt
gacgtggtcaaagaagttaaccccaatctgaacttcaaagaggtgacctacgagctcgat
caccctggctttatgatccgggacagtaagggtcttcagatggtggtgtatgggatccag
aggggcctgggtatggaagtgttccctgtcgacctcatctaccggccctggaagcatgct
gagggacagctgtcattcattcagcactccctcatgagcccagatgtgttctgcttcgct
gactacccctgccacaccgtagccatcgacatactgaaggcgccacccgaggacgataac
agggagatagccacctggaagagcctggacctggtggagagcctcctgcgcctctctgag
gtgggccagtacgagcaggtgaagcagctcttcagtttccccatcaaacactgtcctgac
atgctggtgctggcgctgctgcagatcagcacctcctggcacaccctgcgccacgagctc
atctccaccctcatgcccatcttcctgggcaaccaccccaactccgccatcatcttgcac
tacgcgtggcacggacagggccagtccccctctatccgccagctgatcatgcactcgatg
gcagagtggtacatgagaggagagcagtacgaccaggccaagctgtcccgcatcctggat
gtggcccaggacttgaagtctctttcaatgctgctaaatggtactccatttgcctttgtt
attgaccttgctgcacttgcctctcgccgtgaatacctcaaacttgacaaatggctgact
gacaaaatccgagagcacggggtgggtggcgagcccttcatccaggcatgtgtaacgttc
ctgaagaggcgctgtccctctattatgggtggtctggccccagagaaggaccagcccaaa
agcgcccagctccccccggaaacgatggctaccatgctgggctgtctgcagtcctgtgcc
gggagtgtgtctcaagagctctctgagactatcttgaccatggttgccaactgtagcaac
gtcatgaacaaagcccgccagccaccaccgggggtcatgccaaagggacgtgctcccagc
accagcagcctagacgccatttcccctgtgcaggtatcggtgtctcctctccagatggat
cccctgacagccatgggttcactgaacctgagcagctctgccacctctcacacacagagc
atgcagggcttccctaccccgctgggctctgccttcagcaacccccagtccccagctaag
gccttccctccactgtccaaccccaaccccagcacaccgtttggggggattggaagcctc
tcttcacagctaggtaacacaggtccgctgggatcaggcattggttctggtcttggaatg
ccagcggtgagcagcgatccgtttgggacgaggaagatgagcacaccgggcctgaatccg
accacctttcagcagagtaagatgaaggcctctgacttatctcaggtgtggcccgaggct
aaccagcactttagtaaggagattgacgatgaggctaacagttacttccagcgcatctac
aaccaccctccgcaccccaccatgtctgtggatgaggtgctggagatgttgcagaggttc
aaggactccaccatcaagcgagagcgggaggtctttaactgtatgctgaggaacttgttt
gaggagtaccgcttcttcccccagtaccccgacaaggagctgcacatcaccgcctgcctg
ttcggggggatcatcgagaagggtcttgtcacctacatggcccttggactggccctcaga
tatgtccttgaagccttaaggaagccatttggatccaaaatgtattactttggaatcgct
gctctagatagattcaaaaataggctgaaggactatccccaatattgtcagcacttggcc
tcgatcggccactttctgcaattcccccttcatttgcaagagtgcgtgcagtatatcgag
tatggccaacagtcacgggatcctccagtgaagatgcaaggatccatcaccacccctgga
agcctggcgttggctcaagctcaggcccagtctcagcctcccaaagccccccagcctgga
cagcccagcaccctggtcaccacagctaccgccaccaccactgtcgccaaaaccactacc
atcacccgacctacccctggcagcttcaagaaggatgtgccgccttccatcaacaccaca
aacattgacactctgctagtagcaacagaccaaactgagaggattgtggaacccccagag
aatgttcaagagaaaattgctttcatcttcaataacctgtcacaatccaacatgacacag
aaggtcgaggagttaaaggaaactgtgaaagaggagtttatgccctgggtttcccagtat
cttgtcatgaaaagggtcagcatcgagcccaacttccacagcctatattccaactttcta
gacaccctgaagaaccccgagtttgtcaaaatggtcctgaatgaaacttacagaaacatc
aaggttctccttacctctgataaggcagctgcaaacttctctgatcgatccctactgaag
aacttgggccactggcttggcatgatcactctggctaaaaacaagcccatcctgtacacg
gatttggaggtgaaatccctcttgttggaagcctatgtcaaggggcagcaggagctactc
tatgtggtcccgtttgtggccaaagtcctggaatccagtttgcgtagtgtgatcttccga
cctcagaatccctggaccatggccatcatgaatgttctggcagagttgcatacggaacat
gatctaaagctgaacttaaagtttgagattgaggtgctgtgtaagaacttatcactggac
atcaacgacctgaagcctggcaccctgctgaaagacaaagacaagttgaagactctggag
gagcagctctctgcaccaaagaaagaggccaagccccctgaagaaatgatccctattgtt
agcacaggtatccagcactttcaaactgggatgccccttgtcggagactttcttccattt
gcagctgcaccatccactcccgccccaaccaccacttgctcagctactgggccccctacc
ccgcagtttagctatcatgacatcaatgtgtacgcccttgcagggctagcccctcacatc
aatatcaacatcaacatccccttgcttcaagcccaccctcagctcaagcagtgtgtgaga
cagtccattgagcgggctgtgcaagagcttgtccaccccgtagtggaccgctccatcaag
attgccatgaccacctgcgagcagatcgtcaggaaggactttgctctggactcggaggag
tcgcgcatgcgtgtggcagctcatcatatgatgcgcaacttgaccgccggcatggccatg
atcacctgccgggagcccctgctcatgagcatcgccaccaacctgaagaacagctttgcc
gctgccctcagggcccccaccccccagcagagagagatgatggaggaagctgctgccagg
gttgcccaggacaactgtgagctggcctgctgcttcatccagaagactgcagtggagaag
gctggcccagagatggacaagaggctggcgacggagtttgagctgaggaagcatgcccgt
caggagggccgtcgctactgtgaccccgttgtgctgacctaccaggctgagcgcatgcca
gagcagatcagactcaaggttggaggcgtagaccccaaacagctggcggtgtatgaggag
tttgcccggaatgttccaggcttcctacccagcaacgacctgtctcagcccacaggattc
cttgcccagcccatgaagcaacaggcatgggccacggacgacgtggctcagatctatgac
aagtgcatggcagacctggagcagcacctccacgccatccctccagcgctgtccatgaac
cctcagacccaggctttgcgcagcctactggaggctgtggccctagccaggaactcccgg
gatggcattgccgctctgggcctgctgcagaaggctgtggagggtctgctggatgctacc
agtggtgccgatgccgacttgcttctgcggtacagagagtgccacctgctggtgctcaaa
gccctccaggacggccgggcatacgggccactgtggtgcaacaagcagattaccaggtgc
ctgattgagtgccgtgatgagtacaagtacaacgtggaggctgtggagctgctgatcaga
aaccacctggtcaacatgcagcagtacgacctgcacctggcacagtctatggagaatggg
ctgcactacatggcggtggcgtttgccatgcagctggtgaagctgctgttggtggatgag
cgcagtgtgagccacattaccgaggcagacttgttccacactatcgagactctgatgcga
accagcgcccactccagggccaacgcacctgaggggcttcctcagctgatggacgtggtc
cgttccaactacgaggccatgatcgaccgggcccacggaggacccaactttatgatgcac
tctggcatctcccaggcatccgagtacgacgacccaccgggcctgagggagaaggctgag
tacctgctgagggaatgggtcaacctgtaccactctgcagctgccggccgggacagtacc
aaggccttctctgcctttgtgggccagatgcaccagcagggcattctgaagaccgatgac
ctgatcactcgtttcttccggctgtgcacggagatgtgtgtggagattagctaccgcgcc
caggccgagcagcagcacaaccccgcggccagcgccgccatcatcagagccaagtgttac
cataacctggatgcctttgtgcgcctcatcgccctgctggtcaagcactccggagaggcc
accaacactgtcaccaagatcaacctgctcaacaaggttctaggtattgtggttggagtg
ttgatccaggaccatgatgtgaggcagactgagttccagcagttgccttaccaccgcatc
ttcatcatgctgttgctcgagctcaatgcccccgagcacgtgctggagaccatcaacttc
cagaccctcaccgccttctgcaacactttccacatcctgaggcctaccaaagcccctggc
tttgtttacgcttggctggagttgatctctcaccgtatcttcatcgccaggatgctggcg
cacaccccacagcagaagggttggcccatgtatgcccaacttctcattgatctgttcaag
tacctggcgcccttcctgaggaatgttgagcttaacaaacctatgcaaatcctctacaag
ggtaccctgcgtgtccttctggtcctactgcatgacttcccagagttcctgtgtgactac
cactacggcttctgcgacgtcatcccacccaactgcatccagctccgcaacctgattctg
agtgccttcccacgcaacatgaggcttccagaccccttcactcccaatctgaaggttgac
atgctcagcgagatcaacattgcgccgcgcatcctcacaaacttcaccggagtgatgccc
tctcagttcaagaaggatctggactcgtacctgaagacgcgctcccccgtcaccttcctc
tctgagctccgcagcaatctgcaggtagggggcgccactctgggtccctggaagtatttg
cagcacaacgacacatctttagaacaggtgtcaaatgagccaggcaaccgttacaacatc
cagctgatcaacgctctggtgctgtatgtgggaacccaggccatcgcacacatccacaac
aagggcagcaccccctccatgagcaccatcactcactcagcccacatggacatcttccag
aacctggctgtggacctggacactgaggggcgttatctcttcctgaatgccattgccaat
cagctgcgctacccaaacagccacacccattacttcagctgcaccatgctgtacctgttt
gctgaggccaacactgaggcaatccaggagcagattaccagggttcttctggagaggctg
attgtgaaccggcctcatccctggggactgctcatcaccttcatcgagctcatcaagaat
cccgccttcaagttctggagccacgactttgtacactgtgccccggagatcgagaagttg
ttccagtcagtggctcagtgctgcatggggcaaaagcaggctcagcaggtgatggagggc
actggtgccagttag
DBGET
integrated database retrieval system
