Oncorhynchus keta (chum salmon): 127929013
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Entry
127929013 CDS
T09424
Name
(RefSeq) LOW QUALITY PROTEIN: exosome complex component RRP45-like
KO
K03678
exosome complex component RRP45
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127929013
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oke03019
]
127929013
Messenger RNA biogenesis [BR:
oke03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
127929013
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PemK_toxin
Motif
Other DBs
NCBI-GeneID:
127929013
NCBI-ProteinID:
XP_052372605
LinkDB
All DBs
Position
Unknown
AA seq
414 aa
AA seq
DB search
MRDTPLSNCERDFLLKAIQEKKRLDGRQTYDYRSIKISFGTDYGCCFVDLGKTRIMAQVS
CELITPKENRPNEGLIFFNIELSPMASPAFEMGRQSELLVKLNRQLERCLRNSKCIDTES
LCVVSGEKVWQIRXDVHLLNHDGNLMDAASIAAIAALCHFRRPDVGIQGEEVTVYSTEER
DPIPLSIYHMPICVSFAFFQQGTYLLVDPCEREERVMDGLLMIAMNKHREICSIQSSGGI
MLLKDQVLRCSKIASVKVSEITELINKALENDKKARKTGGKFGFAESLPQERITALKTDV
SPVEMSDVKEKANEIVQRAEVPPQTVPSPVLTAPGTGQVGEGLENSWGLKEEEEEEEEED
ETMELKMELEEGHEEKGRGDVVVISDSDSEEEDVVILNQVTTKEKASSSNQQGQ
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
atgagagatacgccgttatcaaactgcgagcgggactttttactcaaagctattcaagaa
aaaaagcgcttggatgggagacagacctatgactacaggagcatcaagatctcgttcggg
acagattatggatgctgctttgttgacctggggaagacgagaatcatggcccaggtgtcc
tgtgagctcattactccgaaagagaaccgaccaaatgaaggactcattttcttcaacatt
gagctgtctcccatggcttctccagcatttgagatgggcaggcagtcagagctgttggtg
aagctgaacagacagttggagagatgcctcaggaactccaagtgtatagacacagagtct
ctgtgtgtggtgtctggagagaaggtgtggcagattaggntggacgtccacttgctgaac
cacgatggtaacctaatggacgctgccagcattgctgccatcgcggccctctgtcacttc
agacggcccgatgtgggcatccagggagaggaagtcactgtgtacagtacagaggagaga
gaccccattcccctcagcatctaccacatgcccatctgtgtcagttttgccttcttccaa
caagggacctacctgttggttgacccgtgtgagcgtgaggagcgtgtgatggacggcctg
ctgatgatagccatgaacaaacacagagagatctgctccatccagtctagtggaggcatc
atgctgctcaaagaccaggtcctcaggtgcagtaagatcgctagtgtcaaagtgtcagag
atcacagagctaatcaacaaagccttggagaacgacaagaaagccagaaaaactgggggt
aagtttggcttcgcagagtcgttgccccaggagcgaatcacagcgctgaaaacagacgtg
tcacctgtggaaatgagtgacgtcaaggagaaggccaatgagatcgtccagagagctgag
gtcccaccccaaaccgttccctctccagtgttaactgccccaggtacaggccaggtgggg
gaggggctagagaactcctggggtctgaaggaagaggaggaggaggaggaggaggaagat
gagaccatggagttgaagatggagttggaagagggacatgaggagaaggggagaggtgac
gtggtggtcatctcagacagtgacagcgaggaggaggatgttgtcatcttgaaccaggta
acaacaaaggagaaggcctccagctctaaccaacaggggcagtag
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