KEGG   Oncorhynchus kisutch (coho salmon): 109865292
Entry
109865292         CDS       T09179                                 
Name
(RefSeq) collagen alpha-1(IX) chain
  KO
K08131  collagen type IX alpha
Organism
oki  Oncorhynchus kisutch (coho salmon)
Pathway
oki04510  Focal adhesion
oki04512  ECM-receptor interaction
oki04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:oki00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    109865292
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    109865292
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    109865292
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00535 Proteoglycans [BR:oki00535]
    109865292
Proteoglycans [BR:oki00535]
 Extracellular matrix (ECM) proteoglycans
  Others
   109865292
SSDB
Motif
Pfam: Collagen
Other DBs
NCBI-GeneID: 109865292
NCBI-ProteinID: XP_031655673
LinkDB
Position
LG20:43752408..43767533
AA seq 687 aa
MTRARIYRESLLVILLQIILICSAQRGLVGLRGPAGPPGIAGVPGVDGIDGDRGDDNFTE
GGPGPDGEDGKPGTPGTPGLPGADGATGPVGGLGSDGPPGPKGEPGEAGEVGEIGEGPDG
PDGAAGAQGLVGELGKVGTPGSLGRRGPVGLPGPAGPRGLPGVYKGEDLCPNACPSGLNG
YSGLPGMKGHKGVKGESGEPGKQGHKGEEGDQAGEGEMGAQGLPGQGGPRGITGMMGLKG
DRGPRGTFGDLGPQGIQGGSGDVGQRGLVGENGPNGGQGARGPQGIRGLPGGKGEPGLAG
PDGREGIPGLPASKGITGKVGSPGDAGLQGLPGLPGAYGPKGKSGEMGNSGDPGSVGLMG
SPGKSGERGEQGEVGPVGARGGPGERGVRGPDGPAGAPGPRGGKGDLGLLGLPGPAGLVG
QNGDRGAVGLTGAQGEQGEAGSEGTAGDRGDFGDEGEPGEKGSMGRPGETGNKGPEGGRG
IPGPEGKPGQPGPRGMQGDRGVPGLPGTQGPAGKKPSDTHITQVCMRVMQEQLAQLAASL
RRPETGISGLPGPPGPPGPTGPSGENGYPGLDGARGLPGLKGPPGLLGRKGPKGDTGDRG
DRGPTARGVKGAPGAPGLPGDHGRAAYGTDGRDGERGPHGVPGIPGVPGSPGRPGLNGYC
ESSQCILPMVASPISAKDSSMKGPNEE
NT seq 2064 nt   +upstreamnt  +downstreamnt
atgactcgcgccaggatatatcgggagtcattactggtgattttattgcaaatcatcctt
atttgctccgctcagaggggcctggtcggtctcagaggccccgcaggaccccctggaata
gcaggagtgcctggagttgacggcattgatggagacagaggggacgataacttcacagaa
ggcggccctggccctgatggggaagacggcaaaccaggaactcccggaacacccggccta
ccaggggcagacggtgccactggacctgttgggggtctcggctcagatgggcctcctgga
ccaaaaggtgaacccggagaggctggggaagtcggggagattggcgagggacctgatggg
cctgatggagcagctggtgcacaagggttggtgggcgagcttggcaaagtcggaacccca
ggatcactgggaaggagggggccagtggggcttcccggacctgcagggcccaggggtctt
cctggagtgtataagggggaagacctgtgtcccaatgcctgtccttctggtcttaatgga
tattctggcctcccaggcatgaagggccacaaaggggtaaaaggagagtctggtgagcct
ggaaagcaaggacacaagggagaagaaggagaccaggcaggagagggcgagatgggagct
caaggactaccaggccaagggggacccaggggaataacaggcatgatgggcctcaaaggt
gacaggggaccacgtggaacgtttggagacctcggtccccagggaattcagggtggctca
ggtgacgtgggccaaagaggattagtgggcgagaatggaccaaacggtggtcaaggggcc
cgagggccacaaggaataaggggccttccagggggcaaaggggagcctggtcttgctggg
cccgatggacgtgaaggaatccccggattgccagcatctaagggtattactgggaaagtt
ggcagtccaggtgatgctgggctccaaggactccctggtttgccaggcgcttatggtcct
aaaggaaaaagtggcgagatgggtaactctggcgaccccggatctgtaggactaatgggg
tctcctgggaaatccggggaacgtggcgagcagggagaagtgggacctgtcggagcaaga
ggtggaccaggtgaaagaggagtgcgtggcccagacggacctgcaggggcacctggaccc
aggggaggtaaaggggatctcgggcttcttggtttgcctggccctgccggcctggttgga
cagaatggagacaggggtgcagtcggtttgaccggtgctcaaggagaacaaggagaagca
ggttcagagggcaccgcgggagacagaggggactttggtgacgaaggggagccaggagag
aaaggatcgatgggcagaccaggagagactggaaacaaagggccggagggcggccggggc
ataccaggcccagagggcaagccgggccaacctggaccacgtggcatgcagggagacaga
ggggtgccaggactgccagggacacaggggccagcggggaaaaaaccaagcgatacacac
atcacacaagtttgcatgagggtaatgcaagagcagctagcccagctagcagccagcctg
aggaggcctgagacaggcatctctggactgccaggtccccctggcccccctggtcctaca
ggcccctctggagagaacggctacccaggactggacggggccagaggactgccaggtctc
aaaggacctccaggactactgggtcgcaaagggcccaaaggtgacacgggcgacagagga
gacagaggacccacagcgagaggggttaaaggagcacctggagcacccggtctaccaggt
gatcacggtagagccgcctatggcacagacggccgcgacggcgagagagggccacacggc
gttcccggtattcccggcgttccagggtctcctggtcgtcctggcctcaacggctactgc
gagtcgtcacagtgcatccttcctatggtggcatcaccgatatctgcgaaagattccagc
atgaaagggccaaatgaggaataa

DBGET integrated database retrieval system