Oncorhynchus kisutch (coho salmon): 109865292
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Entry
109865292 CDS
T09179
Name
(RefSeq) collagen alpha-1(IX) chain
KO
K08131
collagen type IX alpha
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki04510
Focal adhesion
oki04512
ECM-receptor interaction
oki04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
109865292
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
109865292
09142 Cell motility
04820 Cytoskeleton in muscle cells
109865292
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
oki00535
]
109865292
Proteoglycans [BR:
oki00535
]
Extracellular matrix (ECM) proteoglycans
Others
109865292
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
109865292
NCBI-ProteinID:
XP_031655673
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Position
LG20:43752408..43767533
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AA seq
687 aa
AA seq
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MTRARIYRESLLVILLQIILICSAQRGLVGLRGPAGPPGIAGVPGVDGIDGDRGDDNFTE
GGPGPDGEDGKPGTPGTPGLPGADGATGPVGGLGSDGPPGPKGEPGEAGEVGEIGEGPDG
PDGAAGAQGLVGELGKVGTPGSLGRRGPVGLPGPAGPRGLPGVYKGEDLCPNACPSGLNG
YSGLPGMKGHKGVKGESGEPGKQGHKGEEGDQAGEGEMGAQGLPGQGGPRGITGMMGLKG
DRGPRGTFGDLGPQGIQGGSGDVGQRGLVGENGPNGGQGARGPQGIRGLPGGKGEPGLAG
PDGREGIPGLPASKGITGKVGSPGDAGLQGLPGLPGAYGPKGKSGEMGNSGDPGSVGLMG
SPGKSGERGEQGEVGPVGARGGPGERGVRGPDGPAGAPGPRGGKGDLGLLGLPGPAGLVG
QNGDRGAVGLTGAQGEQGEAGSEGTAGDRGDFGDEGEPGEKGSMGRPGETGNKGPEGGRG
IPGPEGKPGQPGPRGMQGDRGVPGLPGTQGPAGKKPSDTHITQVCMRVMQEQLAQLAASL
RRPETGISGLPGPPGPPGPTGPSGENGYPGLDGARGLPGLKGPPGLLGRKGPKGDTGDRG
DRGPTARGVKGAPGAPGLPGDHGRAAYGTDGRDGERGPHGVPGIPGVPGSPGRPGLNGYC
ESSQCILPMVASPISAKDSSMKGPNEE
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atgactcgcgccaggatatatcgggagtcattactggtgattttattgcaaatcatcctt
atttgctccgctcagaggggcctggtcggtctcagaggccccgcaggaccccctggaata
gcaggagtgcctggagttgacggcattgatggagacagaggggacgataacttcacagaa
ggcggccctggccctgatggggaagacggcaaaccaggaactcccggaacacccggccta
ccaggggcagacggtgccactggacctgttgggggtctcggctcagatgggcctcctgga
ccaaaaggtgaacccggagaggctggggaagtcggggagattggcgagggacctgatggg
cctgatggagcagctggtgcacaagggttggtgggcgagcttggcaaagtcggaacccca
ggatcactgggaaggagggggccagtggggcttcccggacctgcagggcccaggggtctt
cctggagtgtataagggggaagacctgtgtcccaatgcctgtccttctggtcttaatgga
tattctggcctcccaggcatgaagggccacaaaggggtaaaaggagagtctggtgagcct
ggaaagcaaggacacaagggagaagaaggagaccaggcaggagagggcgagatgggagct
caaggactaccaggccaagggggacccaggggaataacaggcatgatgggcctcaaaggt
gacaggggaccacgtggaacgtttggagacctcggtccccagggaattcagggtggctca
ggtgacgtgggccaaagaggattagtgggcgagaatggaccaaacggtggtcaaggggcc
cgagggccacaaggaataaggggccttccagggggcaaaggggagcctggtcttgctggg
cccgatggacgtgaaggaatccccggattgccagcatctaagggtattactgggaaagtt
ggcagtccaggtgatgctgggctccaaggactccctggtttgccaggcgcttatggtcct
aaaggaaaaagtggcgagatgggtaactctggcgaccccggatctgtaggactaatgggg
tctcctgggaaatccggggaacgtggcgagcagggagaagtgggacctgtcggagcaaga
ggtggaccaggtgaaagaggagtgcgtggcccagacggacctgcaggggcacctggaccc
aggggaggtaaaggggatctcgggcttcttggtttgcctggccctgccggcctggttgga
cagaatggagacaggggtgcagtcggtttgaccggtgctcaaggagaacaaggagaagca
ggttcagagggcaccgcgggagacagaggggactttggtgacgaaggggagccaggagag
aaaggatcgatgggcagaccaggagagactggaaacaaagggccggagggcggccggggc
ataccaggcccagagggcaagccgggccaacctggaccacgtggcatgcagggagacaga
ggggtgccaggactgccagggacacaggggccagcggggaaaaaaccaagcgatacacac
atcacacaagtttgcatgagggtaatgcaagagcagctagcccagctagcagccagcctg
aggaggcctgagacaggcatctctggactgccaggtccccctggcccccctggtcctaca
ggcccctctggagagaacggctacccaggactggacggggccagaggactgccaggtctc
aaaggacctccaggactactgggtcgcaaagggcccaaaggtgacacgggcgacagagga
gacagaggacccacagcgagaggggttaaaggagcacctggagcacccggtctaccaggt
gatcacggtagagccgcctatggcacagacggccgcgacggcgagagagggccacacggc
gttcccggtattcccggcgttccagggtctcctggtcgtcctggcctcaacggctactgc
gagtcgtcacagtgcatccttcctatggtggcatcaccgatatctgcgaaagattccagc
atgaaagggccaaatgaggaataa
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