KEGG   Oncorhynchus kisutch (coho salmon): 109869012
Entry
109869012         CDS       T09179                                 
Name
(RefSeq) collagen alpha-3(IX) chain
  KO
K08131  collagen type IX alpha
Organism
oki  Oncorhynchus kisutch (coho salmon)
Pathway
oki04510  Focal adhesion
oki04512  ECM-receptor interaction
oki04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:oki00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    109869012
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    109869012
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    109869012
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00535 Proteoglycans [BR:oki00535]
    109869012
Proteoglycans [BR:oki00535]
 Extracellular matrix (ECM) proteoglycans
  Others
   109869012
SSDB
Motif
Pfam: Collagen
Other DBs
NCBI-GeneID: 109869012
NCBI-ProteinID: XP_020314410
Ensembl: ENSOKIG00005013351
LinkDB
Position
LG24:complement(25196324..25219082)
AA seq 678 aa
MAMFSALGLLLLCQLLTSSTAQRPGPRGAVGPPGPPGPDGKDGTDGKDGPAGLSGKAGPK
GKAGGAGGPGNPGLPGLPGVDGLTGADGPAGKDGPPGDVGDAGPSGPGGPPGRGRPGAPG
PPGANGLEGGIGPQGPAGPEGLPGLSGPPGLDGPPGLPGALPDGSGDLLCPAICPPGPSG
PPGMPGFKGHTGHKGDKGELGKDGEKGNAGPPGPPGIPGTVGLQGPRGLRGLQGPMGAVG
DRGLPGFRGKPGTAGIIGKTGDAGEKGPEGFRGPKGEIGKIGPKGVSGGAGPKGEPGIPG
RDGKDGTQGLDGEKGDAGRNGVPGEKGPNGLPGLQGKAGAKGAKGGVGDPGEMGEAGPSG
EPGIPGDIGIPGERGEVGPRGVAGGVGPVGNIGVQGSKGFQGIKGALGDPGLPGPTGIRG
GFGERGPVGASGPKGDMGMAGADGLPGENGEPGPFGPVGQKGESGKRGELGPKGVVGPQG
ELGARGVPGKPGLMGFQGEQGLPGIAGKIGVPGKLASEQHIRELCGSMIDDQIAQLAANL
RRPLSPGQVGRPGAAGLPGKVGETGSIGHPGSRGPPGYRGLPGDLGDPGPRGDLGEQGDK
GPIGKAIEGPIGDQGYQGIPGVLGIVKDGRDGSPGDPGEPGEAGRTGRTGHSGSPGICDT
TACQGANVHGKTSNPKNH
NT seq 2037 nt   +upstreamnt  +downstreamnt
atggctatgttttcagctctcgggctgctcttgctgtgccagcttttgacatcatccaca
gcccagagacccggcccacgaggagcagtcggaccgccaggacccccgggacccgatgga
aaggatggcactgatggcaaagatggcccggctggactttcaggaaaagctggacccaag
gggaaagcagggggagcaggaggaccagggaacccaggcctgcctggcctccctggggtg
gacggattgacaggtgctgatgggcctgctgggaaagacggtcctccgggggatgtgggt
gacgctggaccttctgggccaggtggacctcctggcagagggagaccaggagctccaggg
ccacctggagccaatgggcttgagggaggaatcgggccacagggaccagcgggccctgag
ggtcttccaggattatccgggcctcccggccttgatggaccaccaggtcttcctggggct
ctccctgatggcagtggagatctgttgtgtcctgccatctgtcctcctggcccctctggc
cctccaggaatgcctggattcaagggtcacacagggcacaaaggagataagggagagctc
gggaaagatggcgagaagggtaatgctggcccacctggtcctccagggattcccggcact
gtcggcctgcagggtcctcgtggtttgaggggacttcagggcccaatgggggcagtagga
gacaggggtttaccaggtttccgaggcaaacctggtactgctggcatcatcggcaagaca
ggtgatgctggagagaaaggaccagagggatttagagggccaaagggagagattggcaaa
attggtccaaagggagtttctggcggagcaggacccaaaggggagcccggcatcccaggc
agagacgggaaagatggcacccagggactggacggcgagaagggagacgctggacggaat
ggggtacccggtgagaaaggacccaacggccttcctggtttacaaggaaaggctggcgca
aagggcgccaaaggaggagttggtgacccaggagagatgggagaggcagggccatctgga
gagccaggtattcctggcgacattggtattccaggagagaggggcgaggtgggacccaga
ggagtggctgggggcgtcggaccagtgggcaacatcggggttcagggcagcaaaggcttc
cagggaataaagggggctcttggtgaccctggccttcccggaccaaccgggattcgcggc
ggatttggtgagaggggtccagttggagcatcaggccctaaaggagacatgggcatggca
ggagctgatggtttgcccggggagaatggagaacctggtccatttggtccagttggccaa
aaaggagagtctgggaagcgtggcgagctgggacctaaaggtgttgtgggaccacaggga
gagctcggagccagaggggttcctgggaaaccaggcctaatgggcttccagggtgaacag
ggtctgcctggaatcgctggcaagattggtgttcccggtaaactggcaagtgaacagcac
attagagaattgtgtggatctatgattgatgatcagattgcacagctggctgccaacctc
agaaggcccctgtcccctggccaagtgggtcgccccggtgctgccggacttccagggaaa
gtaggcgagactgggtctattggtcaccccggctcccgtggacctcctggctacagagga
ctgcctggagacctgggagaccccggtcccagaggtgatcttggtgaacagggtgacaag
ggacccatcggaaaggccatcgaagggcccattggagaccaaggataccaaggtatccca
ggagtgcttggaatcgtcaaagacgggcgtgacggatccccaggagatccaggtgagcct
ggagaggcaggtaggacaggaaggactgggcactcgggctccccaggaatctgtgacact
accgcctgccagggggcaaatgtccatgggaaaacctccaatcccaagaaccattaa

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