Oncorhynchus kisutch (coho salmon): 109869012
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Entry
109869012 CDS
T09179
Name
(RefSeq) collagen alpha-3(IX) chain
KO
K08131
collagen type IX alpha
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki04510
Focal adhesion
oki04512
ECM-receptor interaction
oki04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
109869012
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
109869012
09142 Cell motility
04820 Cytoskeleton in muscle cells
109869012
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
oki00535
]
109869012
Proteoglycans [BR:
oki00535
]
Extracellular matrix (ECM) proteoglycans
Others
109869012
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
109869012
NCBI-ProteinID:
XP_020314410
Ensembl:
ENSOKIG00005013351
LinkDB
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Position
LG24:complement(25196324..25219082)
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AA seq
678 aa
AA seq
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MAMFSALGLLLLCQLLTSSTAQRPGPRGAVGPPGPPGPDGKDGTDGKDGPAGLSGKAGPK
GKAGGAGGPGNPGLPGLPGVDGLTGADGPAGKDGPPGDVGDAGPSGPGGPPGRGRPGAPG
PPGANGLEGGIGPQGPAGPEGLPGLSGPPGLDGPPGLPGALPDGSGDLLCPAICPPGPSG
PPGMPGFKGHTGHKGDKGELGKDGEKGNAGPPGPPGIPGTVGLQGPRGLRGLQGPMGAVG
DRGLPGFRGKPGTAGIIGKTGDAGEKGPEGFRGPKGEIGKIGPKGVSGGAGPKGEPGIPG
RDGKDGTQGLDGEKGDAGRNGVPGEKGPNGLPGLQGKAGAKGAKGGVGDPGEMGEAGPSG
EPGIPGDIGIPGERGEVGPRGVAGGVGPVGNIGVQGSKGFQGIKGALGDPGLPGPTGIRG
GFGERGPVGASGPKGDMGMAGADGLPGENGEPGPFGPVGQKGESGKRGELGPKGVVGPQG
ELGARGVPGKPGLMGFQGEQGLPGIAGKIGVPGKLASEQHIRELCGSMIDDQIAQLAANL
RRPLSPGQVGRPGAAGLPGKVGETGSIGHPGSRGPPGYRGLPGDLGDPGPRGDLGEQGDK
GPIGKAIEGPIGDQGYQGIPGVLGIVKDGRDGSPGDPGEPGEAGRTGRTGHSGSPGICDT
TACQGANVHGKTSNPKNH
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atggctatgttttcagctctcgggctgctcttgctgtgccagcttttgacatcatccaca
gcccagagacccggcccacgaggagcagtcggaccgccaggacccccgggacccgatgga
aaggatggcactgatggcaaagatggcccggctggactttcaggaaaagctggacccaag
gggaaagcagggggagcaggaggaccagggaacccaggcctgcctggcctccctggggtg
gacggattgacaggtgctgatgggcctgctgggaaagacggtcctccgggggatgtgggt
gacgctggaccttctgggccaggtggacctcctggcagagggagaccaggagctccaggg
ccacctggagccaatgggcttgagggaggaatcgggccacagggaccagcgggccctgag
ggtcttccaggattatccgggcctcccggccttgatggaccaccaggtcttcctggggct
ctccctgatggcagtggagatctgttgtgtcctgccatctgtcctcctggcccctctggc
cctccaggaatgcctggattcaagggtcacacagggcacaaaggagataagggagagctc
gggaaagatggcgagaagggtaatgctggcccacctggtcctccagggattcccggcact
gtcggcctgcagggtcctcgtggtttgaggggacttcagggcccaatgggggcagtagga
gacaggggtttaccaggtttccgaggcaaacctggtactgctggcatcatcggcaagaca
ggtgatgctggagagaaaggaccagagggatttagagggccaaagggagagattggcaaa
attggtccaaagggagtttctggcggagcaggacccaaaggggagcccggcatcccaggc
agagacgggaaagatggcacccagggactggacggcgagaagggagacgctggacggaat
ggggtacccggtgagaaaggacccaacggccttcctggtttacaaggaaaggctggcgca
aagggcgccaaaggaggagttggtgacccaggagagatgggagaggcagggccatctgga
gagccaggtattcctggcgacattggtattccaggagagaggggcgaggtgggacccaga
ggagtggctgggggcgtcggaccagtgggcaacatcggggttcagggcagcaaaggcttc
cagggaataaagggggctcttggtgaccctggccttcccggaccaaccgggattcgcggc
ggatttggtgagaggggtccagttggagcatcaggccctaaaggagacatgggcatggca
ggagctgatggtttgcccggggagaatggagaacctggtccatttggtccagttggccaa
aaaggagagtctgggaagcgtggcgagctgggacctaaaggtgttgtgggaccacaggga
gagctcggagccagaggggttcctgggaaaccaggcctaatgggcttccagggtgaacag
ggtctgcctggaatcgctggcaagattggtgttcccggtaaactggcaagtgaacagcac
attagagaattgtgtggatctatgattgatgatcagattgcacagctggctgccaacctc
agaaggcccctgtcccctggccaagtgggtcgccccggtgctgccggacttccagggaaa
gtaggcgagactgggtctattggtcaccccggctcccgtggacctcctggctacagagga
ctgcctggagacctgggagaccccggtcccagaggtgatcttggtgaacagggtgacaag
ggacccatcggaaaggccatcgaagggcccattggagaccaaggataccaaggtatccca
ggagtgcttggaatcgtcaaagacgggcgtgacggatccccaggagatccaggtgagcct
ggagaggcaggtaggacaggaaggactgggcactcgggctccccaggaatctgtgacact
accgcctgccagggggcaaatgtccatgggaaaacctccaatcccaagaaccattaa
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