Oncorhynchus kisutch (coho salmon): 109871810
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Entry
109871810 CDS
T09179
Name
(RefSeq) LOW QUALITY PROTEIN: 5'-3' exoribonuclease 1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03008
Ribosome biogenesis in eukaryotes
oki03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
109871810
09123 Folding, sorting and degradation
03018 RNA degradation
109871810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oki03019
]
109871810
03009 Ribosome biogenesis [BR:
oki03009
]
109871810
03016 Transfer RNA biogenesis [BR:
oki03016
]
109871810
03036 Chromosome and associated proteins [BR:
oki03036
]
109871810
Messenger RNA biogenesis [BR:
oki03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
109871810
mRNA degradation factors
5'-3' decay
5' exonucleases
109871810
Ribosome biogenesis [BR:
oki03009
]
Eukaryotic type
Pre-60S particles
RNases
109871810
Transfer RNA biogenesis [BR:
oki03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
109871810
Chromosome and associated proteins [BR:
oki03036
]
Eukaryotic type
Gene silencing
piRNA pathway
109871810
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
Motif
Other DBs
NCBI-GeneID:
109871810
NCBI-ProteinID:
XP_031663207
Ensembl:
ENSOKIG00005039881
LinkDB
All DBs
Position
LG27:28318255..28356195
Genome browser
AA seq
1698 aa
AA seq
DB search
MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNGIIHQCSHPNDEDVHFRISEEKI
FADIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKALEKGE
VLPSEARFDSNCITPGTDFMARLQEQLKYFVNSKLSTDNAWKGVNVYLSGHETPGEGEHK
IMEFIRWENTKPDHDPNTRHCLYGLDADLMMLGLTSHEPHFSLLREEVRFGGKKNQKRIT
APEETTFHLLHLSLFREYIDYEFSEVKNKISFEYDLERIIDDWILMGFLVGNDFIPHLPH
LHINHDALPLLYRTYISVLPTLGGYLNENGHLNLGNFEKYLEKLSEFDREHFNEVFVDLK
WFESKVGNKYLNEAAGLAAEEAHCKDSRKKDLKDSLRLAALDEGRGPSRGFEEDGEEEDM
FEAEFRQYKRTYYMTKMGVEVVSDEFLANQALCYVEGIQWILHYYYHGVQSWSWYYPHHY
APFLSDVRNIAHLKLTFDMGKPFMPFQQLLGVLPSASKDLLPQSYRHLMTSESSSIIEYY
PLDFKTDLNGKQQEWEAVVLIPFIDERCLLAAMEPYNDHMTKAEKARNRHTQCAVYSYHA
ELDYPSTSTLPDLFPNIMHCHVRVTPVPMDAWHVSLSHVGRSINSSQLYFCGFPTLKHIR
HKFYKKKHGVVVFQQSSRGENMMLEITPSKEEPVCDNVASLVLGRSVFVNWPHLEEARVV
AVSDGESKFFLEEPAGMQKLYDGDSPPPTKVTYLSDKEQKDWVKDVQGITEHFGKRKGIT
VNETAVVLYTQLLTGRKYVPGQSGQVHLEKQWSKQILPFPYQTIVKDIKAFDSSSTRFKT
LEELFPPTTTVFMVGNPYYGAMGEVQESSDVIKEGRVRVVFTVPCEPPMESLIQNQHKYC
VKYSPGYVLASRLGITGYLVSRFSGSIFVGRGSKKNPHGEQKANVGLNLKFNKKNEEVPG
YTKRTEKEWLYSVAVEDLMAEYLDRFSEVFDLVSRNSHDDVFYEDDIWPGVDQNGAERVK
EITSWLKTHPVADIARASCDLQILDTAIVEQIEEEVAKVKKSSKKVRVTVKPHLLFRPLE
QQHGVVPDPDAEYHLFDRVVNVRESFSXPLGLRGTIIGIKGADREAEILYEVVFDEEFAG
GLTIRCASGRGYRLPPCALINLSHGCRFEQGSHKLTAIVKPQPAAASHHHAHNKEQLSGL
NHSPRSPFIPTQQQNGRQNILRADTQGNKNVHHNALSQKHQPKGKDEEFSNVWQSLQSSG
MPQKPPAHWQQNNACNSAWGPGSPGQEGQFQGQQGRNQPQSQQQQPPKPGPAGSIRLLKR
NEDVNTLFPAQNATKKQTEFEELIANLKITKGNEPTSQSEEPLSPQSFAMKGTLALKEML
NIGSVPDSTSLSSSNTQQQNRRRATKKLAARMGDLVSPVSAAAVPPLQAHQPSSMGPSVA
SELARICVGLGMAPPDFTFIRSRQGLMVCQVKLSSGLLVHGPQSHSENEAKEKAALFALQ
RLNSVGSGFPMPPPLFSGVSQIRGPSMGPMTNVFGQSGGLLIPPQGYGPLHWGMPLPPHQ
GQPFYGGTFPGARPQAPSVPIGSHNQFVPLQVTKKRVSSGKKPQEFYNAAHTARNQAPSN
KAQSDSQPSLSPAPSAPPAAPITPLKTAQDPPEMAGTPSTPQTPRQNPTPGHGHTPSSAS
KRKHRKLAVNFEVAKVQE
NT seq
5097 nt
NT seq
+upstream
nt +downstream
nt
atgggagtgccgaaattctaccgatggatttcagagcgatacccttgcctgagtgaagtt
gtcaaggaacatcagattccggagtttgacaacctctacctggatatgaatggcatcatc
caccagtgctcccaccccaatgacgaggacgtccacttccgtatctcggaggagaagatc
tttgcagacatcttccactatctggaggtgctgttcaggatcatcaagcccaggaaggtg
ttcttcatggctgtggatggggtggctcctcgggccaagatgaaccagcagagaggcagg
agattcaggtcggccaaagaagcagaggacaagataaagaaggccctagagaaaggagag
gtcctaccctctgaggcccgctttgactctaactgcatcacacctgggacggacttcatg
gccaggttacaggagcagctcaagtactttgtcaacagtaaactgtccacagacaatgcc
tggaaaggagttaacgtctacctttctggacacgagactccaggagaaggagaacataag
atcatggagtttatccgctgggaaaacaccaagccagaccacgacccaaacacacgccac
tgtctctatggcctggacgctgacctgatgatgttaggtctgacgagccatgagccacac
ttctccctactcagagaagaggtccgctttggagggaagaaaaaccagaaaagaataact
gctccagaggagacaaccttccacctactgcacctgtcactatttagggagtacatagac
tacgagttctctgaagttaagaataagatctcatttgagtacgacctggagcgaatcata
gatgactggatcctgatgggctttcttgttgggaatgacttcatccctcatcttcctcat
cttcacataaaccacgacgccctacctcttctctaccgcacctacatcagtgtgctgcca
acactaggaggatacctgaatgagaatggtcacctgaacctgggaaactttgagaagtac
ctggagaaactgtcagagtttgacagggagcacttcaatgaggtgtttgtggatctgaag
tggtttgagagtaaggtggggaacaagtacttgaacgaggcagcagggctggcagcagag
gaggctcactgcaaggattccaggaagaaagacctgaaagactctctgcgtctggctgcg
ctggatgagggcagaggccccagcagaggttttgaggaggatggggaggaagaagacatg
tttgaagcagagttccgacagtacaagcgcacctactacatgaccaagatgggagtggag
gtggtctcagatgagtttctagccaaccaggcgttgtgctatgtggagggaatccagtgg
atcctacattactactaccatggagtccaatcctggagctggtattacccgcaccactat
gcccccttcctgtcagatgtgcggaacatagcccatctgaagttgacctttgacatgggc
aagcctttcatgcccttccagcagctgctgggagtcctgccttctgccagcaaagacctg
ctgccccagagctataggcacctgatgacatcagagagttctagcatcattgagtattac
cctctggacttcaagacagaccttaatgggaaacaacaggagtgggaggctgtggtgctc
atccccttcattgacgagagatgtctgcttgctgcgatggagccttataacgatcacatg
accaaggctgagaaggcccgtaaccgccacacacagtgtgctgtgtacagctaccacgct
gagctagactacccctccacctccaccctgcctgacctgttccccaacatcatgcactgc
catgtcagagtgacaccggttcccatggatgcgtggcacgtgtcgttgagccacgtgggg
cgcagtatcaacagcagccagctctacttctgtggcttccccaccttaaagcacatcaga
cacaagttctataagaagaagcacggggtggtggtgttccagcagagcagccgaggagag
aacatgatgctggagatcacacctagcaaggaggaacctgtgtgtgacaatgtggcctct
ctggtcctgggtcggtctgtgtttgtcaactggccccacctagaggaggccagggtggta
gcagtgtctgacggggagagcaagttcttcctggaggagccggcagggatgcagaagctg
tacgacggggactctcctccccccactaaggtcacctacctcagtgacaaggaacagaag
gactgggttaaggacgtacagggcatcactgagcatttcggcaagcgtaagggcattacg
gtgaatgagacggcggtggttttgtatacccagctgctgacaggcaggaagtatgtacct
gggcagagtggacaggtgcacctggagaaacagtggtccaagcagatactgcccttcccc
taccagaccatcgtcaaggacatcaaagcctttgactcgtcatccactcgcttcaagacc
ctggaggagctgtttcccccgacgaccacggttttcatggtggggaacccctactacggt
gccatgggagaggtgcaggagtccagtgatgtcatcaaagagggacgggtgcgggtggtg
ttcacggtgccctgtgaaccaccgatggaatccttaatacagaaccagcataaatactgt
gtgaagtacagtccaggctacgttctggcctcacgcctcggcatcaccggctacctcgtc
tccagattctctggcagcatcttcgtcggcagaggatccaagaaaaatccccatggggag
cagaaggctaacgtgggtctgaacctgaagttcaataagaagaatgaggaggtgccaggt
tacaccaagagaactgagaaggagtggctctattctgtcgctgtggaggatctgatggct
gagtacttggataggttctctgaggtgtttgacctggtgtccaggaacagtcacgacgat
gtcttctacgaggacgacatctggcccggagtggaccaaaacggggcggagagggtgaag
gagatcacttcctggttgaagacacacccagtcgccgacatcgcccgggcgtcatgtgac
ctgcagatcctggacacggccatcgtggagcagatcgaggaggaggtggctaaggtcaag
aagagcagcaagaaagtgcgtgtgaccgtcaagccacatttactcttcaggcccttagag
cagcagcacggtgtggtccctgacccggatgcagagtaccacctgtttgaccgggtggtc
aacgtcagagagagcttctctngtcccctcggcctcagaggaaccatcatcggaatcaag
ggagctgatcgggaggctgagatcttgtatgaggttgtgtttgatgaagagtttgctggg
ggacttactatcaggtgtgcgtcgggccgtggctacaggctgcctccgtgtgccttaatc
aacctgagccatggatgccgctttgagcagggttcacacaaactgaccgccatcgtcaaa
ccccagcctgccgccgcctcccaccaccacgcacacaacaaagaacagctgtctgggctt
aaccactcaccacgctcacccttcatacccacacagcagcagaacggcagacaaaacatt
ctcagggcagacactcaggggaacaaaaatgtgcaccacaatgccctcagccagaaacac
cagccgaagggtaaagatgaggagttcagtaatgtgtggcagtctctgcagagttctgga
atgccccagaaaccaccagcccactggcaacaaaacaatgcgtgtaattctgcctggggt
ccagggtctcccggacaggaagggcagttccaggggcaacagggcaggaaccaaccccag
agtcaacaacaacaaccccccaaacctggtccagcaggaagtatcagactgctgaagaga
aatgaagatgtcaacactctgtttcccgctcagaacgccacaaagaagcagacagagttt
gaggagttgatcgccaacctgaagatcactaagggcaacgagccaacgagtcaatcggag
gagccgctgtctccgcagtcattcgctatgaaggggactctggccctgaaggagatgctg
aacattggctctgtcccggactccactagtctctcctcctccaacacacagcagcagaac
aggagaagagccaccaagaaactggcggcaaggatgggagacttagtgtcacctgtgtcc
gcagcagcagtccctcccctgcaggcccaccagccctcctccatgggtcccagtgtggcc
tcagagctggctaggatctgtgtaggtctgggcatggccccccccgacttcaccttcata
cgcagcagacagggtttgatggtgtgtcaggtgaagctctccagtggtctgcttgtccac
ggtcctcagagtcactctgagaacgaagccaaagagaaggcagctctcttcgccctgcag
cgccttaattcggtgggttctgggtttcccatgcctccgcctctgttctccggggtcagc
cagataagaggaccgtccatgggacccatgactaacgtattcggccaatcgggtggtctg
ttaatccctcctcaggggtatggtcctctccactggggcatgcctctccctccccaccag
gggcagcccttctacgggggcaccttccctggcgcccggccccaggcaccctccgtcccc
atcggctcacacaaccagtttgtccccctgcaggtgactaagaagcgcgtgtcatcaggc
aagaagccacaagagttctacaatgcggctcacacggcgaggaaccaagccccaagtaac
aaagcccagtctgactcccaaccctccctatccccagccccctcagcaccccctgcagcc
cccatcacacccctaaagaccgcccaggacccccctgagatggctgggaccccctccacg
ccacagacgccacgccagaaccccaccccaggccatggccacacccccagctctgcctcc
aagaggaaacacaggaaactggcggtcaactttgaagtggccaaagtccaagaatga
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integrated database retrieval system
