Oncorhynchus kisutch (coho salmon): 109876791
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Entry
109876791 CDS
T09179
Name
(RefSeq) collagen alpha-1(IX) chain
KO
K08131
collagen type IX alpha
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki04510
Focal adhesion
oki04512
ECM-receptor interaction
oki04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
109876791
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
109876791
09142 Cell motility
04820 Cytoskeleton in muscle cells
109876791
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
oki00535
]
109876791
Proteoglycans [BR:
oki00535
]
Extracellular matrix (ECM) proteoglycans
Others
109876791
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
109876791
NCBI-ProteinID:
XP_031669049
Ensembl:
ENSOKIG00005043881
UniProt:
A0A8C7KM79
LinkDB
All DBs
Position
Unknown
AA seq
676 aa
AA seq
DB search
MAHGQLFWVLLVQIVLICSTQRASGPVGPPGPAGVPGIDGVAGGRGDDGEDGPAGPDGDA
GKLGSAGLPGVPGADGLTGPTGDEGPDGPLGQKGEPGKPGPRGLAGVGDDGPPGPPGPGG
LPGDLGKGGPPGAMGVRGPTGPGGSVGPRGAAGMQDLSAELCPGACPPGTPGHPGLPGMK
GHKGVKGEGGEPGKQGHKGEEGDQGTTGDLGSQGPTGPQGIRGSTGMMGPKGGLGARGHD
GDPGPQGVEGATGDQGQRGVMGEFGPKGDEGSQGGRGITGLPGPKGKGGLSGVDGREGIP
GLPGGKGTIGKAGSPGEVGLQGLPGLPGSPGSKGTGGEKGSSGEAGLLGTIGSAGKTGEQ
GKVGGLGPIGPIGGPGDSGVQGPAGPPGKPGARGPKGDLGLPGVPGPPGLPGVKGERGEA
GEGGPKGEQGGQGSEGTSGDKGDVGDQGEAGPKGVVGNPGEPGNRGPEGSRGQPGIEGPA
GTSGPRGMQGNRGAPGIRGSQGPAGKEPSDQHIRQVCMRVMQEQLAQLAASLRRPESGAA
GLPGKPGPPGPAGPPGDSGFPGQAGARGLPGLKGPPGLLGLKGPKGELGDRGDRGPTVRG
AKGQPGPPGLPGEPGKPGYGQEGRDGERGPPGVPGQAGVPGPPGNAGPNGYCDPSSCNLR
PGDIDTSIKGPEGTRN
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atggctcacgggcaacttttttgggtacttttggtgcagattgtccttatttgctccaca
caaagggcctcgggccccgtcggccctccaggacccgcaggtgtcccaggaattgatggc
gtcgctggtgggaggggagacgacggagaggatggccctgctggtcctgatggagatgca
ggtaaactaggctcagccgggttgccaggtgtgcccggggctgatggtttgactggtcct
actggagacgaaggtcccgatggtccccttggacagaaaggtgaacccgggaaaccaggg
cctcgtggactagctggcgttggagacgatggaccccctggacccccggggccaggagga
cttccaggtgatttgggcaaaggtggaccccctggtgctatgggagtgagaggaccaaca
ggacctggtggatcagtagggccgagaggtgcagcagggatgcaggatttgagtgcagag
ctgtgccctggtgcctgtccacctgggacacctggtcatcccggcctccctggcatgaag
ggtcacaaaggagtaaaaggggaaggaggagagcctgggaaacaagggcacaagggtgaa
gagggtgaccagggaaccacaggggacctcggatcccagggcccgacgggtcctcaggga
atcagaggctccactggaatgatggggcccaaaggtggactgggagcacgaggacatgat
ggagatccaggtccccagggtgttgaaggagccactggtgaccaaggtcagaggggcgtg
atgggcgagtttggtcctaaaggtgatgagggatctcaaggtggaagaggaatcacaggt
cttcctgggcccaagggaaagggtggtttgtcaggagtggatggccgtgaaggtattcct
ggattgccaggtggaaagggcaccattggcaaggctgggtccccaggggaggtggggctt
cagggacttcctggattacctggttctcctggctctaaaggaactggtggagagaagggt
agctctggagaggcaggtcttcttggaacaataggatctgctggtaaaacaggagagcaa
ggcaaagtaggaggtctaggacccattggaccaattggtggaccgggagacagcggagta
caaggaccagccggtccaccgggcaaaccaggggccaggggacctaaaggagatcttggt
cttcctggtgttcccggacccccaggcctccccggagtgaagggagagaggggagaagct
ggtgagggaggacctaaaggggagcaggggggacaaggttctgagggaacctctggagac
aaaggagatgttggtgaccaaggggaagctggacccaaaggagtggttggaaacccagga
gagcctggtaacagagggccagagggtagcagagggcagcctggcatcgagggcccagct
ggtacttctggaccccgtggcatgcagggcaacaggggcgcaccaggaatcagggggtca
cagggaccggcgggtaaagaaccaagcgatcaacacatcagacaagtctgcatgagagtt
atgcaagagcagctagcccagttggctgccagtctaaggaggccggagtctggagcagcg
ggcctgcctggtaagccagggcctcctggtcctgccggacccccaggggacagtggcttc
cctgggcaggctggcgcaagaggactgcctggactcaaaggacctccaggactcctagga
ctcaaaggacccaaaggtgaattgggcgacagaggagaccgaggtcccacggtgcgaggg
gccaagggccagccaggacctcccggtctaccaggtgagcccggaaagcctggttacggc
caggagggacgtgacggcgagagaggacctccaggtgttcctggccaggctggtgtacct
gggcctcctggtaatgctggtcccaacggctactgcgacccatcgtcctgcaacctcaga
ccgggggacattgacaccagcatcaagggcccggagggaactagaaactag
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