KEGG   Oncorhynchus kisutch (coho salmon): 109876791
Entry
109876791         CDS       T09179                                 
Name
(RefSeq) collagen alpha-1(IX) chain
  KO
K08131  collagen type IX alpha
Organism
oki  Oncorhynchus kisutch (coho salmon)
Pathway
oki04510  Focal adhesion
oki04512  ECM-receptor interaction
oki04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:oki00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    109876791
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    109876791
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    109876791
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00535 Proteoglycans [BR:oki00535]
    109876791
Proteoglycans [BR:oki00535]
 Extracellular matrix (ECM) proteoglycans
  Others
   109876791
SSDB
Motif
Pfam: Collagen
Other DBs
NCBI-GeneID: 109876791
NCBI-ProteinID: XP_031669049
Ensembl: ENSOKIG00005043881
UniProt: A0A8C7KM79
LinkDB
Position
Unknown
AA seq 676 aa
MAHGQLFWVLLVQIVLICSTQRASGPVGPPGPAGVPGIDGVAGGRGDDGEDGPAGPDGDA
GKLGSAGLPGVPGADGLTGPTGDEGPDGPLGQKGEPGKPGPRGLAGVGDDGPPGPPGPGG
LPGDLGKGGPPGAMGVRGPTGPGGSVGPRGAAGMQDLSAELCPGACPPGTPGHPGLPGMK
GHKGVKGEGGEPGKQGHKGEEGDQGTTGDLGSQGPTGPQGIRGSTGMMGPKGGLGARGHD
GDPGPQGVEGATGDQGQRGVMGEFGPKGDEGSQGGRGITGLPGPKGKGGLSGVDGREGIP
GLPGGKGTIGKAGSPGEVGLQGLPGLPGSPGSKGTGGEKGSSGEAGLLGTIGSAGKTGEQ
GKVGGLGPIGPIGGPGDSGVQGPAGPPGKPGARGPKGDLGLPGVPGPPGLPGVKGERGEA
GEGGPKGEQGGQGSEGTSGDKGDVGDQGEAGPKGVVGNPGEPGNRGPEGSRGQPGIEGPA
GTSGPRGMQGNRGAPGIRGSQGPAGKEPSDQHIRQVCMRVMQEQLAQLAASLRRPESGAA
GLPGKPGPPGPAGPPGDSGFPGQAGARGLPGLKGPPGLLGLKGPKGELGDRGDRGPTVRG
AKGQPGPPGLPGEPGKPGYGQEGRDGERGPPGVPGQAGVPGPPGNAGPNGYCDPSSCNLR
PGDIDTSIKGPEGTRN
NT seq 2031 nt   +upstreamnt  +downstreamnt
atggctcacgggcaacttttttgggtacttttggtgcagattgtccttatttgctccaca
caaagggcctcgggccccgtcggccctccaggacccgcaggtgtcccaggaattgatggc
gtcgctggtgggaggggagacgacggagaggatggccctgctggtcctgatggagatgca
ggtaaactaggctcagccgggttgccaggtgtgcccggggctgatggtttgactggtcct
actggagacgaaggtcccgatggtccccttggacagaaaggtgaacccgggaaaccaggg
cctcgtggactagctggcgttggagacgatggaccccctggacccccggggccaggagga
cttccaggtgatttgggcaaaggtggaccccctggtgctatgggagtgagaggaccaaca
ggacctggtggatcagtagggccgagaggtgcagcagggatgcaggatttgagtgcagag
ctgtgccctggtgcctgtccacctgggacacctggtcatcccggcctccctggcatgaag
ggtcacaaaggagtaaaaggggaaggaggagagcctgggaaacaagggcacaagggtgaa
gagggtgaccagggaaccacaggggacctcggatcccagggcccgacgggtcctcaggga
atcagaggctccactggaatgatggggcccaaaggtggactgggagcacgaggacatgat
ggagatccaggtccccagggtgttgaaggagccactggtgaccaaggtcagaggggcgtg
atgggcgagtttggtcctaaaggtgatgagggatctcaaggtggaagaggaatcacaggt
cttcctgggcccaagggaaagggtggtttgtcaggagtggatggccgtgaaggtattcct
ggattgccaggtggaaagggcaccattggcaaggctgggtccccaggggaggtggggctt
cagggacttcctggattacctggttctcctggctctaaaggaactggtggagagaagggt
agctctggagaggcaggtcttcttggaacaataggatctgctggtaaaacaggagagcaa
ggcaaagtaggaggtctaggacccattggaccaattggtggaccgggagacagcggagta
caaggaccagccggtccaccgggcaaaccaggggccaggggacctaaaggagatcttggt
cttcctggtgttcccggacccccaggcctccccggagtgaagggagagaggggagaagct
ggtgagggaggacctaaaggggagcaggggggacaaggttctgagggaacctctggagac
aaaggagatgttggtgaccaaggggaagctggacccaaaggagtggttggaaacccagga
gagcctggtaacagagggccagagggtagcagagggcagcctggcatcgagggcccagct
ggtacttctggaccccgtggcatgcagggcaacaggggcgcaccaggaatcagggggtca
cagggaccggcgggtaaagaaccaagcgatcaacacatcagacaagtctgcatgagagtt
atgcaagagcagctagcccagttggctgccagtctaaggaggccggagtctggagcagcg
ggcctgcctggtaagccagggcctcctggtcctgccggacccccaggggacagtggcttc
cctgggcaggctggcgcaagaggactgcctggactcaaaggacctccaggactcctagga
ctcaaaggacccaaaggtgaattgggcgacagaggagaccgaggtcccacggtgcgaggg
gccaagggccagccaggacctcccggtctaccaggtgagcccggaaagcctggttacggc
caggagggacgtgacggcgagagaggacctccaggtgttcctggccaggctggtgtacct
gggcctcctggtaatgctggtcccaacggctactgcgacccatcgtcctgcaacctcaga
ccgggggacattgacaccagcatcaagggcccggagggaactagaaactag

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