Oncorhynchus kisutch (coho salmon): 109879506
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Entry
109879506 CDS
T09179
Name
(RefSeq) rho guanine nucleotide exchange factor 18-like
KO
K21066
A-kinase anchor protein 18
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
109879506
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
oki04131
]
109879506
Membrane trafficking [BR:
oki04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
109879506
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PH_16
RhoGEF
PH
C1_1
PH_13
SOS1_NGEF_PH
ATG1-like_MIT2
HemY_N
C1_2
Motif
Other DBs
NCBI-GeneID:
109879506
NCBI-ProteinID:
XP_031693884
LinkDB
All DBs
Position
LG13:7222194..7333773
Genome browser
AA seq
1518 aa
AA seq
DB search
MADSPLNNSWPSFSKLWMKRWSFKRGSEGKPCSTLQPCVSASEASSLSSSLSPASVAKDV
FFNTEEKDDESDYENPSLDEDVDSSVEDLLGLSCSFIDSNYYKDHQGAHSVSAAPETSPS
TLGFPSRYRDSPQHSSQLHPNPHPYPYPYQETENKSIPHHTIVVTQFNPNLLQSGSAMDG
YNSESVDPVGVVSTMVNLNGPGGQGDMMDSDRESFPILIRSMSTSRRHSLGMPMSPIDLG
RRLSLDAIDSDGERDDALLRSSHLQAFIYPGCPEQEVEESDGTDLSRSEAKETETEECSR
SGRTYSRTEILATDEHIHVAHVSHVVETSKRAAGEELDPEEPNLHTAEGQTHMLMIQKVL
QELKQYHGARQRTTRPEGKETGSSVTWYEFLSNENEEEEDRTEKVEKGTKVKRTLSSLRS
RMTGSFNKDKQGKNREKEQQKGKERELKEKEKLHHSSSSGHNLVPGSFSSCATCSLCSKA
LQKKHGLQCLNCAVNVHKSCRTLLAECNSSKNKKDSLHRTSTTASPILALRDRDQSSTAL
DCPSGSPRIPGMTLTPRGPSAQPASAAFNSSSSSHTAAASLSLNHSHNSHTGSLSGDMDE
PDSLRSGLKRFNEDAVSLAPSTTDSIVVEDAYYSAFRADLESDAQDLEVESWSLAVDQHY
LKKYTKETVKRQDVIYELMQTEMHHVRTLKIMLRVYMRELKEHLQMDELFPRLESLLELH
TSFLSRLKERRRDSTQPGSDRNYNIQRLADILTTQFSGEKGDRMKENYGDFCSHHTEAVS
YYKEQLHNNKKFQNLIRKVNNLSVVRRLGVTECILLVTQRITKYPVLVERIVQNTEVGTE
EHEELTRSLSLIKDCIVQVDAMVNLHEKASRLRDIAHKMEPKSLGKIKDGRVFHREDLSQ
GRRRLLHEGTANHKAASGRLKDIVAVLLSDVLLLLQDKDQRYVFSTVDNKPSVISLQKLI
VREVAHEERAMFLICASSNEPEMYEIHTASKEERNSWMTHIRQAVESCPHTEERLFSEQE
EARASRFNEFQERLSQKDSQIVTLLTEKLQLFSDMCLVSGNEDTTFRSRLMLRGDASDLH
QGETLLKGTITDVESLQNLLLSGVREPASRLEEGSGSGALPRRADTFGGYDSRPIILNKK
GIVKKKNHSGGDRARDETQKGCSDPQLTKIQASQTLEQPQVGQIYKHTPYTTVCNCVCNG
VVCVARWERERERHRLQAEVTEGMLRQREDDCRRLEEKLAEEREDLERQRETYQQDLERL
RESTRTVEKEKERLEQQRKIKRKTIEVMPFSGSLNGDLLLGVGSSCSVGSDLTLPQKALV
RSSPSVAPADYLERPELLARGQSANATVLPVKKEVPLHLCSTTNQQHKQVGVQQQIPTKL
AALSSKSSKSAKATHRTDSTASLDMKQMLPMKLSAKEDGTLKAKRSISPNQQLPHTLVHS
QSMHLTVSSSLPDRGPENQPAGLQKPPSQASNPLHIHTQPQAPNPLHTQSPNAPPAQAPV
HSHSLPPPCRIPEDVIFF
NT seq
4557 nt
NT seq
+upstream
nt +downstream
nt
atggcagattctcccttaaacaactcctggccttctttctccaaactctggatgaaacgt
tggtccttcaagagaggatcagaaggtaagccatgttctaccctgcagccctgtgtgagt
gcctcagaggcatcctccttgtcctcgtccctgtccccagcctccgtcgctaaggacgtc
ttcttcaacactgaggaaaaggatgatgaaagtgactatgagaacccaagcctggatgag
gatgtagacagcagtgtggaggatcttctgggtttaagctgctccttcatagactcaaac
tattacaaagaccatcaaggggcacactctgtatcggctgccccagaaaccagcccttct
accctgggctttcccagtagatatagagacagtccccaacacagctcccagctccatccc
aatccacatccctatccatatccctatcaagagactgaaaacaaatccataccccatcac
actattgtggtcacccagttcaaccctaacctgttgcagtcaggcagtgccatggatggc
tataacagtgagtcggtggaccctgtgggtgtggtgagcactatggtgaatctgaatgga
ccaggaggacaaggagacatgatggattctgacagagagagcttccctatcctgatcagg
tccatgtctacatcacgcagacatagcttgggcatgcccatgtctcccatcgacttgggg
aggaggctgagcctggatgccatagacagcgatggagagagggatgacgctctcctccgc
tcctcccacctacaggcttttatatacccaggatgccctgagcaggaagtggaggagtca
gatgggacagacctctccagatctgaagccaaggagacagaaacggaggagtgcagtcgg
tccggaaggacatactccagaacagagattctggccacagatgagcacattcacgtcgca
cacgtgtctcacgtagtggagacatcgaagagggcagcaggagaggagctggacccagag
gaacccaacttgcacactgcagaaggacagactcatatgctgatgatacaaaaagttctg
caagagctcaagcagtaccacggagccaggcagaggaccacaaggccagaggggaaggag
actggaagtagtgtcacctggtatgaatttctctccaacgaaaatgaggaagaagaggac
cgaacagagaaagtggaaaaggggaccaaagtgaagcgcaccctgagctcgcttaggagc
agaatgactggctcattcaacaaagacaagcagggtaagaaccgagagaaagagcagcag
aaggggaaggagagggaactcaaagagaaagagaaactgcatcacagtagtagcagtggg
cataatttggtgccaggctccttctccagctgtgccacctgctcactgtgcagtaaggcc
ctgcagaaaaagcatggtctgcagtgcctgaactgtgcagtgaacgttcacaagagttgt
cggacgctactagctgagtgtaacagcagcaagaacaagaaggattctctgcataggacc
tccacaacagcgtcgccgatcctcgccctgagggatcgggaccagtcttctacggccctt
gattgcccctccggttctccgcgcatcccaggcatgaccctcaccccgcggggacccagt
gctcagcctgcctcagccgccttcaacagctcttcctccagccatactgctgcagccagc
ctcagcctcaaccacagccacaacagccacaccggatccctctcaggggacatggacgaa
ccggacagcctacgctccgggctcaagcgcttcaatgaggacgccgtctccctggcccca
tccaccactgactccatcgttgtagaagatgcatactactctgcatttcgagctgatctg
gagtctgatgcccaggacctggaggtggagtcatggagtctggctgtggaccagcactac
ctgaagaaatacaccaaggagacggtcaagagacaagacgttatctacgagctgatgcag
acagagatgcaccacgtacggaccctgaagatcatgctgcgtgtttacatgagggagctg
aaggagcacctccagatggacgagctgttcccgcgcctagagagcctgctggagctgcac
acaagcttcctgtcccgcttaaaagagcggcgccgagactccacgcagcccggcagcgac
aggaactacaacatacagagactcgctgacatcctcaccacacagttttcaggtgagaaa
ggggatcggatgaaggagaactatggtgatttctgcagccaccacaccgaggctgtcagc
tactacaaggagcaactacacaacaacaagaagttccagaacctcatacggaaagtcaat
aatttgtccgttgtgagaagattaggagtgactgagtgtatcctcctggtgacacaacgc
atcaccaagtaccctgtgctggtggaacgtattgtgcagaatacagaagtgggtacggag
gaacacgaggagttgaccaggtctcttagtctgattaaagactgcatcgtccaggtggat
gccatggtcaacctgcatgagaaggcctcgcgactccgagacatcgcccacaagatggag
cccaagtccctcggcaagatcaaagatggccgtgtgttccacagagaggacctgtcccag
ggtcgacgcaggctgctgcacgaggggacggccaaccacaaggccgcctccggaagactc
aaagatattgtggctgtgctgctgtccgacgtgcttttgttactccaggacaaggaccag
agatatgttttctccacagtggacaacaagccctcagtgatctccctccagaagttgata
gtaagggaggtggcccacgaggagagggccatgttcctgatctgcgcctcctccaatgag
ccggagatgtacgagatccacaccgcctccaaggaggagcgtaactcctggatgacacac
atccggcaggccgtggagagttgtccacacactgaggagagactcttcagtgagcaggag
gaggctcgagcctccagattcaacgagttccaagagcgtctgagccagaaggactcccag
atcgtgacgttgctgacagagaagctgcagctgttttcagacatgtgtctggtgtctggt
aacgaggatacgacctttcgctcccgcctaatgctgcgaggtgacgcctcagacctccac
cagggggagacactgctcaaggggaccatcactgatgtggagagtcttcagaacctgttg
ctgtctggtgtgagagagccagcttctcgtctagaggagggttcaggatccggggctctg
cccaggagagcagacaccttcgggggctatgacagcaggcccatcatcctcaacaagaaa
ggcattgtgaagaagaagaaccacagtggaggggacagggccagagacgagacccagaaa
ggctgctctgacccccagcttacgaagatccaggctagtcagaccttggagcagccacag
gtgggtcaaatatacaaacacacaccctacacaacagtgtgtaattgtgtgtgtaatggg
gttgtgtgtgtggctcgctgggagagagagcgggagcgccacaggctgcaggccgaggtc
acagaagggatgctgaggcagagagaggacgactgcaggaggctggaggagaagctggcg
gaagagagggaggacctggagagacagagagagacgtaccaacaggatctggagagactg
agggagtcgacccgcacagtggagaaggagaaggaacgcctggagcagcagaggaagatc
aagaggaagaccattgaggtgatgcccttctctggcagtctaaatggggatctcctgctg
ggcgtgggcagtagctgcagcgtcggatcagacctcaccctcccccagaaggccctggtt
cgttccagcccttctgtggcgcccgcagactacctggagcgtcctgagcttctggctcgg
ggtcagagcgccaacgccacggtgctgccggtgaagaaggaggtgcccctccacctgtgc
agcaccaccaaccagcagcacaagcaggtgggtgtccagcagcagatccccaccaagctg
gcagccctgagctcaaagagttcgaagagtgccaaggccacccaccgcaccgacagcaca
gcctctctggatatgaagcaaatgctgcctatgaagttgtcagccaaagaggacggcact
ctgaaagccaagcgctccatcagccctaaccagcagcttcctcacaccctagtccactcc
cagtccatgcacttgacagtttcatcgagccttccagacagggggccagagaaccagccc
gccggcctacagaagccccccagccaggcctccaaccccctgcacattcacacccagccc
caggctcctaaccccctccatacccagagccctaacgcccctccagcacaggcccctgtc
cacagccacagcctgccccctccatgcaggatccctgaggatgtaatcttcttctga
DBGET
integrated database retrieval system
