Oncorhynchus kisutch (coho salmon): 109885007
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Entry
109885007 CDS
T09179
Name
(RefSeq) collagen alpha-2(VI) chain-like isoform X1
KO
K06238
collagen type VI alpha
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki04510
Focal adhesion
oki04512
ECM-receptor interaction
oki04518
Integrin signaling
oki04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
109885007
04518 Integrin signaling
109885007
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
109885007
09142 Cell motility
04820 Cytoskeleton in muscle cells
109885007
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
oki04147
]
109885007
00536 Glycosaminoglycan binding proteins [BR:
oki00536
]
109885007
Exosome [BR:
oki04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
109885007
Glycosaminoglycan binding proteins [BR:
oki00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
109885007
Hyaluronan
Extracellular matrix or blood plasma proteins
109885007
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
Motif
Other DBs
NCBI-GeneID:
109885007
NCBI-ProteinID:
XP_031666083
Ensembl:
ENSOKIG00005032823
LinkDB
All DBs
Position
LG30:48443478..48500160
Genome browser
AA seq
1013 aa
AA seq
DB search
MMMRSEVIALCFLFGSAAHAQAVPECNKKHECPIDVYFTIDTSETIALQEPPPGSLVESI
KMFTERFAERLEDADYKGLVQIRWQLGGLHFSQRQQVFSRIQAKDAFIQGLRNIRYLGKG
TYIDCALANMTQEMTRLPSNPGALRFAVVITDGHVTGNPCGGVKVTAERARDEGIRMFVV
AATKNVDETGLREIANSPANVYRKDFLAVDLSGNRPVIQLDTIDRIIKTMTHLAYQECYK
VKCLETDGPPGPEGHRGQKGAKGDNGNPGPKGDRGRQGDPGIEGPIGHPGVKGEIGIKGE
KGEIGAEGTKGVAGLAGRNGTDGQKGKIGRIGAPGCKGDPGDRGPDGHPGDAGDGGLPGT
DGEKGDPGRSGRAGPLGPVGDSGPKGERGSAGTPGFPGNKGTPGTAGGPGVNGELGRRGD
FGPMGTPGTDGVKGDKGEAGPEGLRGLPGEVGNKGTKGDNGLPGPRGLPGTSGAAGKNGT
RGDPGDAGPRGDPGLPGLKGDVGRAGFSYPGPRGPTGDRGEKGGPGPRGGRGDCGPKGGP
GGKGTSGEEGEPGPQGEPGFRGPRGVGGRDGDPGPEGDPGLTECDVMNYIRETCGCCDCE
KRCGALDIVFVIDSSESVGLTNFTLEKNFVINTINRLGSMAKDPNSETGTRVGVVQYSHS
GTFQAIRLNDSKIDSLSAFKDAVKRLEWIAGGTWTPSALKYAYDHLIKDSRRAKANVTVV
VITDGRFDPRDDDSLLTYLCSDPSVDVSAIGIGDMFDQIEENESLKSIACQRDGRVLGMR
RFADLVAEEFIDKIETVLCPDPVIVCPDLPCKTEPAVASCVQRPVDLVFMLDGSERMGVE
NHRRAKEFIENVARRLTLANGQSDDRNARIALLQYGSKSEQKVEFSLTHNLTVIADSLAG
MSYMDSASSLGSAIIHAVNNLVMSQGSRLARRNAELSFVFITDGITASESLEEGVSAMRR
AEGVPTVIAMGTDTDQDVLRKVALGDTSAIFRGEDYATLGKPTFLERFIRWVC
NT seq
3042 nt
NT seq
+upstream
nt +downstream
nt
atgatgatgaggtccgaggtcatcgcgctgtgcttcctgttcggatctgcggcacatgca
caggccgtcccagaatgcaacaagaaacatgagtgtcctatagatgtgtactttacaatc
gacacatctgagaccatcgccctgcaagaacctccccctggatcactggtggagagcatt
aagatgtttacagagcgttttgcggagcgtctggaggatgctgactataaaggtctggtc
cagatcagatggcagttaggaggactacacttctcccagagacaacaggtcttcagccgt
atacaggccaaggacgccttcatccagggtttgaggaatatccggtacctgggtaaggga
acctacatcgactgcgccctcgctaacatgacacaggaaatgacacgtttgccctctaac
cccggagcgctgcgattcgctgtcgtcattaccgacggtcacgtgacaggaaacccctgc
ggtggagtgaaggtgacggccgagcgtgcgcgcgacgagggcatcaggatgtttgtggtc
gctgccacgaagaacgtggacgagacagggctgagggagatcgctaactctccggccaac
gtctacagaaaagacttcctggctgtcgacctcagtggcaacaggcctgttatacagctg
gacactatagaccgcatcatcaagaccatgacccatctggcctatcaggagtgctacaag
gtgaagtgtctggagacagatggaccccctggacctgaaggacacagaggacagaaggga
gctaaaggagacaacggcaaccccggtcctaaaggcgataggggaagacagggcgacccg
ggcatcgagggtcccatcggtcacccaggagtcaagggtgaaataggtatcaaaggtgaa
aagggggagatcggagctgaggggacgaagggtgtggccggcctcgctggacgcaacggg
acagacggacagaaggggaagatcggacgcatcggcgctcccggctgcaaaggagatcca
ggagacaggggtcctgatggtcacccaggagacgcgggcgacggtggtcttcctggaacg
gatggagagaagggagatcccggtcgctcaggaagagcaggccccctcggcccggtggga
gactctggacctaagggtgagagagggagtgctggcacacctggcttcccaggaaacaaa
ggaacgccaggaaccgctggaggcccgggagtcaatggagaactggggagaagaggagac
tttgggccaatggggaccccgggaacagacggagttaaaggagacaagggcgaggcagga
cctgaggggctgagaggactaccaggtgaagtaggaaacaaaggaaccaagggagacaac
ggactcccggggccacgcgggctccccggtacttcaggagcggcagggaagaacggtacc
cgtggcgaccctggtgatgctggacccagaggagaccccggccttccaggactaaagggt
gacgttggaagagctggcttcagttacccaggaccaagaggaccaacgggagatcgcggg
gagaagggaggcccagggcccagaggaggcagaggagactgtggccccaagggaggacca
gggggaaagggaacctctggagaagagggagaaccagggcctcagggagaacctggattc
agaggaccaagaggagtgggtggacgagatggagatccaggtcccgagggagaccccggc
ctcacagaatgtgatgtcatgaactacatcagagagacctgcggctgctgtgactgtgag
aagcggtgtggggcgctggacatcgtgtttgtgattgacagctcagagtcagtgggtctg
accaattttactctggagaagaactttgtgatcaacaccatcaacagactgggatccatg
gccaaggaccccaactcagagacaggtaccagagtgggggtggtccagtacagtcacagt
ggaaccttccaggccatcaggctcaatgactccaagatcgactcactgtctgccttcaag
gatgcggtaaagcgtctggaatggatagccggggggacgtggaccccatcagcgctgaaa
tacgcctacgaccacctgatcaaagacagtcgcagagctaaagccaacgtcaccgtggtg
gtcatcacagacggacggtttgaccccagggacgacgactcactgctcacatacctctgc
agcgaccccagtgtggacgtgagcgctataggtataggggacatgtttgaccagatagag
gagaatgagagcctgaagagtatagcctgtcagagagacggtagggtgctggggatgagg
cgcttcgctgatctggtggcagaggagttcatcgacaagatcgagaccgtgctctgccca
gatcctgtcatcgtgtgtcctgacctcccctgtaaaactgagccagcggtggccagctgt
gtccagcgccctgtggaccttgtgttcatgctggacgggtcagagaggatgggagtggag
aaccaccgccgagccaaggagttcatcgagaacgtggcgcgccgcctcaccctggccaac
ggccaatcagatgacaggaacgcccgcatcgccctgctgcagtacggcagcaaatcagaa
cagaaggttgagttttcactcacgcacaatctgacggtgatcgctgattcgctggctggg
atgagctacatggactccgcctcctctctgggcagcgccatcatacacgctgtcaacaac
ctggtgatgtcacagggcagccgtctggcgcgtcgaaacgcagaactgtcttttgtcttc
attaccgacggaatcactgccagcgaaagcctggaggagggcgtgtcggccatgcggcgg
gctgagggtgttcccacggtgatcgccatggggaccgacacggaccaggacgtgctgagg
aaggttgctctgggagacacgtcagccatctttagaggagaggactacgccacgctgggg
aaacccacattcctagaacgcttcatccgctgggtctgctaa
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integrated database retrieval system
