Oncorhynchus kisutch (coho salmon): 109885052
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Entry
109885052 CDS
T09179
Name
(RefSeq) LOW QUALITY PROTEIN: voltage-dependent L-type calcium channel subunit alpha-1F-like
KO
K04857
voltage-dependent calcium channel L type alpha-1S
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki04010
MAPK signaling pathway
oki04020
Calcium signaling pathway
oki04260
Cardiac muscle contraction
oki04261
Adrenergic signaling in cardiomyocytes
oki04270
Vascular smooth muscle contraction
oki04912
GnRH signaling pathway
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
109885052
04020 Calcium signaling pathway
109885052
09150 Organismal Systems
09152 Endocrine system
04912 GnRH signaling pathway
109885052
09153 Circulatory system
04260 Cardiac muscle contraction
109885052
04261 Adrenergic signaling in cardiomyocytes
109885052
04270 Vascular smooth muscle contraction
109885052
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
oki04040
]
109885052
Ion channels [BR:
oki04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
109885052
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
CAC1F_C
Ca_chan_IQ
GPHH
PKD_channel
Motif
Other DBs
NCBI-GeneID:
109885052
NCBI-ProteinID:
XP_031649219
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Position
LG17:85154882..85302870
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AA seq
1573 aa
AA seq
DB search
MYEDNRKNNGRNGYTNTDEGEEGGGEGEEGEEEEEEEEEGGEGDEGGETKGDAEWTEDSM
AENGGVKMTRTDTLHSTTSSTGTQRKKSHHNKKVVQGSDKVQRAPRALYCLKLNNPIRRA
ALSIVEWKPFDIFILIAIFANCIALGVSKPFPEEDSNSTNHDLEQVEYVFLIIFTIETFL
KILAYGLVMHPSSYIRNGWNLLDFVIVIVGLFSVVLETMTHKATGEAASTHHVPGKPGGL
DVKALRAFRVLRPLRLVSGVPSLQIVLNSIMKAMLPLLHIALLVLFVIIIYAIIGLELFI
GRMHKSCYYIGTDNYAEDDPVPCAFAGHGRQCVVNGSECRGKWAGPNGGITNFDNFFFAM
LTVFQCITMEGWTDVLYWMNDAIGFEMPWVYFVSLVVFGSFFVLNLVLGVLSGEFSKERE
KAQARGDFQKLREKQQMEEDLSGYMDWITQAEDMDEFDEDGNRLATLGDLSDKKKGKFGW
FSHSNDTHGRHSPTRFCCSLFTVEMLLKMYALGSQTGYFKAFFNRFDFFVVCGGITETTL
VELEIMPPLGISVLRCVRLLRIFKVTRHWTALSNLVASLLNSMKSIMSLLLLLFLFLIIF
ALLGMQLFGGKFNFDETQTKRSTFDTFSQALLTCFQILTGEDWNLVMYDGIMAYGGPVFP
GMIICIYFVILFICGNYILLNVFLAIAVDNLAGGDGDTKKEEKKEEGEAKEGEGENGELK
IDVDDETEYEEEEEPEQTEEAAVGIQLNVADILPPKEKVTPIPEGSAFFCLSKTNPIRRG
CHFLIHHHIFCNLILVFIILSSCSLAAEDPIRAHSFRNNVLGYADYAFTSIFTVEIILKM
TVHGAFLHQGSFCRNWFNLLDLLVVSVSLISFFLHSSAISVVQDSQGTQSTQIINLFVAV
IMDNFDYLTRDWSILGPHHLDEFKRIWSEYDPEAKGRIKHLDVVALLRRIQPPLGFGKLC
PHRVACKRLVAMNMPLNSDGTVTFNATLFALVRTALKIKTEGNPDQENEELRTIIKKIWK
RMKPKVLDEVIPPHEEEDVTVGKFYATFLIQDYFRKFRKRKEQGDLEEGDPNNTSAALQL
CQAGLRTLQDLGPEMRMAMSADLEEEEEEGMEEEPEEDDSPYKTDNGYAPEGKDRRGSMV
TTLTGGGGMPRESLSNGGLAHRGSTSFSKTPNGGGLEQDELRRGDNMRSSLNHHHRHSSI
KNGLVDQPAMSRRNSNKYSRRDSRGDRYSPVRGRNGGMDGGEESYGGEEGYYDEDNESLD
PRDRLRYPDDPPLYPGQHDHMYDAHGPSNAAYGNNYGNGNGNGYGDGRRTARRRLLPATP
TGRKPSFNIQCLRRQDSNDDLPIPGTYHQNSPPCRARTQVTTQTYGSYESRRSSSRSSTG
SSASWANPCPRRGRLLYAPLILVEEEGAGGGGGSGIWGDKTGGGANVTAATSRPGPAGWY
TGPPCPSGGSQAPYRAYTTLRVPTQLSPHYSDKRGSADSLVEAVLISEGLGLYAKDPKFV
AFAKREIADACHMTIDEMESAASDLLSRRSRGGGGDGFLNNPDLGTLYSDEEPIRTGRDE
EDLADEMTCVTSF
NT seq
4722 nt
NT seq
+upstream
nt +downstream
nt
atgtatgaggacaatcgcaaaaacaatggccggaacgggtacaccaacacagacgaagga
gaggagggtggaggagagggagaagagggagaagaggaggaggaggaggaggaggaggga
ggagagggggatgagggaggggagacgaaaggagacgcggagtggacggaggacagtatg
gccgaaaacggaggagtgaagatgacgaggacggacacactccattctacgaccagttcc
acggggacccagaggaagaagagccatcataataagaaagtggtacagggttctgacaag
gtccagagagcgcccagagccctttactgcctcaaactcaacaaccccatacgcagggcc
gcgctctccattgtagagtggaaaccctttgacatcttcatcctgatagccatctttgct
aactgtatagcgctgggggtgtccaagcctttccctgaggaagactccaactctaccaac
cacgatctggaacaagtggaatatgtgtttctgattatcttcaccatcgagaccttcctg
aagatcttggcttacggcttagtgatgcaccccagctcctacattcgcaacggatggaac
ctgctggactttgtcattgtcatcgtcgggctgttcagtgtcgtcctggagacgatgacc
cataaggccactggggaggctgcgtcgacccaccatgtgccagggaagcctggaggtctg
gacgtcaaagctctccgagccttcagagtactgaggcccctacggctggtctcaggagta
cctagtcttcagatcgtattgaactccatcatgaaggccatgctgcctctgctccacatc
gccctgctggtcctgtttgtcatcatcatctatgccatcatcggcctcgagctgttcata
ggacggatgcataaatcctgctactacatcggcacagacaactatgcagaggatgaccct
gtgccctgtgcgtttgcgggtcacggccgtcagtgtgtagtgaacgggtctgagtgtcga
ggaaagtgggctggacccaacggaggaatcaccaactttgacaatttcttcttcgctatg
ctgacggtgttccagtgtatcactatggaggggtggaccgacgttctctactggatgaat
gatgccatcgggtttgagatgccctgggtttactttgtcagtctggtggtttttggctcc
ttcttcgtcctcaacctggttttgggtgtgttgagtggagagttctccaaggagagagag
aaggcccaggcgcgaggggacttccagaagctgagggagaagcagcagatggaggaggac
ctgtctggatacatggactggatcacacaggctgaggacatggatgagtttgacgaggat
ggaaacagacttgcgaccctgggggatctgtcagacaagaagaaagggaagtttggctgg
ttcagtcactcaaacgacacacacggtagacatagcccaacaaggttctgctgttctctg
tttacggtggagatgctgttgaagatgtacgctctgggatctcagaccggctacttcaaa
gcctttttcaaccgtttcgacttcttcgtggtgtgtggaggcatcacggagaccactctg
gtggagctggagatcatgccgcctctcggcatctccgtgcttcgctgtgtccgactcctc
aggatatttaaagtgacacgtcactggacagctctgtccaacctggtggcctctctgctc
aactcgatgaagtctatcatgtcccttctcctcctgctgttccttttcctgatcatcttc
gctctgctgggcatgcagctgttcggagggaagttcaatttcgacgagacccagaccaag
aggagcaccttcgacaccttctcccaagccctgcttacctgcttccagattctaacaggt
gaggactggaacttagtgatgtacgacggcatcatggcgtacggagggcccgtcttccct
ggcatgatcatctgtatctactttgtcatcctcttcatctgtggtaactatatcctgctg
aacgtcttcttggctatcgctgtggacaacttagcaggaggagacggcgacacgaagaaa
gaagagaagaaagaagagggggaagcgaaggaaggggagggagagaatggagaactgaag
attgacgttgatgatgagactgagtatgaggaagaggaggagcctgaacagacagaagag
gcagcagtaggcatccagctgaacgtagcagacatcctccctcccaaggagaaggttaca
ccaatcccagagggcagcgccttcttctgtctcagcaagaccaacccgatccgtcggggt
tgccacttcctgatccaccaccacatcttctgcaatctcatcctggtcttcatcatcctc
agcagctgctctttggccgcagaggatcccatcagagcacactcctttaggaacaatgtt
ctgggctatgcagactatgccttcacctctatattcacagtggagattatactgaagatg
acggttcatggagcattcctccatcaaggttcattctgtaggaactggttcaatctgttg
gatctcctggtggtctctgtgtctctgatctccttcttcctacattcgagtgccatctct
gtggttcaagattctcagggtactcagagtactcagattatcaacctgtttgttgctgtc
atcatggacaactttgactatctaacccgtgattggtccattctggggcctcatcacctg
gatgagttcaagaggatctggtcggagtacgaccctgaggccaagggtcgtattaaacat
ctagatgtcgtagctctgttgcgaaggatccagcctcctctgggcttcggaaagctctgt
cctcaccgcgtggcgtgcaagcgtctggtggccatgaacatgcctctgaacagcgacgga
accgtaaccttcaacgccactctgttcgccctggtcagaactgccctgaagatcaaaacg
gagggtaacccggaccaggagaacgaggagttgaggaccataataaagaagatctggaaa
aggatgaagcccaaggttctggacgaggtcatccccccacacgaggaagaggatgtgacg
gttggtaagttctacgcgaccttcctgattcaggactacttcaggaagttcaggaagaga
aaagagcaaggagatctggaagagggcgacccaaacaatacctctgctgctctacagctg
tgtcaggcgggtctgcgtaccctgcaggacctggggccagagatgaggatggccatgtca
gctgacctggaagaggaagaggaagagggcatggaggaagagccagaggaagatgattct
ccctataagactgataatggctatgcccctgagggtaaggacagacgtggctccatggtc
accacccttactggaggaggaggtatgcccagggagagtctctccaacgggggtctggcc
caccgaggttccacctccttctccaagacccccaacggaggaggcctggagcaggatgag
ctgagacgaggagacaacatgaggtcctcgctcaaccatcatcatcgtcattcttccatt
aagaacggactggtggaccaaccggccatgagcagaaggaattctaacaagtattcaaga
agagacagcagaggagacaggtattctcctgtccgaggtcgtaacggagggatggatgga
ggagaggagagttacggaggagaggagggttactacgatgaggataacgagagccttgat
cctcgtgacagacttcgttaccctgacgaccctcctctgtaccctggtcagcatgaccac
atgtacgacgcccacggccccagcaacgctgcctacggtaataactatggtaacggcaac
gggaacggctatggagatggacggaggaccgcgaggagacgcctcctccccgccacacct
accggtcgtaagccatcctttaatatccaatgtctgaggaggcaggacagcaatgatgac
ctccccatcccaggaacctaccaccagaactctcccccctgccgggcacgcacacaggtc
actacacagacgtacggcagttacgagtcccgtcgcagcagcagccgttcctcaacaggt
tcctctgcctcctgggccaacccttgccctcgccgaggtcgcctcctctatgcccctctc
atcctggtcgaagaggagggggcggggggcggcggcggctccgggatctggggggacaag
acgggtggaggggccaatgtgacggctgccacctcccgacctggccctgcggggtggtac
acggggcccccttgtccctcaggaggttcccaggcaccatacagggcctataccacacta
agggtccccactcagctcagccctcactacagcgacaagagaggcagcgctgacagcctg
gtagaagcagtgctgatctcagaggggctgggtctgtatgccaaggatcccaagtttgtg
gccttcgccaaacgggagattgctgatgcgtgtcacatgacaattgacgagatggagagt
gcggccagcgacctgctgagtcggagaagcaggggcggagggggtgacggtttcctgaac
aatcccgaccttggaaccctgtacagcgacgaggagccaatcagaacgggccgcgacgag
gaagacctggcagacgagatgacctgcgtcacttccttctga
DBGET
integrated database retrieval system
