Oncorhynchus kisutch (coho salmon): 109889136
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Entry
109889136 CDS
T09179
Name
(RefSeq) phospholipid-transporting ATPase ABCA1 isoform X2
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki02010
ABC transporters
oki04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
109889136
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
109889136
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
oki02000
]
109889136
Transporters [BR:
oki02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
109889136
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
AAA_23
Motif
Other DBs
NCBI-GeneID:
109889136
NCBI-ProteinID:
XP_020335932
Ensembl:
ENSOKIG00005034976
LinkDB
All DBs
Position
LG4:16890318..16936197
Genome browser
AA seq
2338 aa
AA seq
DB search
MGIGTQLLLLLWKNITYRRRNKVQLIIELVWPLFLFLILISVRHSHPPYKQSQCHFPNKA
LPSAGTLPWVQGIICNINNPCFHNPTQGETPGRVGNFDNSILSRLLVDSQTILSYSGNQT
AFSGFQDLLDTIRRLGERPGAWPNLPVGEYLRANQTFSNFLLTNGSLSPSALDQLFRARL
NFQVVSLAGTGVMLKDIVCNATVLSQFLTVDQEDSMAELQSQLCAIPADTLQQAEQLFLS
QLDFSKFFTRDRLRANAGDLRVISQAVTSVSKELAVLMDDLSSLASFRELNSELRLLSPE
NRSTLPRESFRAFSRIMCGHPEVGGERIPSLNWYEDNDIKSFLGKNGTEDNDMDKDNVTT
PYCKSLIQSLESNPLSRIVWRGIKPLFIGKLLYTPDTPAVRDVMKEVNKTFQDLQVLEEL
NGAWMEVAPGIKTYMESSVEIQLLQDLLRRPEVAVLVNLQLENTSWTAKRIARFLSTPNE
PRKEGAPLTWLDVYSDLNNTITTLAQVTQCFSLNKLEGAATEGQMIDRALELLEEREFWA
GIVFLLPNTSLPGLPPHVTYKIRMDIDDVARTNKIKDRFWDPGPAADPFSDMRYIWGGFV
YVQDLVERAVARVLSGVEQSTGLYIQQMPYPCYVDDVFLRVLNRSLPLFMTLAWIYSVAM
IIKGVVYEKEARLKETMRIMGLGTGQLWVSWFISSLVPFLVSAGLLIALLKWGDILPYSN
PAVVFFFLTAFATATIMQCFLISTFFSRANLAAACGGLIYFALYLPYVLCVAWRDHLTTT
HRVLASLFSPVAFGFGCEYFSQYEEQGVGIQWFNLHSSPMEGDTYNFTTSIIMLHIDACI
YALATWYIEAVFPGEYGVPRPWNFVFSLNYWGGIPLEAGMPIPPAPRGQGGDRIEADPSH
LILGVAIRNLVKIYKQGAKLAVNHLNLKFYEGQITSFLGHNGAGKTTTMSILTGLFPPTA
GTVYIKGMDIRTDMDIIRKTLGVCPQHNVLFDILTVEEHVWFYGRLKGLSGDEVRKELDT
LLEDVGLLHKRHEQTRNLSGGMQRKLSVAIAFVGGSKVVVLDEPTAGVDPYSRRGIWDLL
LKYRKDRTIILSTHYMDEADLLGDRIAIISQGKLCCCGSPLFLKAKLGTGYYLTVVKKEG
LDTRTPSSASATKLPPATKDSDSSMSDDTGLGSDVSGSDLAALLTLAQRHIPGARLVEDV
GREAVINLPQKSAEDSSLAIFLTEVDRRQADLGITSYGLSDTTLEEIFLRVAEETGVDVD
PEDSPGQADTPHGQGQSQGLSGEPSEDPEPQETDLLSGDGHGGVPLTGWGLTWQQLRALF
IKRWLYALRSRRGFFAQIVLPAVFVLIALLFSLIVPPFGKYPSLQLQPWMYGEQYTFFSN
DAPGDPAIQNLLDALLDRPGFGTKCMENSTDPQCLQEEEGMFMRPQILYSTWQLFNRGNW
TADKPSPDCECSSEEVRRMLPDCPEGAGGIPPPQVQRLTGDILQNMTGRNISDYLVKTYP
QIMKKSLTSATKKWINEFRYGGFSLGGRGTQAVPQAYQMEHSVMSIRSRYKVAQNSSLDQ
LLGRLPEFLGGLNSQNNVKVWYNNKGWHAMASFVNVMNNGLLRASLPPGPERMKYGITAY
NHPLNLTKEQLTEIAMMTTSVDVLVSICVIFSMSFVPASFVLFLIEERVSKAKHLQFVSG
VRPILYWLANFTWDMLNYTVPATMVVLIFICFQQQSYVSETNLPALVLLLLLYGWSITPL
MYPASFLFSVPSTAYVVLTSINLFIGINGSIATFVLELFVDQHLNDINKILKKVFLIFPH
FCLGRGLIDMAKNQAMLDAFQRLGAKQTLDPLEWDFVGKNLFAMAVEGVVFFLFTILLQY
KFFVNCRPCSEPELPPLGPEDEDIARERERVKSGKAQADILTMMDLSKVYKAGKKPAVDR
LCLGIPRGECFGLLGVNGAGKTSTFRMLTGDTAITYGEAFLSHHSVLTEMERVHQLMGYC
PQFDAICDLLTGREHLEFYARLRGVPEESVAKVAQWGVKKLGLTQYAEREAGGYSGGNKR
KLSTAISLIGAPPVIFLDEPTTGMDPKAKRFLWNCILSVIKEGRAVVLTSHSMEECEALC
TRMAIMVNGRFQCLGSVQHLKNRFGDGYTIVLRLSGTKPPEDPCTVDTYIKGSFPGIELK
ERHQNVLQYQLPSHSCSLARVFDVLSNNHEELGIADYSVSQTTLDQVFVNFAKEQSDDDL
LREVTVNGGTPAPQPRRAAQPTQPGQTAKPAQTTKPPQSVKSSDGRPRETKPNGVPDSGM
AMTSRPQEKPQSSRRELSSRRSSKESSANGSKGTRETSGSKDPTSLFLVGSSTQDSSV
NT seq
7017 nt
NT seq
+upstream
nt +downstream
nt
atggggatcgggactcagctcttgctcctgctctggaagaacatcacttaccgcaggagg
aacaaggtccagttgattatcgagctggtctggcctctgttcctcttcctcatcctcatc
tcagtgcgtcactctcatcctccctacaaacagagccaatgtcatttccccaacaaggca
cttccctcagcaggcactctgccatgggttcaagggatcatctgcaacatcaacaacccc
tgtttccacaaccccactcagggggagaccccagggcgggtgggcaactttgacaactcc
atactctctcgactcttagtggactcccagacaatcctgtcctacagtggcaaccagaca
gccttttctggctttcaggaccttctagatactatacggagacttggagagaggccaggc
gcctggccaaatcttcctgtgggagaatacctgcgagccaatcagaccttctccaacttt
ctcctgaccaatggcagcctgtctccctctgccctagaccagctgttcagggctcgcctg
aactttcaggtggtgtctctggcaggcactggggtgatgctgaaggacattgtgtgcaat
gccactgtgctgagccagttcctcactgtagatcaagaggattctatggcagagctgcag
agccagctctgtgccatcccagccgacaccctgcagcaagcagagcagctcttcctctcc
cagctggacttcagcaagttcttcacgagagacagactgagggccaacgccggtgatctc
cgggtcatcagtcaagcggtcacctccgtgtccaaggagttggcagtactcatggatgac
ctgtcctctcttgctagctttagggagttgaactcggagctgcgtctgctctcgccagag
aaccgttcgaccctgccgcgggagagcttcagggccttctccaggattatgtgtggccac
cctgaggtgggcggcgagaggatcccttcactcaactggtacgaggacaatgacatcaag
tcattcctgggcaagaacggcaccgaggacaacgacatggacaaggacaacgtcaccacc
ccgtactgtaaaagcttgatccagagcctggagtccaacccattgtctcgcatcgtgtgg
agaggtatcaagcccctgttcattggcaaactgctgtatacaccggacacccctgccgta
cgcgacgtcatgaaagaggtgaacaagaccttccaggacctgcaggtcctagaggagctg
aatggtgcctggatggaggtggcacctggtatcaagacctacatggagagtagtgtggag
atacagctgctgcaggatctgctgaggcgaccggaggtggctgtgttggttaatctgcag
ctggagaacacttcctggacagccaagcgcattgcccgcttcctgtccacgcccaatgaa
cccaggaaagaaggagcgccccttacctggctggacgtgtactccgacttgaacaacacc
atcaccactctggctcaagttacccagtgtttctccctgaacaagctggagggtgctgcc
acagagggacagatgattgacagggccttggagctgctggaggagagagagttctgggct
gggatagtgttcctccttcccaacacgtctttacccggtcttccccctcatgtcacctac
aagatccgcatggacatcgacgatgttgcacgcaccaacaagatcaaggacaggttctgg
gacccgggcccagcagcggaccccttcagtgacatgcgctacatctgggggggctttgtg
tacgtacaggacctggtggagagggctgtggcccgtgtgctgagtggtgtggagcagtcc
actggcctctacatccagcagatgccctacccctgctacgtggatgacgttttcctacgc
gtgctgaaccgctcgctgcccctgttcatgacgctggcatggatctactcggtggccatg
atcatcaagggcgtggtgtacgaaaaggaggcgcggctcaaggagaccatgaggatcatg
gggcttggtacaggccagctgtgggtcagctggttcatcagcagcctggtgcccttcctg
gtcagcgccggcctcctcattgctctgctcaagtggggggacatcctgccctacagcaac
ccggctgtggtgttcttcttcctgacggccttcgctacggccaccatcatgcagtgtttc
ctcatcagcaccttcttctcccgggccaacctggcagccgcctgcggaggcctcatctac
ttcgccctctacctgccctatgtgctgtgtgtggcctggagagaccacctcaccaccaca
catcgtgtcctagcaagcctgttttctcctgtggcctttggctttggctgtgagtatttc
tcccagtacgaggaacaaggagtgggcatccagtggttcaacctgcactccagccccatg
gagggagacacctacaatttcaccacttccataatcatgttgcatatcgatgcatgtatc
tacgctctggccacctggtacattgaagctgttttcccaggtgaatatggggtccccagg
ccatggaacttcgtgttcagtttgaactattggggaggaattcctctagaggccggcatg
cccatccctccggctcccagaggacagggaggagatcgcatcgaagccgacccctctcac
ctcatactcggtgtggccatccgcaacctggtcaaaatctacaaacaaggtgccaagctg
gcggtcaaccacctcaatctcaagttctatgaagggcagatcacctctttccttgggcac
aacggtgctggcaaaacaaccaccatgtctatcctgacgggtttgtttccccccacggct
gggactgtgtacattaagggcatggacatccgcactgacatggacatcatcaggaagacc
ttgggagtgtgtcctcagcacaatgtcctttttgacattctgaccgtagaggagcatgtg
tggttctatggtcgtctgaagggcctatcaggcgatgaggtgaggaaggagttggacact
ctcctggaggatgtgggcctgctgcacaaacgccacgaacagaccaggaacctgtctggt
ggtatgcagaggaagctgtcggtggccatagcatttgtggggggttcgaaggtggtggtc
ctggatgagcccacagctggggtggacccctactcccgtcgaggcatttgggacctgctg
ctcaagtaccgcaaagatcgcaccatcatcctctccacccactacatggatgaggctgac
cttctcggagaccgcatagccatcatctcccaagggaagctgtgctgctgcggctccccc
ctcttcctcaaggccaagctggggacgggctactacctcaccgtcgtcaagaaggaggga
ctggatactcgaacccccagtagtgccagcgctaccaaactgccccctgccacaaaggac
agtgactcctccatgagtgacgacacaggtctgggcagtgatgttagtggctcagacctg
gctgccctgttgaccctggcgcagcgtcacatccccggggcgcggctggtggaggacgtg
ggccgtgaggcggtcatcaacctgccccagaagtcggcagaggacagcagtctggccatc
ttcctcacagaggttgacaggaggcaggctgatctgggcatcactagctacggcctgtct
gacaccaccctggaggagatctttctgagagtggctgaggagacaggggtggatgtggac
ccagaggacagcccaggacaagctgacacaccccatgggcagggtcaatcacagggcttg
tctggagagccatctgaggatccagagccccaggagacggacctgctgagtggggatggc
catggcggtgtccctctgaccggttggggtttgacgtggcagcagctccgtgctctcttc
atcaagaggtggctgtatgccctccgcagtcgcaggggcttcttcgctcagatcgtgctg
cctgctgtgtttgtgttgatcgctctccttttcagcctcatcgtccctccgttcggaaag
tacccctcgctccagctacagccctggatgtacggggaacagtacaccttcttcagcaac
gatgcccctggggatcctgccattcagaatctgctggatgcccttctggaccggcctgga
tttggaaccaagtgcatggaaaacagcacggatcctcagtgtttgcaggaggaggaaggc
atgttcatgaggccccagattctctactccacctggcagctcttcaacaggggcaactgg
actgcagacaagccatctcctgactgtgagtgcagctctgaggaagtccgcaggatgcta
ccagactgccctgaaggagccggaggcatcccccctccacaggtccagagattgacaggg
gatatcctgcagaatatgaccggccgcaatatctcggactacctggtcaagacttaccct
cagataatgaagaaaagcctaacttcagccactaagaagtggatcaatgaattcagatat
gggggcttctctctggggggcagaggtactcaggctgtcccacaggcctaccaaatggag
cactcagtcatgtctatacggtcacgttacaaagtggcacagaatagctcattggatcag
ctcctgggtcgcctaccagagtttctgggtggcctgaatagtcagaacaatgttaaggtg
tggtataacaacaagggttggcacgccatggcatcgtttgtcaatgtcatgaacaatggc
ctgctccgtgccagcctgcccccagggccagagcgaatgaagtatggcataaccgcctac
aaccaccctctcaacctcaccaaggaacagctcactgaaattgccatgatgaccacctca
gtagatgttctggtgtccatctgtgtgatcttctccatgtcctttgtgccggccagcttt
gtgctgtttctcatcgaggagagggtcagcaaagccaagcaccttcagtttgtcagcgga
gtccggcccattctctactggctggctaacttcacctgggacatgctgaactatacagtc
ccggccactatggtggtcctcatcttcatttgcttccagcaacagtcctatgtgtctgaa
accaacctccctgctctggtcctgttgctcttgctttatggctggtctatcactcctctc
atgtatccagcctccttcctgttcagtgtccccagcactgcttatgttgtcctcacctca
atcaacctcttcatcggcatcaacggcagcatagccacctttgtcttggagctgttcgta
gatcagcacttgaacgatatcaacaagatcctaaagaaagtcttcctgatcttcccccac
ttctgtctgggtcgaggcctcatcgacatggctaagaaccaggctatgttggatgctttc
cagagactgggcgcaaagcagaccctggaccccctggaatgggactttgtggggaagaac
ttgtttgccatggctgtggagggtgtcgtgttctttctcttcacaatactactacagtac
aagttctttgtcaactgcaggccctgctctgagcctgagttgcctcctcttggcccggaa
gatgaggacatcgccagggagagagagagagtgaagagtgggaaagcccaagccgatata
ctcaccatgatggacctgagtaaggtgtacaaagctggcaagaagccagcagtagatcgt
ctgtgtctgggtattcctcgtggtgagtgctttggcctgctgggggtaaatggggctggg
aagacctccacgtttcgcatgctgactggagacactgcgatcacctatggagaagcattt
ctcagtcatcacagtgtgctgacggagatggagcgggtccaccagctgatgggctactgc
ccccagtttgatgccatctgcgacctgctgactggcagggagcacctggagttctacgct
aggctccgaggggtgccagaggagtctgtggctaaggtggctcaatggggagtgaagaag
ctggggctgacccagtatgcagagcgagaggccggaggctacagtggaggcaacaaacgc
aaactctccactgctatctccctgatcggagctccccctgttatattcctggatgagccc
accactggcatggaccccaaggccaagagattcctgtggaactgcatcctgagcgtcatc
aaggagggaagggccgttgttctcacctcccacagtatggaggaatgtgaagctctctgc
acacgaatggccatcatggtgaacggaaggttccagtgtctgggctccgttcaacatctt
aagaacaggttcggggacggctacacgatcgtcctgcgcctgtcagggaccaagcctccc
gaggatccgtgcacagtggacacctacatcaagggctccttcccgggcatcgagctaaag
gagaggcaccagaacgtgctgcagtaccagctgccctcccactcctgctccttggctcgg
gtcttcgatgtgctttccaacaaccacgaggagctgggcatcgccgactactcagtgtca
cagaccaccctggaccaggtgtttgtcaactttgccaaagagcagagcgatgacgacctg
ctgagggaagtgacagtcaacggagggacaccagcacctcaacccagaagagcggcccag
cccacccaaccagggcagacagccaaaccagctcaaacaaccaagcctccccagtctgtc
aagtcctcagacggcagacccagagagaccaagccaaacggggtaccagacagtggcatg
gcgatgaccagcaggccacaggagaagccccagtcgagcaggagagagttgagtagtcgg
agatcaagcaaggaatcgtctgccaacggatccaagggcacaagggagacttcaggcagt
aaggatccgaccagtctgttcctagtgggtagcagcacacaagacagcagtgtgtaa
DBGET
integrated database retrieval system
