KEGG   Oncorhynchus kisutch (coho salmon): 109906969
Entry
109906969         CDS       T09179                                 
Name
(RefSeq) collagen alpha-3(IX) chain-like
  KO
K08131  collagen type IX alpha
Organism
oki  Oncorhynchus kisutch (coho salmon)
Pathway
oki04510  Focal adhesion
oki04512  ECM-receptor interaction
oki04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:oki00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    109906969
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    109906969
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    109906969
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00535 Proteoglycans [BR:oki00535]
    109906969
Proteoglycans [BR:oki00535]
 Extracellular matrix (ECM) proteoglycans
  Others
   109906969
SSDB
Motif
Pfam: Collagen
Other DBs
NCBI-GeneID: 109906969
NCBI-ProteinID: XP_031649820
Ensembl: ENSOKIG00005010390
UniProt: A0A8C7DMU4
LinkDB
Position
LG17:48429445..48456748
AA seq 678 aa
MSIFSALGLLLLCQLLASSPAQRPGPRGAVGPPGPLGPAGKDGTDGKDGPAGLSGKAGPK
GKAGGAGGPGNPGLPGLPGVDGLTGADGPAGKDGPPGELGDAGPPGPGGPPGRGRPGAPG
PPGANGLAGGIGPQGPAGPEGLAGLAGPPGPDGPPGLPGALPDGSGDLLCPAICPPGPSG
PPGMPGFKGHTGHKGDKGELGKDGEKGYAGPSGPPGIPGTVGLQGPRGLRGLQGPMGAVG
DRGLPGFRGKPGIAGIIGKTGDVGEKGPEGFRGPKGEIGKIGPKGVPGGAGPKGEPGIPG
RDGKDGTQGLDGEKGDAGRNGVPGEKGPNGLPGLQGKAGSKGATGGVGDPGEMGEAGPSG
EPGIPGDIGIPGERGEAGTRGVAGGIGPVGNIGVRGSKGFQGIKGSLGDPGLPGPTGIRG
GFGERGPVGASGPKGDVGVAGADGLPGENGEPGPFGPVGQKGESGKRGELGPKGVVGPQG
ELGARGVPGKPGLMGFQGEQGLSGIAGKIGVPGKLASEQHIRELCGSMIDDQIAKLASNL
RRPLSPGQVGRPGIAGPTGKPGETGSIGHPGSRGPPGYRGLPGDLGDPGPRGDLGEQGDK
GPIGKAIEGPIGDQGYQGIPGVFGIVKDGRDGSPGDPGEPGEAGRTGRTGHSGSPGICDT
TACQGANVHAKTSNPKNH
NT seq 2037 nt   +upstreamnt  +downstreamnt
atgtctatattctcagctctcgggctgctcttgctgtgccagcttttggcatcatctcca
gcccagagacccggcccacgaggagcagtcgggccgccaggacccctgggaccggcaggg
aaggatggtactgacggcaaagatggccctgctggactttcagggaaagctggacccaag
gggaaagcaggcggagcaggaggaccagggaacccaggcctgcccggcctcccaggggtg
gacggattgacaggtgctgatgggcctgcagggaaggacggtcctccaggggagttgggc
gatgctggacctcccgggccaggtggacctcctggcagagggagaccgggagctccaggg
ccaccaggagccaatgggcttgcgggcggaatcgggccacagggaccagcaggccctgag
ggtcttgcaggattggctgggccacccggccctgacggacccccaggtcttcctggggct
ctccctgatggcagtggagatctgttgtgtcctgccatctgccctcctggcccctccggc
cctccaggaatgcctggattcaagggtcacacaggacacaaaggagacaagggagagctc
gggaaagacggagagaagggttatgctggcccatctggtcctccgggtattcccggcact
gtgggcctgcagggtcctcgtggtttgaggggacttcagggcccgatgggtgcagtagga
gacaggggtttacctggtttccgaggcaaacctggtattgctggcatcatcggcaagaca
ggtgatgttggagagaaaggaccagagggatttagagggccaaagggcgagattggcaaa
attggtccaaagggagttcccgggggagcaggacccaaaggggagcctggcatccccggc
agagacgggaaagatggcacccagggactggacggcgagaagggcgacgccggacggaat
ggggtacccggtgagaaaggacccaacggccttcctggtttacaaggaaaggctggctca
aagggagccacaggaggagttggcgacccaggagagatgggagaggcagggccgtctgga
gagccaggtattcctggcgacatcggtatcccaggagagaggggcgaggcgggaaccaga
ggagtggctgggggcatcggaccagtgggcaacatcggggttcggggcagcaaaggcttc
cagggaataaaggggtctctgggggaccctggccttcccggaccaaccggaatccgcggc
ggatttggtgagaggggtccagtcggagcatcaggccctaaaggagacgtgggtgtggca
ggagctgatggtttgcccggggagaatggagaacctggtccattcggtccagttggccaa
aaaggagagtctgggaagcgtggagagctgggacccaagggcgtggtgggaccacaggga
gagctcggagccagaggggttcctgggaaaccaggcctcatgggctttcagggtgaacag
ggtctgtccggaatcgctggcaagattggtgttcccggtaaactggcaagcgaacagcac
atcagagaattgtgtggatctatgattgatgatcagattgcaaagctggcttccaacctc
agaagacccctgtcccctggccaagtgggtcgccccggcattgccggacctacggggaaa
ccaggcgagactgggtctatcggtcaccccggctcccgtggacctcctggctacagagga
ctgcctggagacctgggagacccaggtcccagaggtgatcttggtgaacagggtgacaag
ggacccattggaaaagccatcgaagggcccattggagaccaaggataccaaggtatccca
ggagtatttggaatcgtcaaagacgggcgtgacggatccccaggagatccaggagaaccc
ggagaggcaggtaggacaggaaggaccgggcactcgggctccccaggaatctgcgacact
accgcctgccagggggcaaatgtccatgcgaaaacctccaatcccaagaaccattaa

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