Oncorhynchus kisutch (coho salmon): 109906969
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Entry
109906969 CDS
T09179
Name
(RefSeq) collagen alpha-3(IX) chain-like
KO
K08131
collagen type IX alpha
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki04510
Focal adhesion
oki04512
ECM-receptor interaction
oki04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
109906969
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
109906969
09142 Cell motility
04820 Cytoskeleton in muscle cells
109906969
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
oki00535
]
109906969
Proteoglycans [BR:
oki00535
]
Extracellular matrix (ECM) proteoglycans
Others
109906969
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
109906969
NCBI-ProteinID:
XP_031649820
Ensembl:
ENSOKIG00005010390
UniProt:
A0A8C7DMU4
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Position
LG17:48429445..48456748
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AA seq
678 aa
AA seq
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MSIFSALGLLLLCQLLASSPAQRPGPRGAVGPPGPLGPAGKDGTDGKDGPAGLSGKAGPK
GKAGGAGGPGNPGLPGLPGVDGLTGADGPAGKDGPPGELGDAGPPGPGGPPGRGRPGAPG
PPGANGLAGGIGPQGPAGPEGLAGLAGPPGPDGPPGLPGALPDGSGDLLCPAICPPGPSG
PPGMPGFKGHTGHKGDKGELGKDGEKGYAGPSGPPGIPGTVGLQGPRGLRGLQGPMGAVG
DRGLPGFRGKPGIAGIIGKTGDVGEKGPEGFRGPKGEIGKIGPKGVPGGAGPKGEPGIPG
RDGKDGTQGLDGEKGDAGRNGVPGEKGPNGLPGLQGKAGSKGATGGVGDPGEMGEAGPSG
EPGIPGDIGIPGERGEAGTRGVAGGIGPVGNIGVRGSKGFQGIKGSLGDPGLPGPTGIRG
GFGERGPVGASGPKGDVGVAGADGLPGENGEPGPFGPVGQKGESGKRGELGPKGVVGPQG
ELGARGVPGKPGLMGFQGEQGLSGIAGKIGVPGKLASEQHIRELCGSMIDDQIAKLASNL
RRPLSPGQVGRPGIAGPTGKPGETGSIGHPGSRGPPGYRGLPGDLGDPGPRGDLGEQGDK
GPIGKAIEGPIGDQGYQGIPGVFGIVKDGRDGSPGDPGEPGEAGRTGRTGHSGSPGICDT
TACQGANVHAKTSNPKNH
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgtctatattctcagctctcgggctgctcttgctgtgccagcttttggcatcatctcca
gcccagagacccggcccacgaggagcagtcgggccgccaggacccctgggaccggcaggg
aaggatggtactgacggcaaagatggccctgctggactttcagggaaagctggacccaag
gggaaagcaggcggagcaggaggaccagggaacccaggcctgcccggcctcccaggggtg
gacggattgacaggtgctgatgggcctgcagggaaggacggtcctccaggggagttgggc
gatgctggacctcccgggccaggtggacctcctggcagagggagaccgggagctccaggg
ccaccaggagccaatgggcttgcgggcggaatcgggccacagggaccagcaggccctgag
ggtcttgcaggattggctgggccacccggccctgacggacccccaggtcttcctggggct
ctccctgatggcagtggagatctgttgtgtcctgccatctgccctcctggcccctccggc
cctccaggaatgcctggattcaagggtcacacaggacacaaaggagacaagggagagctc
gggaaagacggagagaagggttatgctggcccatctggtcctccgggtattcccggcact
gtgggcctgcagggtcctcgtggtttgaggggacttcagggcccgatgggtgcagtagga
gacaggggtttacctggtttccgaggcaaacctggtattgctggcatcatcggcaagaca
ggtgatgttggagagaaaggaccagagggatttagagggccaaagggcgagattggcaaa
attggtccaaagggagttcccgggggagcaggacccaaaggggagcctggcatccccggc
agagacgggaaagatggcacccagggactggacggcgagaagggcgacgccggacggaat
ggggtacccggtgagaaaggacccaacggccttcctggtttacaaggaaaggctggctca
aagggagccacaggaggagttggcgacccaggagagatgggagaggcagggccgtctgga
gagccaggtattcctggcgacatcggtatcccaggagagaggggcgaggcgggaaccaga
ggagtggctgggggcatcggaccagtgggcaacatcggggttcggggcagcaaaggcttc
cagggaataaaggggtctctgggggaccctggccttcccggaccaaccggaatccgcggc
ggatttggtgagaggggtccagtcggagcatcaggccctaaaggagacgtgggtgtggca
ggagctgatggtttgcccggggagaatggagaacctggtccattcggtccagttggccaa
aaaggagagtctgggaagcgtggagagctgggacccaagggcgtggtgggaccacaggga
gagctcggagccagaggggttcctgggaaaccaggcctcatgggctttcagggtgaacag
ggtctgtccggaatcgctggcaagattggtgttcccggtaaactggcaagcgaacagcac
atcagagaattgtgtggatctatgattgatgatcagattgcaaagctggcttccaacctc
agaagacccctgtcccctggccaagtgggtcgccccggcattgccggacctacggggaaa
ccaggcgagactgggtctatcggtcaccccggctcccgtggacctcctggctacagagga
ctgcctggagacctgggagacccaggtcccagaggtgatcttggtgaacagggtgacaag
ggacccattggaaaagccatcgaagggcccattggagaccaaggataccaaggtatccca
ggagtatttggaatcgtcaaagacgggcgtgacggatccccaggagatccaggagaaccc
ggagaggcaggtaggacaggaaggaccgggcactcgggctccccaggaatctgcgacact
accgcctgccagggggcaaatgtccatgcgaaaacctccaatcccaagaaccattaa
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