Oryzias latipes (Japanese medaka): 101156649
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Entry
101156649 CDS
T02443
Symbol
cnot1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X3
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101156649 (cnot1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ola03019
]
101156649 (cnot1)
Messenger RNA biogenesis [BR:
ola03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
101156649 (cnot1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
101156649 (cnot1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Med13_C
Motif
Other DBs
NCBI-GeneID:
101156649
NCBI-ProteinID:
XP_011474668
LinkDB
All DBs
Position
6:complement(25875795..25899232)
Genome browser
AA seq
2385 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECVSLISKPNFISTLCYAVDNPLHYQKSLKPSAHLFAQLSKVLK
LSKVQEVIFGLALLSSSNTDLRGFSAQFIKQKLPDLLRSYVDADLGGNQEGGFQDIPIEV
LHLLLSHLLFGQKGASGVGQEQIDAFLKTLCRDFPQERCPVVLAPLLYPEKRDIPMDRIL
PDSGELAKTTMESSLADFIQEVGYGFCASLDECRNIILQYGVREVTASQVARVLGMMART
HSGLTDGISLQSISAPGSGIWSDGKDKTDSSQPHTWNVEVLIDIVKEVDPSLNFKQVTYE
LDHPGFTIRDSKGLQIVVYGIQRGLGLEVFPVDLIYRPWKHAEGQLSFIQHSLMNPDVFC
FADYPCHTVAIDILKAPPEDDNREIATWKSLDLVESLLRLSEVGQYEQVKQLFNFPIKHC
PDMLVLALLQISTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
SMAEWYMRGEQYDQAKLSRILDVAQDLKVRLDSLSMLLNGTPFAFVIDLAALASRREYLK
LDKWLTDKIREHGEPFIQACVTFLKRRCPSIMGGLAPDKDQPKSAQLPPETLATMLACLQ
TCAGSVTQELSETILTMVANCSNVMNKARQPPPGVMPKGRAPSTSSLDAISPVQVDPLTG
MSSLNLGGTATSHTQSIQGFPGSLGSAFSNPQSPAKAFPPLTNPNPSTPFGGIGSLASQL
PGMDSGPLGSGIGPGIASSLGMPTVSTDPFSTRKMSTPGLNPPTFQQTDLSQVWPEANQH
FSKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLFEEY
RFFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPYGSKMYYFGIAALD
RFKNRLKDYPQYCQHLASIAHFLQFPHHLQECVQYIEYGQQSRDPPVKMQGSITTPGSMA
LAQVQAQSQQSAGLKAPQPGQASTLVTTTTTTTTVAKPTTITRPTTSSFKKDMPPSINTT
NIDTLLVATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQY
LVMKRVSIEPNFHSLYSNFLDTLKNPEFVKMVLNETYRNIKVLLTSDKAAANFSDRSLLK
NLGHWLGMITLAKNKPILYTDLELKSLLLEAYVKGQQELLYVVPFVAKVLESSLRSMVFR
PQNPWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLSLDINDLKPGNLLKDKEKLKMLE
EQLSAPKKESKPPEEMLPVSTTAPPSTPAATTTTCTTTGPPTPQFSYHDIHVYSLSGLAP
HINVNVNIPLLQAHPQLKQCVRQSVERAVQELVHPVVDRSIKIAMTTCEQIIRKDFALDS
EESRMRVAAHHMMRNLTAGMAMITCREPLLVSIATNLKNSFAAALRAPTPQQREMMEEAA
ARVAQDNCELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAER
MPEQIRLKVGGVDPKQLAVYEEFARNIPGFLPSNDLSQPTGFLAQPMKQQAWATDDVAQI
YDKLIADMEQHLHAIPPTLTINPLTQALRSLLESVALARNSRDGIAALGLLQKAVEGLLD
ATSGADADLLLRYRECHLLVLKALQDGRAYGPQWCNKQITRCLIECRDEYKYNVEAVELL
IRNHLVNMQQYDVHLAQSMENGLHYMAVAFAMQLVKLLLVDERSVSHVTEADLFQTIETL
MRTCAHSRANAPEGLPQLMDVVRSNYEAMMERAHGGPNFMMHSGISQASEYDDPPGLREK
AEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISY
RAQAEQQHNPAASAAIIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVV
GVLIQDHDVRQTEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKA
PGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELNKPMQIL
YKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLK
VDMLSEINIAPRILTNFTGVMPSQFKKDLDSYLKTRSPVTFLSELRSNLQVSNEPGNRYN
IQLINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIA
NQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIK
NPAFKFWSHDFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTSAS
NT seq
7158 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggctttgtctcaaatcagctatctggtggacaattta
acaaagaaaaactatcgagccagccagcaagaaatacagcatattgtaaatcgtcacgga
cctgaggcagacaggcatctactacgctgtctcttctcccatgtggatttcagtggcgat
ggtaaaagcagtggaaaggactttcaccagacacagtttttgatccaggagtgtgtgtcg
ctgatttcaaagcccaactttatctccactctgtgttacgccgttgacaatcctctgcat
taccagaagagtttaaaaccatcagcccaccttttcgctcagctcagtaaagttctcaag
ctcagcaaggtccaggaggtgatttttggccttgccttgcttagttccagcaacacagac
cttcgaggtttctctgcacagttcatcaagcagaaactcccggacctcctccgctcatac
gtcgacgcagatcttggaggaaaccaggaaggtggcttccaggatattcctatagaggtg
ttgcacctgctgctttcccatctactattcggtcagaagggggccagtggggtagggcag
gagcagattgacgccttcctgaagaccctttgccgagattttccccaggagcgctgccct
gtggtgctcgcaccacttttgtaccctgaaaaacgggacattcctatggacaggatctta
ccagactcgggggagttggccaagaccaccatggagagttctcttgccgacttcattcag
gaagtgggctatggcttctgtgctagtctggatgaatgcaggaacataatcctccagtat
ggcgtgagagaggtgactgccagccaggtagccagggtcttggggatgatggctcgaact
cactctggccttaccgatggcatctcgctgcagtcaatctctgctccaggaagtggcata
tggagtgatgggaaggataagactgacagctcgcagccgcatacgtggaacgtggaagtt
ctcattgatatcgttaaagaagtggatcccagcctgaacttcaaacaggtgacttatgaa
ctggaccacccaggctttacaattcgtgacagtaaaggcctgcagatagtggtgtacggt
atccagagggggctgggtttggaggttttccctgttgatctcatctatcgcccatggaaa
catgcagaaggacagttgtccttcattcagcactccctgatgaacccagatgtgttctgc
tttgcggattacccctgtcacaccgttgccatcgacatcctgaaagccccgcccgaggac
gacaacagggagattgcaacatggaaaagtctggacctggtggagagtctcctccgcctc
tctgaggtcgggcagtacgagcaggtgaagcagctcttcaactttcccatcaagcactgc
ccagacatgctggtgctggcactgctgcagatctccacctcctggcacacgctacgtcac
gagctcatttccaccctgatgcccatctttctgggcaatcaccccaactcagctattata
ctgcattatgcctggcacgggcaggggcagtctccttccattcgtcagctcatcatgcat
tctatggctgagtggtacatgaggggggagcagtacgaccaggccaagctctcacgcatc
ctagacgtggcccaggacctgaaggttagactcgattctttatccatgctgctgaatggt
actccatttgcctttgttattgacctcgctgcacttgcctctcgccgtgaatacctcaaa
cttgataagtggctgactgacaaaatcagagagcatggggaacctttcatccaggcgtgt
gtgaccttcctgaagaggcgctgtccatccatcatggggggtctggctcctgacaaagat
cagcccaaaagtgcccagctccccccagagactttggccaccatgcttgcctgtctacag
acttgtgctgggagtgtgacccaagagttgtcagaaactatccttaccatggttgccaac
tgcagcaatgtaatgaataaagctcgacagccaccaccgggggtaatgccaaagggacgg
gctccgagcacaagcagcctcgacgcaatctcaccggtgcaggtggaccctctaactgga
atgagctccttgaacctgggtggcacggccacttcccacactcagagcatacagggcttc
ccaggctctctgggttcagctttcagtaatccccaatcccctgcaaaagcctttccacct
ctcaccaaccccaaccccagtacaccatttgggggtattggcagtctggcctcgcagctt
cctggtatggactctggtcctctgggctccggcatcggccccggcattgcctccagcctc
ggaatgccgacagtaagcactgaccctttcagcaccaggaagatgagcacaccggggctg
aacccgccgacctttcagcagactgacctttctcaggtgtggcccgaagcaaaccagcac
tttagtaaggagatagacgacgaagcaaacagttacttccagcgaatctacaaccaccca
cctcacccaaccatgtctgttgatgaagtgttggagatgcttcagaggttcaaggactcc
accatcaagcgggagcgggaggtgttcaactgcatgcttcggaacctgtttgaggaatac
agattcttccctcagtaccctgacaaggagttgcacatcactgcctgtctgtttgggggc
atcattgagaagggtctggtcacatacatggctttgggtctggcactgcgatatgttctt
gaagccttacggaaaccgtacggatccaaaatgtattactttggaattgcagctttggac
cggttcaaaaacagacttaaggattaccctcagtattgtcaacacttggcctcaattgct
cacttcttgcagtttccacatcatctgcaagagtgcgtgcagtatatcgagtatggccag
cagtcacgggaccccccggtgaagatgcagggctccatcaccactcctggcagcatggct
ctcgcacaagtccaagcccagtcgcagcagtctgccggcctcaaggcgccacaaccgggc
caggccagcactcttgttaccacgacaacaactacaaccacagtagccaagccgaccacc
atcacaagaccaacaaccagcagcttcaagaaggacatgcctccttccataaacactacc
aacatcgatacgctgctggtggccacggaccagacggaaaggattgtggagcctccagag
aacgtccaggagaagatcgctttcatcttcaacaacctttctcagtccaacatgactcaa
aaggtggaggagctgaaggagacggtgaaggaggagttcatgccctgggtgtctcagtac
ttggtgatgaagcgagtcagcatcgagcccaacttccacagtctctattccaactttttg
gacacactgaagaacccagagtttgttaagatggttctcaatgaaacttataggaacatc
aaggtgcttctgacgtcagacaaggcagctgctaatttctcggatcgctccctgctgaag
aacctgggtcactggttgggcatgatcactctggccaaaaacaagcctattctttacaca
gatctggaactcaaatctttgttactggaagcttatgtgaaaggccagcaagagctgctc
tatgtggtcccttttgtggccaaagttttagagtcaagtcttaggagcatggttttcagg
cctcagaatccttggaccatggccattatgaatgttctcgctgagctccatcaggaacat
gacctcaagctgaatttaaagtttgagattgaagttctgtgtaagaacttgtctctggac
atcaatgacctgaagcctggaaatctgctgaaggacaaagagaagctgaagatgctggaa
gagcagctgtctgcaccaaagaaggagtccaagcctcctgaggaaatgctgcctgtttca
accacagctcctccctccaccccagctgcaaccaccaccacctgcacaaccacggggcct
cccaccccacagttcagctaccacgacatccatgtgtactccctttctggcctggcccct
cacattaatgtaaacgttaacatccctctgctgcaggcgcacccccagctgaagcagtgt
gtgaggcagtcagtggagcgggcggtccaggagctggtgcaccctgtggtggatcgctcc
atcaaaatcgccatgacgacctgcgagcagatcatcaggaaggacttcgccctggattca
gaagagtctcgcatgcgtgttgccgcccaccacatgatgaggaacctcacggcaggcatg
gccatgatcacctgccgtgagccgctgctcgtgagcatcgccaccaatctgaagaacagc
tttgctgcggcgcttcgggctccaaccccccagcagagggaaatgatggaggaagctgca
gccagggtcgctcaggacaactgtgaactggcatgctgcttcattcagaaaactgctgtg
gagaaggctggcccagagatggacaaaaggctggctacggagtttgagctgaggaaacat
gctcgccaggagggacggcgctactgtgatcccgttgtcctgacctaccaggctgagcgg
atgcctgaacagatcaggctgaaggtgggaggagtcgaccccaaacagctggctgtttat
gaggagtttgccagaaacatcccgggtttcctgccgagcaacgatctttcacagcccact
ggcttcctggctcaacccatgaagcaacaggcatgggccactgatgacgtggctcagatc
tatgacaagctaattgcagacatggagcagcatcttcacgccatccctccaactctcacc
attaaccctctgactcaggctctgcgcagcctgctggagtccgtggccttggccaggaac
tccagggatggcattgctgctcttgggctgctgcagaaggctgtggaaggactcctggat
gctacaagtggtgctgatgcagatttgctgcttcgctacagagagtgccacctgctggtg
ctgaaagccctgcaggacggacgagcttatggaccacagtggtgcaataaacagatcaca
aggtgtctgattgaatgtcgggatgaatacaaatacaacgtggaggcagtcgagcttctg
atcaggaaccatttagtgaacatgcagcagtatgacgtgcatctggcgcagtcgatggag
aacggattgcactacatggccgtcgctttcgccatgcagttagtgaagctgctgctggtg
gacgagcgcagcgtcagccacgtcaccgaggccgacctcttccagaccatcgagacttta
atgagaacctgtgctcactccagagccaacgctccagagggtcttccccaactgatggat
gttgtccgctcaaactatgaagccatgatggagcgtgcccacggcgggcccaactttatg
atgcactctgggatctcacaggcgtcagagtacgacgatcctccggggctgcgggagaag
gccgagtacctcctgagggaatgggtcaacctgtatcactcggctgctgcaggcagagac
agcaccaaagctttctccgccttcgtgggccagatgcatcagcaaggaatcttgaagacg
gatgacctgatcacacgattcttccggctgtgcacagaaatgtgtgtggagatcagctac
cgcgctcaggctgagcagcagcacaacccggcagccagtgcagccatcatcagagccaag
tgttaccacaacctggacgcctttgtgcggctcatcgccctgctggtcaagcactctgga
gaggccaccaacaccgtcaccaagatcaatctcctcaacaaggtgctggggatcgtagtc
ggtgtgctcatccaggaccatgacgtccgtcagacagagttccagcagcttccataccat
cgcattttcatcatgctgctgctggagctcaacgccccagaacacgtcctggagaccatc
aacttccagaccctcactgccttttgcaataccttccacatcctgagacccaccaaagcg
ccgggctttgtgtacgcctggctggagctcatctcccaccgcatcttcatcgccaggatg
cttgcacacacaccgcagcagaagggctggcccatgtatgcacagctgctcatcgatctc
ttcaagtaccttgcccctttcctgaggaatgtagaactcaacaaacctatgcaaattctc
tacaagggcacgctgcgagtcctccttgtcctgctgcacgacttcccagaattcctgtgt
gattaccattacggcttctgtgatgtcatcccacccaactgcatccagctccgcaacctc
atcctcagtgccttcccacgcaacatgaggctccctgacccgttcacccccaacctgaag
gtggacatgctgagtgagatcaacattgctccccgaatcctcaccaacttcacgggcgtg
atgccctctcagtttaagaaggatctggactcgtacctgaagacgcgctctccggttacc
ttcctctctgagctgcgcagcaacctgcaggtgtcaaacgaaccaggaaaccgctacaac
attcagctgatcaacgccttggtgttgtacgtgggcacacaggccatcgctcatattcac
aacaagggcagcaccccctcaatgagcaccatcacccactctgcacacatggacatcttc
cagaacctggctgtggacctggacactgaggggcgatacttgtttttgaacgccatcgcc
aatcagctgcgctaccccaacagccacacccattatttcagctgcaccatgctgtacctg
ttcgctgaggccaatactgaggccatccaggagcagatcaccagggttctgttggagagg
ctgatcgtgaacaggcctcatccgtgggggctccttatcaccttcatcgagctcatcaag
aaccctgcctttaagttctggagtcacgactttgtgcactgtgcccccgagatcgagaag
ctgttccagtccgtcgcccagtgctgcatggggcagaaacaggcccagcaggtaatggag
ggcaccagtgccagctag
DBGET
integrated database retrieval system
