Oryzias latipes (Japanese medaka): 101163140
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Entry
101163140 CDS
T02443
Name
(RefSeq) collagen alpha-1(IX) chain
KO
K08131
collagen type IX alpha
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola04510
Focal adhesion
ola04512
ECM-receptor interaction
ola04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
101163140
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
101163140
09142 Cell motility
04820 Cytoskeleton in muscle cells
101163140
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
ola00535
]
101163140
Proteoglycans [BR:
ola00535
]
Extracellular matrix (ECM) proteoglycans
Others
101163140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
101163140
NCBI-ProteinID:
XP_023812393
LinkDB
All DBs
Position
1:complement(1745050..1761913)
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AA seq
698 aa
AA seq
DB search
MFVSSVERRKTMAPSRICRVSLLVLLLQAVLICSAQRGPVGPRGPPGPPGVAGVPGVDGI
DGERGVDSTVTGPPGLDGDDGKDGSPGKPGLPGADGPVGPPGDPGPAGKKGSKGEPGAQG
PPGEPGVGPDGLDGIPGTDGLPGEMGRAGPPGARGRRGQVGPSGLVGPRGPPAVYNGESP
CPSACTSGLSGYSGLPGMKGHKGAKGESGEPGRQGHKGVEGEQGPPGETGTQGLPGPGGP
RGLPGIMGSKGDRGPRGKPGDAGPRGVQGEPGDPGQRGAVGEAGPSGGTGDPGPAGIRGV
PGPKGEPGLPGPDGREGIPGLPGSKGIVGKSGAPGDPGPQGLHGVPGGYGQKGHGGVKGN
SGDPGVVGLMGPPGKQGERGDQGEVGPAGPRGGPGERGERGADGPPGPPGARGTKGDPGL
PGLPGPAGYRGEKGDRGAVGVNGPKGEQGPPGAEGTPGDRGDVGDQGEPGEKGSTGPPGE
TGNKGAEGSRGVPGKEGKSGPPGPRGMQGDMGVPGLPGVQGPAGKPPSDSHIKRVCMRVM
QEHLAQLAASLTRPESGIAGIPGPPGPPGPPGPTGENGFPGHIGSRGLPGLKGPPGLLGQ
KGPKGDQGDKGDRGPTERGPKGEPGVPGLPGEPGRPAYGAHGRDGEPGPRGVPGINGVPG
PPGPPGQNGYCESSQCILAMVASPVSAKDSGMKGPNEM
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
atgtttgtgtcttccgtggagcgcaggaagaccatggctccctccaggatctgcagagtc
tctctgctggttcttctgttgcaggcggtgctgatttgttcggctcagagaggcccagtc
ggacccagaggccccccaggaccaccgggtgtggctggcgtgccgggagtggatggaatc
gacggggagagaggagtggactccacggtgaccggtccaccaggtctggacggagacgac
gggaaagacggatctcctggaaagccgggtcttccgggtgcagatggacccgtgggacct
cctggagatccaggtccggctggaaagaaagggtcaaaaggggaacctggagctcaagga
cctcctggagagcctggggtcggacccgatgggctcgatggcattccgggtaccgatggg
ctcccaggagaaatgggacgggccggccccccaggagcgaggggcaggaggggtcaagtc
ggtccttctggtctggttggtcctcggggacctcctgcggtctataacggagaatccccg
tgccccagtgcctgcacctcaggcctgtcgggatactctggactccccggcatgaagggc
cacaaaggagcaaagggggaatccggagagcccggacgtcaagggcacaagggcgtggaa
ggtgaacaaggaccacccggagagactggcactcaaggattaccaggtccagggggaccc
agaggccttccaggaataatgggctccaaaggtgacaggggacctcggggaaaacctggc
gatgcgggccctcgaggcgtccagggagaaccgggggatccgggtcaaagaggcgccgtg
ggcgaggccggaccgtcaggagggaccggggatccaggacctgcaggaatcagaggagtt
ccaggtccaaaaggagaaccgggtctcccgggtcctgatggtcgtgagggaataccgggt
cttcctggatccaagggtattgtggggaaaagtggagctccaggtgaccccggccctcag
ggtcttcatggggtgcccggtgggtacggccagaaaggacacgggggcgtgaagggtaac
tcaggagatccgggagtcgtgggtttgatgggacctccagggaaacagggggaacgagga
gatcagggagaggtgggaccggctggacccagaggaggacccggcgagcgtggagagagg
ggagctgacggacctccgggaccacctggagcccggggaacaaagggggatccgggtctt
ccaggacttcctggacctgctggttatcgaggcgagaagggggacaggggggcggttggc
gttaacggcccaaagggagagcaggggcctccaggagctgaaggaacgccaggagacaga
ggagacgtgggggatcaaggagaaccaggcgagaaaggatcgacgggccccccaggagag
acgggaaacaaaggagctgaaggcagccgaggagtgccgggcaaagagggcaagtcgggt
ccaccgggtccgcggggcatgcagggggacatgggggtcccaggcctgcctggtgtgcag
gggccggcgggaaaacccccgtcggactcccacatcaaacgggtctgtatgcgggtcatg
caggaacacttggcccagctggctgcaagtctcaccagaccagaatccggcatcgctgga
atcccaggtcctccgggtcctcctggacccccaggccccaccggggaaaacggttttcct
ggtcacatcggatcgagaggcctgccgggtctgaagggcccacctgggttactgggtcag
aagggacccaaaggtgaccagggggacaaaggagaccgaggacccacagagaggggaccc
aaaggagaaccaggggtaccaggtctaccaggtgagcccggccggccggcttacggcgcc
cacggccgcgacggggagccggggcctcgtggcgtccccggcatcaacggcgtgcccggg
cctcctggccccccgggtcaaaacggttactgtgagtcgtcgcagtgcatcctggccatg
gtggcgtcgccggtctctgccaaggactccggcatgaagggccccaacgagatgtga
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