Osmia lignaria (orchard mason bee): 117610252
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Entry
117610252 CDS
T09775
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
olg
Osmia lignaria (orchard mason bee)
Pathway
olg03013
Nucleocytoplasmic transport
olg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
olg00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117610252
03015 mRNA surveillance pathway
117610252
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
olg03019
]
117610252
Enzymes [BR:
olg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
117610252
5.6.2.5 RNA 5'-3' helicase
117610252
Messenger RNA biogenesis [BR:
olg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
117610252
mRNA cycle factors
Common to processing body (P body) and stress granule
117610252
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
UvrD-helicase
Helicase_RecD
DEAD
ATPase
NPHP3_N
SRP54
AAA_16
AAA_22
nSTAND3
AAA_10
AAA_7
AAA
AAA_32
AAA_5
Motif
Other DBs
NCBI-GeneID:
117610252
NCBI-ProteinID:
XP_034193306
LinkDB
All DBs
Position
Unknown
AA seq
1119 aa
AA seq
DB search
MSVDAYGPSSQTLTFLDTEEADLIGADTQGSEFDFTDFTLPSPSQTQASQHDTAQSQPNQ
PVQVNGTSGSSSLELKISGAAQSLAELQFEEEEEEAYYNRDLPEHACKYCGIHEASCVVM
CNICRKWFCNGRGNTSGSHIINHLVRAKHKEVTLHRDGPLGETVLECYSCAVRNVFVLGF
IPAKADSVVVLLCRQPCAAQSSLKDMNWDQEQWKPLIEDRSFLAWLVKIPSEQEQLRARQ
ISAQQINKLEELWRDNVDATFQDLEKPGVDEEPQQVLLRYEDGYQYQNIFGPLVKLEADY
DKRLKESQTQENIEVRWDVGLNKKTIAYFMLAKTDGDMKLMHGDELRLRYLGELHKPWSG
IGHVIKIPDNYGEEVGIELKNNSGAPTECVSNFVVDFIWKSTSFDRMQLALRKFAVDDTS
VSGYIYHRLLGHEVEEVLFRCHLPKHFSAPNLPDLNRSQVYAVKHAVQRPLSLIQGPPGT
GKTVTSATIVYQLVKQNGGPVLVCAPSNTAVDQLTEKIHKSNLKVVRLCAKSREAIDSPV
SFLALHNQIKNMETNTELQKLQQLKDETGELSSVDEKRYRLLKKAAEKELLEAADVICCT
CVGAGDPRLHRLKFHSILIDESMQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAA
RAGLSQSLFERLVVLGIRPFRLEVQYRMHPDLSRFPSNFFYEGSLQNGVCADERKLLKID
FPWPAPDKPMFFYVTQGQEEIAGSGTSYLNRTEASNVEKIATRFLRCGVKPEQIGVITPY
EGQRAYLVQYMQYQGSLHSKLYQEIEVASVDAFQGREKDIIIMSCVRSNEHQGIGFLNDP
RRLNVALTRAKYGIIIVGNPKVLSKQPLWNHLLSFYKEQKVLVEGPLNNLKESMIQFAKP
KKLVNTANPGSHFMSTSMYDAREALIPGSVYDRSGSQVNGQQNHNPYYQRNVPLDIFSRT
HDTISYISPERAQAAMNNVPVPVGMFMNMAHVPPRFYNQHQQALQARQNQRNRRGTALSK
NKQGPRMGKLSQTEQNTQPYSQPGLPLTQGTTQGMSQPGFSLSQPGLSQAELSQDSFAVG
EFQSQMDGLLSQDSTYQGDRSGFYQSGQSQAGGQFSQPY
NT seq
3360 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtcgatgcatacggacccagcagtcagaccctcacgtttctcgacacggaggaa
gcggatttaatcggtgcggacactcaaggcagcgagtttgactttacggattttacgtta
ccttcgccgagtcaaacgcaagcttcgcaacacgatactgctcaaagtcaacctaaccag
cccgtacaggttaacggaacaagcggcagttcgtctctggaattgaaaatttccggggca
gcgcaaagtctagccgaattacagttcgaggaggaagaagaggaagcttactataatcgt
gatttgccagaacatgcctgcaaatactgtggaattcatgaagcatcctgcgttgttatg
tgcaatatctgtcgcaaatggttctgcaatggacgtggaaacacatctggttcgcacatc
atcaaccaccttgtccgagctaagcacaaggaagttactttacacagagacggtcctttg
ggagaaactgttctggaatgttattcttgcgctgtccggaatgttttcgtcctcggtttc
atccctgcgaaagcagattctgttgtcgtgttgctttgtcgtcaaccatgcgcggctcaa
agttcgttgaaggacatgaactgggatcaagaacagtggaaaccgttgatcgaagaccgt
agctttttggcatggttagtgaaaattccatccgaacaagaacagttgcgagctcgacag
atttctgcccaacagataaataaattggaagagttgtggcgtgataacgtcgacgcgacc
tttcaagacctcgagaaacctggagtggacgaagaaccgcaacaagttttgttgcggtac
gaggatggttaccagtatcaaaacatatttggtccgcttgttaaattagaagccgattac
gacaaacgtttaaaggagtctcaaactcaagaaaacatcgaagttcgttgggacgttgga
ttgaataaaaagaccattgcctatttcatgttggcgaaaaccgacggagatatgaaattg
atgcacggagatgaattaagacttcgctatttgggcgaacttcacaaaccttggtcagga
attggacacgtgataaagattcctgataattacggagaagaagtcggtatcgagttgaag
aataattctggcgctcctacagagtgtgtcagtaactttgttgttgattttatttggaaa
agtacaagttttgatcgcatgcaattagcattgcgaaaatttgccgtggacgacacctcc
gtatctggttacatataccataggttgttaggacacgaagtggaagaagtcctgtttcga
tgtcaccttccgaagcatttcagtgctcctaatttaccggatttgaatcgttctcaagta
tacgctgtgaaacacgccgtacaaagacctttgtctctaattcaaggaccacctggaacg
ggaaaaactgtgaccagcgctacgatagtttatcaattggtcaaacagaacggcggtcct
gtgttggtatgcgctccttcgaacacggccgtcgatcagttgaccgagaaaatacacaag
tctaatctaaaagttgtacgactttgcgcgaaatcccgagaagcgatcgattcaccggtc
agctttcttgctcttcacaatcaaataaaaaatatggaaacaaacacggagctgcaaaag
ttacagcagttgaaggacgaaaccggagaattatcgagcgtcgacgagaaacgttataga
cttttgaagaaagcagcagagaaagaattgttggaagcagccgatgtgatttgttgtact
tgcgtcggtgccggtgatccaaggttgcacagactgaaattccattctattcttatcgac
gaaagtatgcaagcgaccgaacccgagtgcatggtaccggttgtactcggtgctaagcaa
ttaattctggttggtgatcattgtcaattaggacctgttgttatgtgcaagaaggcagcc
agagcaggtttatctcaatctcttttcgagagattagttgtacttggaatcagaccgttc
cgtttggaggtacagtatcgtatgcatccggacctatcgcgtttcccatcgaacttcttc
tacgagggttccttacaaaatggagtatgcgcggacgaaagaaaactgttgaagatcgat
ttcccttggccagcacccgacaaacccatgttcttttatgttacccaaggacaagaagaa
atcgctggaagtggcacgtcgtacttgaatcgtacagaagcgtccaacgtcgaaaagata
gcgacacggttcttgcgttgcggagtaaaacccgaacaaatcggagtgataactccgtac
gagggacagagggcctatttggttcagtacatgcagtaccaaggctcgttgcattcgaaa
ttgtatcaagaaatcgaggtcgccagcgtagacgcgtttcaaggcagggaaaaagatata
ataatcatgtcctgtgtacgatcgaacgaacatcaaggtatcggattcttgaacgatccg
agaagattaaacgttgcattgacccgtgcaaaatacggcataataatcgtagggaatcca
aaggtgttgtccaagcagccgctctggaatcatttgttgagtttctacaaagaacaaaag
gtactcgtcgaagggcctttgaataatcttaaagaatctatgattcaatttgccaagcca
aagaaattggtgaataccgctaatccaggctcgcatttcatgtccacctcgatgtacgat
gcgagagaagctcttattccaggatccgtatacgatcgttcgggtagccaagtgaacggt
caacagaatcacaatccgtattatcagaggaacgtacctttggacatattcagcagaact
cacgatacgattagttacattagtccagagagagctcaggcagcgatgaacaacgtacca
gttccagttggaatgtttatgaacatggcgcacgtgccgccgcgtttctataatcaacat
caacaagcgttacaggccagacagaatcaacgtaatcgtcgtggtaccgctttgtcgaag
aataaacaaggcccgcgaatgggcaagttgagtcaaaccgaacagaatacccaaccgtac
agtcagccgggtttaccgttgacccagggtacgacacagggtatgtcacagccaggcttt
agtctttctcaacctggattgagtcaagcggaactttcacaggattcgtttgccgtcggc
gaatttcaatcgcaaatggacggtctcttgtcgcaagattcaacttatcaaggtgatcga
agtggtttttatcaatctggacagtcacaagccgggggacaattctcccagccatactga
DBGET
integrated database retrieval system
