Olivibacter sp. LS-1: FKG96_09065
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Entry
FKG96_09065 CDS
T06195
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
oli
Olivibacter sp. LS-1
Pathway
oli03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
oli00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FKG96_09065 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oli03021
]
FKG96_09065 (rpoC)
03400 DNA repair and recombination proteins [BR:
oli03400
]
FKG96_09065 (rpoC)
Enzymes [BR:
oli01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FKG96_09065 (rpoC)
Transcription machinery [BR:
oli03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FKG96_09065 (rpoC)
DNA repair and recombination proteins [BR:
oli03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FKG96_09065 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
DUF2015
Motif
Other DBs
NCBI-ProteinID:
QEL00947
LinkDB
All DBs
Position
2274292..2278572
Genome browser
AA seq
1426 aa
AA seq
DB search
MSYKKDNKIKSNFTSITISLSSPEAILERSSGEVLKPETINYRTYKPERDGLFCERIFGP
VKDYECHCGKYKRIRYKGIVCDRCGVEVTEKKVRRERMGHINLVVPVAHIWYFRSLPNKI
GYLLGLPTKKLDMIIYYERYVVIQPGIKEEDGIQYMDFLTEEEYLDILDTLPKENQYLDD
KDPQKFVAKMGAEALEELLQRIDLDQLSYDLRHQAANETSQQRKNEALKRLQVVEAFRGS
RERIENRPEWMIVKIVPVIPPELRPLVPLEGGRFATSDLNDLYRRVIIRNNRLKRLIEIK
APEVILRNEKRMLQEAVDSLFDNSRKVNAVKTEGNRALKSLSDILKGKQGRFRQNLLGKR
VDYSARSVIVVGPNLKLHECGLPKDMAAELYKPFIIRKMIERGVVKTVKSAKKIVDRKDP
IVWDILENVLKGHPVLLNRAPTLHRLGIQAFQPKLVEGKAIQLHPLVCTAFNADFDGDQM
AVHLPLGNAAILEAQILMLAAHNILNPANGTPITVPSQDMVLGLYYITKGRRTDDSRVVK
GQDMTFYSPEEVIIAYNEKKIDLHAFIKVKTNVKDKDGNIVKQLIDTTVGRVLFNQVVPE
EVGYINELLTKKSLRDIIGDVVKTTGMARAAKFLDDIKELGFQMAFRGGLSFNLQDLNIP
DAKAGLIEQATREVEEVMNNYNMGFITNNERYNQIIDIWTRINNRLTANVMDILSNDNQG
FNSVYMMLDSGARGSKEQIRQLCGMRGLMAKPQKSGSSGGEIIENPILSNFKEGLSVLEY
FISTHGARKGLADTALKTADAGYLTRRLHDVAQDMIVTEEDCGTLRGIFTTALKDNEDIV
EPLYDRILGRTSLHDVYDPVSNELLVSADQDITEEIAEKIERSSVEGIEIRSVLTCESKR
GVCALCYGRNLASGKRVQMGEAVGVIAAQSIGEPGTQLTLRTFHVGGTASNIAAESQIVA
KFDGIVEFENMRSVERETEEGKLHIVLGRSGEFRILDPESKKVLMTNNIPYGSFLYIADG
DKVTKGDRICSWDPYNAVIISEFAGTVEFDAIIEGVTYREESDEQTGHREKVIIDTRDKT
KNPAIKILDNAGDVIRTYNLPVGAHIAVDNAGKAKVGEIIAKIPRSAGKTRDITGGLPRV
TELFEARNPSNPAVVTEIDGVVTLGGVKRGNREIQIESRDGQVKKYLVPLSKHILVQDND
FVKAGMPLSDGSISPSDILAIKGPAAVQEYLVNGIQEVYRLQGVKINDKHFETIVHQMMQ
KVMIEDPGDTRFLEKDAVNKWDFIEENDSMYDKKVVTDPGDSNVLKAGQIVSLRKLREEN
SSLKRRDLKLVQVRDAIAATSSPMLQGITRASLGTKSFISAASFQETTKVLNEAAISGKR
DDLLGLKENVIVGHLIPSGTGLRNYDRIIVGSKEEYDQLLASKEEV
NT seq
4281 nt
NT seq
+upstream
nt +downstream
nt
atgtcttacaagaaagataataaaataaaaagcaacttcacctcgattacgatcagcttg
tcgtctccagaagctattttggagcgttccagcggtgaagtattaaaaccggaaaccatt
aactaccgtacttataagccggagcgtgatggtctgttttgtgagcgtatcttcggtcct
gtaaaggattacgaatgccattgcggtaagtataagcgtattcgttataaaggtatcgtc
tgcgatcgatgtggcgtagaagttactgaaaagaaggtgcgtagagagcgcatgggacat
attaatttggttgttccggtagctcatatctggtattttcgttcacttccaaataagatt
ggatatttactaggtttgccaactaagaagttggatatgattatctactatgagcgatat
gtcgtaatccagcctggtataaaggaagaagatggcatccagtacatggatttcttaacg
gaggaagagtatctggatatattggatactttaccaaaggagaatcaatatcttgacgat
aaggatcctcagaagtttgtggcgaagatgggggctgaagcgttggaagaattattgcaa
cgaattgatttagatcaattgtcatatgatttacgtcaccaagccgctaatgagacttcg
caacaacgtaaaaatgaagcattaaaacgccttcaagtagttgaagctttccgcgggtca
cgcgagcgtattgaaaatcgtccggagtggatgattgttaaaatcgttccggttattcct
cccgagttacgtcctttagttcctttggaaggtgggcgctttgctacgtcagatttgaac
gacttatatcgccgtgttattattagaaataaccgtttaaaacgtttgatcgaaatcaaa
gcacctgaagtaattttacgtaacgaaaagcgtatgcttcaggaagctgtggattcatta
ttcgataactcccgtaaagtgaatgccgtgaagacggaaggtaaccgtgcactaaaatca
ctttccgatatcctaaaaggtaaacaagggcgtttccgtcagaacttattaggtaagcgt
gttgactattcggcacgttccgttattgtggttggaccaaacctgaaactgcatgagtgc
ggattgcctaaagatatggctgctgaattatacaaaccgtttattatccgtaaaatgatt
gaacgcggggttgtaaaaacagtgaaatcagccaaaaaaatcgttgaccgtaaagatccg
attgtttgggatattttggaaaacgtattgaaaggacaccctgttcttcttaaccgtgca
cctacgttgcaccgtttaggtatccaggcttttcagccgaaattagtggaaggaaaggcg
attcagcttcaccccttagtgtgtacagcgttcaacgccgactttgacggtgaccagatg
gcggtgcatttgcctttaggaaatgcagctattttggaggctcaaatactaatgttagcc
gctcataacatcttgaacccggcgaatggtacaccgattaccgtaccttctcaggacatg
gttttgggactttattacattacaaagggacgtagaacagatgattcgcgtgtggtaaaa
ggccaggatatgaccttctactcgccggaagaagttatcattgcttataacgagaagaaa
attgatttacacgcctttattaaggttaaaactaatgtaaaggataaagatggtaatatc
gttaagcaattaattgatacaaccgttggtagggttttattcaatcaagtagttccggaa
gaggtaggttatatcaatgagctacttacgaagaagtctttacgtgatatcatcggcgat
gtggtgaaaaccactggtatggccagagcagcgaagttcttggatgatattaaagaactt
ggtttccaaatggcgttccgtggaggtttatcatttaacttacaagatcttaatattccg
gatgcgaaagctggtttaattgagcaagcaacacgtgaagtagaagaagtgatgaataac
tataatatgggattcattaccaataacgaacgttataaccaaattatcgatatctggacg
cgtattaacaaccgtttgactgccaatgtgatggatattttatccaatgataaccaaggc
tttaattcggtttatatgatgctggattcaggtgcccgtggttctaaggagcagattcgt
cagctctgtggaatgcggggattgatggcgaaaccacaaaaatccggttcgtcaggaggt
gaaattatcgaaaacccaattttatccaactttaaggaaggtttatcggtactcgagtac
tttatctcaacgcacggtgctcgtaaaggtcttgcggatacagcattaaagacagctgac
gccgggtacttaactcgtcgtttgcacgatgtcgcgcaagatatgatcgttaccgaggag
gattgtggtacattgagaggtattttcactactgctctgaaagataacgaagacatcgtt
gaacctttatatgaccgtatactaggacgtacttcgctgcacgatgtgtatgatccggta
agcaatgaactattggttagtgctgatcaagatattacggaagagattgcagagaagata
gagcgttcttcagtagaaggtatagaaattcgttcggtattaacttgcgaaagcaagcgc
ggtgtttgtgccttgtgttatggacgtaaccttgcgtcgggtaaacgtgttcaaatggga
gaagcggttggtgttatcgccgctcagtctatcggtgagccaggtacacagcttacactt
cgtacgttccacgtgggtggtacggcttctaacattgctgctgagtcgcaaatcgttgct
aaatttgacggtatcgttgaattcgagaatatgcgttcggtagagcgcgaaacggaagaa
ggtaaattgcacatcgtattgggccgctcaggtgaattccgcattcttgatccggaatct
aagaaggtactgatgaccaataacattccttacggttcgttcctatacattgccgatggt
gataaggtaacgaagggcgatagaatctgttcttgggatccgtacaacgcggttattatt
tctgaatttgcaggtacggttgaatttgatgcgatcatagaaggtgttacctatcgtgaa
gagtctgatgaacaaaccggacaccgcgagaaagtaatcatcgatacgcgtgataaaacg
aagaacccggcgatcaaaattttggataatgcaggtgatgtaatccgtacctacaactta
ccggttggtgcccacattgctgtggataatgccggtaaagcaaaagtgggggaaattatc
gcgaaaattcctcgttcagctgggaagacccgcgatattacggggggtctaccgcgtgta
actgaattgtttgaagcaagaaacccttctaatccagctgtcgtaacagaaatcgacggg
gtagtaacgttagggggagttaaacgtggtaaccgtgaaattcaaatagaatcacgtgat
ggccaagtgaagaaatacttagtgccactttctaaacacattttagtacaagataatgac
ttcgtgaaggcaggtatgccgctttctgacggctctatttcgccgtctgatattttagcg
ataaaggggccagctgctgtacaagagtatttagtaaacggtattcaggaagtttaccgt
ctgcaaggtgtgaaaattaatgataaacactttgagacaattgtacatcaaatgatgcaa
aaggtcatgatcgaagacccaggcgatacccgcttcttggaaaaggatgctgttaacaaa
tgggattttatcgaagagaacgacagtatgtacgataagaaagtggtaactgatccaggt
gattcaaatgtactgaaagctggtcagatcgtgtctctacgtaaactgcgagaagagaat
tctagtttgaaacgtcgagatctaaaactggtacaggtgcgtgatgcaattgctgctact
tccagtccaatgcttcaaggtattacacgtgcatcattgggaaccaaatcgtttatatcg
gcagcgtctttccaggaaactaccaaagtgttaaacgaagcggctattagtggtaaacgc
gatgatttactaggattgaaagagaatgttattgtcggacacttaatcccttcgggtacc
ggtttacgtaattatgaccgtatcatcgttggatctaaagaggaatatgatcagttgttg
gcttctaaagaagaagtttaa
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integrated database retrieval system
