Ostreococcus lucimarinus: OSTLU_119527
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Entry
OSTLU_119527 CDS
T01029
Symbol
tho2
Name
(RefSeq) transcription & nuclear export THO-TREX component protein Tho2-like protein
KO
K12879
THO complex subunit 2
Organism
olu
Ostreococcus lucimarinus
Pathway
olu03013
Nucleocytoplasmic transport
olu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
olu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
OSTLU_119527 (tho2)
09122 Translation
03013 Nucleocytoplasmic transport
OSTLU_119527 (tho2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
olu03019
]
OSTLU_119527 (tho2)
03041 Spliceosome [BR:
olu03041
]
OSTLU_119527 (tho2)
Messenger RNA biogenesis [BR:
olu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
OSTLU_119527 (tho2)
Spliceosome [BR:
olu03041
]
Complex C
Other components
EJC/TREX
OSTLU_119527 (tho2)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
OSTLU_119527 (tho2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tho2
Thoc2
THOC2_N
Motif
Other DBs
NCBI-GeneID:
5000400
NCBI-ProteinID:
XP_001416161
JGI:
119527
UniProt:
A4RSZ0
LinkDB
All DBs
Position
2:489201..492320
Genome browser
AA seq
1039 aa
AA seq
DB search
MSNTDDRFASLMQISRDDPSNSDDYFWVRLSAAESSALSVDPLTLQNEIHADHAMVNGLL
LNADTNFIEAQRLSIGSWSRKELRTNTKITYQLPKSDLLAENLEGYARALSTLRMDSLTT
SGRRHSKLIVESHTLMGLFKLNPLRVFDLVFDSVRELADSKHGDAFATSLESSTHLSDII
GFRLTRCADFKRRHKIAQFELKIAAEKENTEIGRLYPYLLPVDRSLYDKARSLQGVSPVD
ELYSDEPKFLFLESTGSKAGLLPIQASVERIIRLGCGTHALPKLRAKMCEQLKKRIHDEK
EKHDENQKLESILRIVFFLGPNVCCDAALTTELLKYFQRVVANKREHLKLIEPAIAKCLL
PGLPLLRPNPLICEYIWKVVHQLPLASRGKIYKHAMFVTCSTRLTQIKSSADKSIMRILR
RLSNQNAKELGRKLGKLALCHPLTVTKAVLQQVQAYPNMIAPIVQALKYCTALTFDTLTF
SVLEHFTETKSKLKEDGQNFSLWFSALCSFSGTLLRQYHDIELNDLLRYILKKLDEGEVL
DLLILKDLISKLTGIEILKDVSSLEIQRMAAGEKLRGLHENSTSTDSKRRMKGILRLRTA
IEGSDASKSMMLRLLLAIAKCRQRIVLKTASAQMKFLGQLFDECHVVLLQYISFLHTAYS
VAELKNSLPEIQSLLCEHQLDAAVVFHLYRPILRQTLFSSLDTSSSLAESHNQYWKKLSR
DVKASLHSDELWGLVSPEFYLTFWSLNLEDVYVPKELYAKARARTVKYGSTASSTFDQVT
QLPSNVVHDELAESLNVELQQLIEHVSRGTQCILRKNSTWVQTADNLSPASVILETCVLP
RCKISHADALYCSNFVELVGRSDTDSFSFIQYYDTLFRNVSYLIYACSEFENKFFATFLT
SGMAQLTRWRACDVYKRECWQRSEFRNCLNQSSVEASFKDYLRVLYKWEHRLTKGILRNL
QNEDYMEVANSLSSLIAIVDTFPVTELLGNYIYSQVKRISMRDKRDDIKTISNRYLSLLN
LKRASWKCVPPEDDSASQS
NT seq
3120 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaacacagatgatcgctttgcatctctcatgcaaatttcacgcgatgaccccagt
aattcagatgattacttttgggtgcgcttgagtgccgcggaaagctcggcgctcagtgtc
gatccgttgacccttcagaacgagatacatgcggatcatgcgatggtcaatgggcttttg
ctgaatgcagacacaaatttcatagaagcacagcgattaagcatcggttcctggtccaga
aaagagttgagaacgaacacgaagatcacgtaccaactaccgaaatcggatttacttgca
gaaaatctcgaaggttatgcacgagcgctgtcaacacttagaatggattcgctcacgacg
tcaggaagacgtcactcgaaattgatcgtcgaaagccacactcttatgggccttttcaag
ctaaaccctctccgggtgttcgatttagtctttgactcagtcagagaacttgctgactcc
aaacacggcgatgcttttgcaacatcgttggaatctagtactcatttaagcgatataata
gggtttcgcttgacaaggtgcgccgatttcaaacgacgacacaaaatcgcccagttcgag
ctgaaaatcgctgctgaaaaagagaacactgaaatcggtagactgtatccttacctgctc
ccagttgaccgatctctgtatgataaagcccgaagcttgcaaggtgtatcgcccgtagac
gagttatactctgatgagccaaagtttttgtttctggaatcgactggaagtaaagccggt
ttgttgcctattcaagcgtcggtcgaaaggatcatcagactgggttgtggtactcatgcc
ctgccgaaacttcgggcgaaaatgtgtgagcaacttaaaaagagaatacatgacgagaag
gaaaaacatgacgagaaccagaaattggaatctattctccgcatcgtcttctttcttgga
ccaaatgtatgctgtgatgcagctctaacgactgaacttcttaagtacttccaaagagtt
gtcgcgaataaaagagagcatttgaaattgatcgaacctgctattgcaaagtgtttgcta
ccaggattaccacttctgaggccgaatcctttaatatgtgaatacatctggaaagttgtc
catcaacttccgcttgcatcacgcggaaaaatatacaaacacgccatgtttgtcacgtgt
agcactcgactgactcagataaagagttcagccgataaatcaataatgaggatcttacga
agattgtcaaatcaaaatgcaaaagagctcggccgtaaacttggtaagctcgcactttgt
caccctttaacggtgacgaaagcagtactgcaacaggttcaggcgtatccaaacatgatt
gcaccgatcgtgcaagctttgaaatactgcaccgcactaactttcgatactttgaccttt
tctgtcctcgaacattttaccgagacaaaatccaaactcaaagaagatggccaaaacttt
tcgctatggttttctgctttgtgttctttttctggaacattgctcagacaataccatgac
attgaacttaatgacctattgcggtacattttgaaaaaattagacgaaggtgaagtgttg
gatttattgatattaaaggatcttatatcgaaattgactggtatcgaaatcttgaaggat
gtcagttcgcttgagattcaaagaatggcggctggagaaaaacttcgaggacttcacgag
aactctacgagcactgactcaaaacgacggatgaaaggaattttgcgtttacgcacagca
attgaagggtcggacgcttcgaagagtatgatgcttcgattactattagcaatagcgaaa
tgtcgccaacgaattgttctgaagacggcaagtgctcaaatgaaatttttgggtcaactt
tttgatgaatgtcacgttgttctattgcagtatatttcgtttcttcacacagcttacagt
gtagcagagctcaagaactcgctgccagagatccaatctcttctgtgtgaacaccaactt
gatgctgctgtcgttttccatttgtatcgtccaattcttcggcaaacactattttcatct
ctggatacaagcagctcccttgctgaaagtcacaatcaatactggaagaaactaagcaga
gatgttaaggcaagtctccattctgacgagctttggggattggtatcgccagaattctac
ctcactttttggtcgctcaatctcgaggatgtttacgtacccaaagagctgtatgcaaaa
gcgcgcgcgcggactgtgaaatatggttcaactgcatcgtcaacgtttgatcaagttact
caattgcctagtaatgttgttcacgacgaactggccgagagtttaaacgtagagctgcaa
caacttattgaacatgtttccagaggtacacagtgtattctgagaaagaactcaacctgg
gtgcagactgcggataatttgtctcctgcgagtgtcattttggaaacatgtgtactacca
aggtgcaaaatctcacacgctgatgcgttgtattgctcaaattttgtggagcttgttggt
cgaagtgacacagattccttcagttttattcagtattacgatacactattccgtaacgta
tcatatctcatctatgcttgcagtgaatttgaaaacaaattttttgctactttcttgacg
agtggtatggctcagctcacacgttggagagcgtgtgatgtatataagagagagtgctgg
cagcgctctgaatttcgtaattgcttgaatcagagcagtgtcgaagcaagtttcaaagac
tacttgagggttctgtacaaatgggagcataggttgacgaaaggcatcctgcgtaatcta
cagaacgaagactacatggaagtcgccaattcgttgagctctctaatagcaatcgttgat
acatttcctgtcactgaacttttaggcaactatatctacagccaagtcaaaagaatcagt
atgagggacaagagggacgacatcaaaacaatatcgaacagatacctatcacttctgaat
ttaaaacgggcaagttggaaatgtgttccacccgaggacgacagtgcaagtcagagttga
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integrated database retrieval system
