Ostreococcus lucimarinus: OSTLU_43496
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Entry
OSTLU_43496 CDS
T01029
Name
(RefSeq) predicted protein
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
olu
Ostreococcus lucimarinus
Pathway
olu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
olu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
OSTLU_43496
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
olu03021
]
OSTLU_43496
Enzymes [BR:
olu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
OSTLU_43496
Transcription machinery [BR:
olu03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
OSTLU_43496
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
Nop14
Motif
Other DBs
NCBI-GeneID:
5006565
NCBI-ProteinID:
XP_001422669
JGI:
43496
UniProt:
A4SAV6
LinkDB
All DBs
Position
20:complement(join(158624..162815,163047..163846))
Genome browser
AA seq
1663 aa
AA seq
DB search
MPRDATATTARHRVKQRGLVQKEIASASFSFYDAEDVRKISVKRITNPVLFDGLNNAVAD
GLYDPALGPTDSKTTCVTCKFPGGMCAGHFGHLELVVPVYNPLTFGTVVRLLKTTCFHCH
KFRLHASRVRRFRERLEMLMDGDMEAAEGVLPEISKKAKEEMSSVFKEVEGDGDAEEMDL
DNIHDVLPRLKTRGRGEPVVWTSITSTAARNLIKEFLAIQPKKCENCGAMNPKVSPEGHN
KIFRGALPKAHHENNLAKGIDINDDMASDSETMSVDERVQEAAKSLYITPIEARALLKRL
WMYEYDFCSMIWATTPPNKCTKRGEERRSDPARFFIQTLLVAPSKFRPPSKMGDMIFDHP
QNTALTTIIQANLSLAELFRTPPTVPEPPEVRAGRAVRAWLALQSGVNRLIDATKADTQE
AKQAIGIRQQLEKKEGLFRMNMMGKRVNFAARSVISPDPYLGTSEIGVPPVFAKKLTFPE
LVTPHNVDLMRTLVENGPEIHPGANAIEDERGRVIHLDKFTAEKRAAIAKTLLATTAAGS
ADGPARPLAKTVYRHLRDGDVMLVNRQPTLHKPGILAHTARVLPGQRVVRMHYSNCSTFN
ADFDGDEINLHFPQDHLGRAEAYEIMHGDRQFTVPTDGKPLRGLIQDHICSGLLLSMRDS
FFDRSEFTQLLYSGLVDYCGDEHGKIDVPAPALLKPKALWTGKQVIAAVLSHITRGRPPL
TFSAPCKIPATFFGGEDSGEDRLIIRRNYFCSGVVDKNMFGKYGLVHAVAELHGRSTAGA
LLSIFSRLFTNFLQKHGFTCGIDDLILTADAEKDRVVELNKADEMCKTATADVAEASGKS
DEEVMTAIAAKLLENPEWGAQLDMKASGALNKVTSATVKKCLPFGTKKPFSKNCLSIMTI
SGAKGSLVNFSQIAAALGQQELEGRRVPRMPSGKTLPSFEPFDISSRANGYIACRFFSGL
DPAEYFFHCMAGREGLVDTAVKTARSGYLQRCLVKNLESMRVHYDFTVRDSDGSIVQFQY
GEDCVDVTRSGYLEKFEFLAENPELILLNNEAAISMLPKLNKKKVSVLETIGRKEELPRF
CMENFGDQLGVLPEKFGDELKTFIDSRPKGYWAEEKGKKNESSLAAKSGLTAEEFAMLMN
MRYLTYVAPPGEAVGVIAAQSVGEPSTQMTLNTFHFAGRGEANVTLGIPRLRELLMAASK
KLLTPVMILPLKPGCRTKENAETLCRRLRRVILAELITKLCIKVKDYGIGPDEGLSRLYT
VVIQMREGQNDDDPNEVTFAEFLHAVKRKFAKMLVARIGSDMRKSKSNNGVIVKNAKNGP
MQGTTDPRKDDDEEEDDEKEKNSAARAKNVKFENGDASDEDEDDEEDEEGAKTENRKIDE
TEVDSDSDGSSSSGDDDSDASSDDASAKTPKSKKKRVPSSEMTDCGVQLTEDEVVETIVC
DEKSRTIEFTVPAGINSPHVLVLEIAQEVAVKTIIRETPGIKQTFVVGKTDDEDPTGSQP
LSIQTDGINFGAAWANSDLIEVNSMKSNSVWDIMQTFGVEAGRSTLVSEVQAVFGVYGIG
VDTRHLSLIGDFMTQQGEYRPCNRSGIEKSTSPFLKMSYETATAFLTDATIRGETDDLSS
PSSRIVVGRTVDLGTGSFSLKHDIVRAAQYQEANKATGKHIRL
NT seq
4992 nt
NT seq
+upstream
nt +downstream
nt
atgccgcgcgatgcgacggcgacgacggcgcgacaccgggtcaaacagcgcggactggtg
cagaaagagatcgcgagcgcgagcttcagcttttacgacgccgaggatgtgcgcaagata
tcggtgaagaggatcacgaacccggtgctgttcgacgggttgaacaacgcggtggcggat
ggtctgtacgaccccgcgctcggaccgacggactcgaaaacgacgtgcgtgacgtgtaaa
tttccgggagggatgtgcgcgggacactttggacacctcgagctcgtcgtgccggtgtac
aacccgttgacgttcggcacggtggtgcggttgctgaagacgacgtgttttcattgtcac
aagtttcgcttgcacgccagtcgcgtgcgaaggtttcgagagcggttagagatgctcatg
gatggtgacatggaagcggccgagggagtacttccggagattagcaagaaggcgaaggaa
gagatgagctcagtgtttaaagaggtcgagggcgacggcgatgcggaggagatggattta
gacaacatccacgacgtcttgccgagattgaaaacgcgtggtcgaggtgaaccggtcgta
tggacttcgatcacgtccacggcagcgcgaaatttaatcaaggagtttctcgcgatacaa
ccgaagaagtgtgagaactgtggggctatgaatccgaaggtgtcgcccgagggacacaat
aagatcttcagaggtgcacttccgaaggcgcatcacgagaacaacttagccaagggcatt
gacatcaacgacgatatggctagcgactcagagacgatgtccgtggatgagcgcgtgcag
gaggcggcaaagtcgctttacatcaccccaattgaggctcgagctttgcttaaacgttta
tggatgtacgagtacgatttttgttccatgatctgggcgacgaccccaccgaataagtgc
acgaagcgaggcgaagagcgtcgaagtgatccggcgaggtttttcattcaaacactcctc
gtggctccgtcaaagttccggccgccaagcaagatgggcgatatgatctttgatcacccg
caaaatacggcgctcacgacgattatccaggccaatttaagtctggccgagctctttagg
acgcctccaacggtcccagagccgcctgaggtgcgagcaggccgagccgtacgcgcttgg
ttggctttgcaatccggcgtgaatcggctcatcgacgccacgaaggctgacacccaagaa
gccaagcaggctattgggattcgtcagcagcttgagaagaaagagggtttatttcgcatg
aacatgatgggtaagcgcgtgaatttcgccgcacggtcggtgatttcccccgatccatac
ctgggcacgagcgaaattggcgttcctccggtgttcgcgaaaaagctcacgtttcccgag
ctcgtcaccccacataacgttgacttgatgcgcacactcgttgaaaacggacctgaaatc
catccaggggcgaacgcgatcgaagacgaacgagggcgtgtgattcacttggacaagttc
accgccgaaaagcgagctgccatagcgaagactctcttagcaacgacggccgctggatct
gcggacgggccggcgagaccgctcgcaaagacggtgtatagacatttacgcgacggcgac
gtgatgctcgttaatcgtcagccaacgttgcacaagcctggtattttggcgcacactgcg
cgggttctaccggggcagcgagtcgtccgtatgcactactccaactgttccaccttcaac
gccgatttcgatggggatgaaatcaaccttcactttccgcaggatcacttaggacgagcc
gaagcgtatgaaatcatgcacggcgatcgtcagttcaccgtaccaacggacgggaagcct
ctcagagggttgatccaagaccacatctgttccgggttgttgctctccatgcgagacagc
ttcttcgatcgatccgagttcacgcagcttctttacagcggtctcgtggactactgcggt
gatgagcacgggaaaatcgacgtcccggcgcctgctctcctcaagccaaaagcactttgg
accggcaaacaagtcatcgccgcggttttatcgcacatcactcgagggcgaccaccgcta
acgttcagcgcaccgtgcaagatcccagccacgtttttcggcggtgaagactctggcgaa
gatcgactgattattagacgaaactacttttgctctggggtcgtagacaagaatatgttc
ggcaagtacggccttgtgcacgccgtggccgagctccacggacggtccacagccggcgct
ttattgtcaattttttcccgactttttaccaactttttgcaaaagcatggctttacgtgc
ggtatcgatgatttgattctcaccgctgatgcagaaaaagatcgcgtagtggagctaaac
aaggcagacgagatgtgtaagacggctacagcagatgtcgcagaagcgagcgggaaatcg
gatgaggaagtgatgacggctatcgcggcgaagttgctcgaaaatcccgaatggggcgct
caattggacatgaaagcgtcaggcgctttgaacaaggtgacttcggcgaccgtgaagaag
tgtctcccgttcggtacaaagaagccattctcaaagaattgtctctccatcatgaccatc
tctggcgcaaagggttcgcttgtgaacttttctcaaatcgccgccgccttgggccagcaa
gagctcgagggtcgccgtgtacctcgcatgccgagtggtaagacgctcccttcattcgag
cctttcgacatcagctcgcgggcgaacggttacatcgcctgtcggttttttagcggattg
gatcccgccgagtactttttccactgcatggctggtcgcgaaggtttggtcgataccgcc
gtgaagactgcgcgctctggttacttgcagcgttgtttggtgaaaaacctagaatcgatg
agagtgcattacgattttaccgtgcgtgacagcgatggaagcattgtgcagtttcaatac
ggggaggattgcgtcgacgtcacgcgttctgggtacttggagaagtttgagttccttgcc
gaaaacccggaactcattttgctcaacaacgaagccgcgatttcgatgttgcccaagctc
aacaagaaaaaagtaagtgttcttgagaccataggtcgtaaagaagagctaccgcgattc
tgcatggaaaactttggcgaccagttgggagtgttgccagagaaattcggcgatgaactt
aaaacgttcatcgactcgcgaccgaaaggttactgggccgaagagaaaggaaagaagaat
gaaagttcattggcggcaaagtccggtttgaccgctgaagagtttgccatgctgatgaat
atgcgttatctcacgtacgttgcgccccccggcgaagccgtcggcgtcattgccgcgcag
tctgttggagaaccatccacacaaatgacgttgaataccttccactttgccggccgcggc
gaagcaaacgtcacgcttggtattcctcgtcttcgagagttgctcatggctgcatcaaag
aagcttttgacgcccgtcatgatacttccgttgaaacctgggtgcagaactaaggaaaat
gctgagacgctctgtcgccgactccgacgagtgatcctcgccgaactcatcacaaagctt
tgtatcaaggtgaaagactacggtataggtccagatgagggactctcacgattgtatacc
gttgtcattcaaatgcgcgaaggtcaaaatgacgacgatccaaatgaggtgacgtttgca
gaatttctgcacgccgtcaagcgcaagttcgccaaaatgctcgtggcgagaattggctct
gacatgaggaagagcaaaagcaacaatggtgtcatcgtgaaaaacgcgaaaaatggcccg
atgcaaggaaccacggaccctcgcaaggacgatgacgaagaagaggatgacgaaaaagag
aagaactccgccgcgcgagcgaaaaatgtcaaatttgagaatggcgacgcgtcggatgag
gacgaggacgatgaggaagacgaggaaggtgcaaagacggagaatcgcaaaatagacgaa
actgaggtcgacagcgattctgatggctcatcttcttccggtgacgatgattccgatgct
tcttcggacgacgctagcgccaagacgccaaagtcaaagaagaagcgagttccttcgagt
gagatgacggactgtggcgtacagctgacggaggatgaagttgtcgagacaatcgtgtgt
gacgaaaaatctcgaaccatagagttcacggttccagctggtataaactctcctcacgta
ctcgtgctcgaaatcgcacaagaagttgccgtgaaaacgatcattcgcgaaacgccggga
atcaagcaaactttcgtcgtcggcaagacggacgatgaagatcccactggctcgcaacct
ttatccattcaaaccgatggtatcaattttggcgccgcttgggcgaactctgatctcatc
gaggtcaactccatgaaatcaaattctgtatgggacatcatgcaaacctttggggtcgag
gcgggccgatcgacgctcgtgagcgaagtgcaagctgtattcggcgtgtacggcatcggc
gttgatacgcgtcatctttctctcatcggtgacttcatgacgcaacaaggtgaataccga
ccctgcaacagatctggcatcgaaaagagcacttcgccattcctgaagatgtcttacgag
acggcgacggcattcttaacggacgcaacaattcgcggagaaacggacgacttgagctcg
ccatcgtcgagaatcgtcgttggtcgcactgttgatctgggcacgggctcgttttctctc
aaacacgacatcgtgcgggctgcacagtaccaagaggctaacaaagccacgggcaagcac
attcgtctctga
DBGET
integrated database retrieval system
