KEGG   Ostreococcus lucimarinus: OSTLU_89708
Entry
OSTLU_89708       CDS       T01029                                 
Name
(RefSeq) predicted protein
  KO
K12812  ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
Organism
olu  Ostreococcus lucimarinus
Pathway
olu03013  Nucleocytoplasmic transport
olu03015  mRNA surveillance pathway
olu03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:olu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    OSTLU_89708
  09122 Translation
   03013 Nucleocytoplasmic transport
    OSTLU_89708
   03015 mRNA surveillance pathway
    OSTLU_89708
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:olu03019]
    OSTLU_89708
   03041 Spliceosome [BR:olu03041]
    OSTLU_89708
Enzymes [BR:olu01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     OSTLU_89708
Messenger RNA biogenesis [BR:olu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     OSTLU_89708
Spliceosome [BR:olu03041]
 Complex C
  Other components
   EJC/TREX
    OSTLU_89708
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    OSTLU_89708
SSDB
Motif
Pfam: DEAD Helicase_C ResIII DUF4926 DUF3549
Other DBs
NCBI-GeneID: 5006581
NCBI-ProteinID: XP_001422523
JGI: 89708
UniProt: A4SAY8
LinkDB
Position
20:<212933..214009
AA seq 358 aa
LAVQHECIPQAILGMDVLCQAKSGMGKTAVFVITVLQQLDPVPGEVGAVVMCHTRELAYQ
ISHEFERFSTFLGDVTTAVVFGGIPIAQQKEQLKLQPPNIVVATPGRLKALAQDGTLNLK
KCAHFVLDECDKMLEAVDMRADVQEIFKMTPHDKQVMMFTATLSKELRALCKKFMNDPME
IFVDDETKLTLHGLVQHYVKLEEAEKNRKLNDLLDSLMFNQVVIFVSSVQRCKALDKLLQ
ECNFPSIAIHGSMGQEERLARYKSFKDGDKRILVATDLVARGIDIERVNIVINYDMPSSA
DTYLHRVGRAGRFGTKGLAVTFVASSEDTEVLSSVHERFEVEIKELPDEIDQSTYMPS
NT seq 1077 nt   +upstreamnt  +downstreamnt
ttggcagtgcaacacgaatgcattccgcaagccattctcggcatggacgtgctgtgccag
gcgaagtctgggatggggaagacggccgtgttcgtcatcacggttttgcagcagctcgat
ccggtgccgggcgaggtcggcgcggtggtgatgtgccacacgcgcgagctggcgtaccaa
atttcgcacgagtttgagcgcttttctacgtttttgggcgacgtgacgacggcggtcgtt
ttcggcggcatccccatcgcccagcaaaaggagcaacttaagttgcagcctccgaacatc
gtcgtcgcgacgccgggtcgtttgaaggcgctcgcgcaggacggtaccttgaacctcaag
aagtgcgcgcactttgtgctcgacgagtgcgacaagatgttggaagccgtcgacatgcgc
gccgacgtgcaggagattttcaagatgactccccacgacaagcaggtgatgatgttcacc
gcgacgctctccaaggagctccgcgcgctgtgcaagaagtttatgaacgatccgatggag
atttttgtcgacgacgaaaccaaactcacgctgcacggtttggtgcagcactacgtcaag
ctggaagaggcggagaagaaccgcaagttgaacgatttgttggactctctcatgttcaat
caagtcgtcatcttcgtttccagcgtgcaacgttgcaaggctttggacaagctcttgcaa
gagtgcaactttccatccatcgccattcacggttcgatgggccaagaagagcgtttagcg
cgctacaagtcgttcaaagatggtgacaagcgtattcttgtcgccaccgatctcgtcgcg
cgcggtatcgatatcgagcgcgtgaacatcgtcatcaactacgacatgccgtccagcgcg
gatacgtatttgcaccgcgtcggtcgcgccggtcgcttcggcaccaagggtctcgccgtc
acgttcgtcgcctcgtccgaagacaccgaggtcttaagctctgtacacgagcgcttcgaa
gtcgagatcaaggagttaccggacgagatcgatcaatcgacgtacatgccgagctaa

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