Ostreococcus lucimarinus: OSTLU_89708
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Entry
OSTLU_89708 CDS
T01029
Name
(RefSeq) predicted protein
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
olu
Ostreococcus lucimarinus
Pathway
olu03013
Nucleocytoplasmic transport
olu03015
mRNA surveillance pathway
olu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
olu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
OSTLU_89708
09122 Translation
03013 Nucleocytoplasmic transport
OSTLU_89708
03015 mRNA surveillance pathway
OSTLU_89708
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
olu03019
]
OSTLU_89708
03041 Spliceosome [BR:
olu03041
]
OSTLU_89708
Enzymes [BR:
olu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
OSTLU_89708
Messenger RNA biogenesis [BR:
olu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
OSTLU_89708
Spliceosome [BR:
olu03041
]
Complex C
Other components
EJC/TREX
OSTLU_89708
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
OSTLU_89708
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
DUF4926
DUF3549
Motif
Other DBs
NCBI-GeneID:
5006581
NCBI-ProteinID:
XP_001422523
JGI:
89708
UniProt:
A4SAY8
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All DBs
Position
20:<212933..214009
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AA seq
358 aa
AA seq
DB search
LAVQHECIPQAILGMDVLCQAKSGMGKTAVFVITVLQQLDPVPGEVGAVVMCHTRELAYQ
ISHEFERFSTFLGDVTTAVVFGGIPIAQQKEQLKLQPPNIVVATPGRLKALAQDGTLNLK
KCAHFVLDECDKMLEAVDMRADVQEIFKMTPHDKQVMMFTATLSKELRALCKKFMNDPME
IFVDDETKLTLHGLVQHYVKLEEAEKNRKLNDLLDSLMFNQVVIFVSSVQRCKALDKLLQ
ECNFPSIAIHGSMGQEERLARYKSFKDGDKRILVATDLVARGIDIERVNIVINYDMPSSA
DTYLHRVGRAGRFGTKGLAVTFVASSEDTEVLSSVHERFEVEIKELPDEIDQSTYMPS
NT seq
1077 nt
NT seq
+upstream
nt +downstream
nt
ttggcagtgcaacacgaatgcattccgcaagccattctcggcatggacgtgctgtgccag
gcgaagtctgggatggggaagacggccgtgttcgtcatcacggttttgcagcagctcgat
ccggtgccgggcgaggtcggcgcggtggtgatgtgccacacgcgcgagctggcgtaccaa
atttcgcacgagtttgagcgcttttctacgtttttgggcgacgtgacgacggcggtcgtt
ttcggcggcatccccatcgcccagcaaaaggagcaacttaagttgcagcctccgaacatc
gtcgtcgcgacgccgggtcgtttgaaggcgctcgcgcaggacggtaccttgaacctcaag
aagtgcgcgcactttgtgctcgacgagtgcgacaagatgttggaagccgtcgacatgcgc
gccgacgtgcaggagattttcaagatgactccccacgacaagcaggtgatgatgttcacc
gcgacgctctccaaggagctccgcgcgctgtgcaagaagtttatgaacgatccgatggag
atttttgtcgacgacgaaaccaaactcacgctgcacggtttggtgcagcactacgtcaag
ctggaagaggcggagaagaaccgcaagttgaacgatttgttggactctctcatgttcaat
caagtcgtcatcttcgtttccagcgtgcaacgttgcaaggctttggacaagctcttgcaa
gagtgcaactttccatccatcgccattcacggttcgatgggccaagaagagcgtttagcg
cgctacaagtcgttcaaagatggtgacaagcgtattcttgtcgccaccgatctcgtcgcg
cgcggtatcgatatcgagcgcgtgaacatcgtcatcaactacgacatgccgtccagcgcg
gatacgtatttgcaccgcgtcggtcgcgccggtcgcttcggcaccaagggtctcgccgtc
acgttcgtcgcctcgtccgaagacaccgaggtcttaagctctgtacacgagcgcttcgaa
gtcgagatcaaggagttaccggacgagatcgatcaatcgacgtacatgccgagctaa
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integrated database retrieval system