Oenanthe melanoleuca (Eastern black-eared wheatear): 130249145
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Entry
130249145 CDS
T09236
Symbol
EXOSC7
Name
(RefSeq) exosome complex component RRP42
KO
K12589
exosome complex component RRP42
Organism
oma
Oenanthe melanoleuca (Eastern black-eared wheatear)
Pathway
oma03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oma00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130249145 (EXOSC7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oma03019
]
130249145 (EXOSC7)
Messenger RNA biogenesis [BR:
oma03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
130249145 (EXOSC7)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
130249145 (EXOSC7)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
130249145
NCBI-ProteinID:
XP_056339610
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Position
2:complement(104398868..104424305)
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AA seq
290 aa
AA seq
DB search
MAAVVLSEAEKLYIVHGVQEDLRVDGRGCEDYRCAEVETDVVSNTSGSARVKLGETDILV
GIKAEMGTPKLEKPDEGYLEFFVDCSSNSPELEGRGGEELGTDIANTLYRVFSCENTVDL
KSLCINPKEHCWVLYVDVLLLECGGNIFDAISIAVKAALFNTRIPKVRVLEDEEGTKEIE
LSDDPYDCIRLNVDEVPCIVTLSKIGYRHVVDATLQEESCSLASLLISVTSKGAITSMKK
VGKGSLDPESIFEMMETGQRVGKSLHIALQKILDEEESLGTSRPKVGFLG
NT seq
873 nt
NT seq
+upstream
nt +downstream
nt
atggcggccgtggtgctgagcgaggcggagaagctctacatcgtgcacggcgtccaggaa
gaccttcgtgtagatggtcgaggttgtgaagactacagatgtgcagaagtagaaacagat
gttgtatcaaacacaagtggatctgcaagagtaaagctgggagaaactgatatcttggta
ggcataaaagctgaaatggggacaccgaagttggagaaaccagatgaaggttacctggaa
ttttttgttgactgttcttcaaattctcctgagttggaaggccggggaggagaagaactt
ggcacagatatagcaaatacactgtacagagtattcagctgtgagaacactgtagacttg
aaatccctttgtattaatcccaaagagcactgctgggttctctatgtggatgtattgtta
ctggaatgtggtgggaacatcttcgatgcaatctctatcgcagtgaaggcagctctcttt
aacacaagaatacccaaagtgcgtgttctggaggatgaagaaggcaccaaagagattgag
ctgtccgatgatccttatgactgtattcgacttaatgtagatgaggtgccctgtattgtc
acactaagcaaaattggatacaggcacgtggtggatgctacccttcaagaagaatcctgt
tctttggcaagcctgcttatttcagtgaccagtaaaggtgccatcacttctatgaagaag
gtggggaaaggtagcctggatcctgagagtatttttgaaatgatggagacaggacagaga
gtaggcaagtcacttcacatagcccttcagaagattttggatgaagaagagagtttgggg
acttcacgaccaaaagttggatttctaggatga
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