Oenanthe melanoleuca (Eastern black-eared wheatear): 130254143
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Entry
130254143 CDS
T09236
Symbol
CLP1
Name
(RefSeq) polyribonucleotide 5'-hydroxyl-kinase Clp1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
oma
Oenanthe melanoleuca (Eastern black-eared wheatear)
Pathway
oma03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
oma00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
130254143 (CLP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oma03019
]
130254143 (CLP1)
Enzymes [BR:
oma01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
130254143 (CLP1)
Messenger RNA biogenesis [BR:
oma03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
130254143 (CLP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
AAA_18
ATP_bind_1
TniB
AAA_22
AAA_16
nSTAND3
MMR_HSR1
CbiA
PduV-EutP
Sigma54_activat
Motif
Other DBs
NCBI-GeneID:
130254143
NCBI-ProteinID:
XP_056349377
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All DBs
Position
5:9462080..9464309
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AA seq
425 aa
AA seq
DB search
MADDGGEEKKQVAKFELERETELRFEVEAAQTVQLELLTGMAEVFGTELTRNKKFTFDAG
AKVAVFTWHGCTVQLSGRTEVAYVSRDTPMLLYLNTHTALEQMRRQAEREDERGPRVMVV
GPTDVGKTTVCRLLLNYAVRLGRRPTFVELDVGQGSVSIPGTMGALYIERPADVEEGFSL
QAPLVYHFGSTTPGTNIKLYNKITSCLADVFNQRCEVNRRASVSGCVINTCGWVKSSGYQ
ALVHAASAFEVDVVVVLDQERLYNELKRDLPHFVRTVLLPKSGGVVERSKDFRRECRDER
IREYFYGFRGCFYPHAFDVKFSDVKIYKVGAPTIPDSCLPLGMSQEDNQLKLVPVTPGRD
MVHHLLSVSTADSPDDNISETSVAGFIVVTGVDLERQVFTVLSPAPRPLPKNFLLIMDIR
FMDLK
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgatggcggcgaggagaagaagcaggtggcgaagttcgagctggagcgggag
acggagctgcggttcgaagtggaggcggcgcagacggtgcagctggagctgctgaccggc
atggccgaggtgttcggcaccgagctcacccgcaacaagaagttcacgttcgacgcgggc
gccaaggtggccgtgttcacgtggcacggctgtaccgtgcagctcagcggccgcaccgag
gtggcctacgtgtcgcgggacacgccgatgctgctgtacctgaacacgcacacggcgctg
gagcagatgcggcgccaggccgagcgggaggacgagcgcgggccccgcgtcatggtggtg
gggcccaccgacgtgggcaagacaaccgtgtgccgcctgctgctcaactacgccgtgcgc
ctgggccgccggcccaccttcgtggagctggacgtggggcagggctcggtgtccatcccc
ggcaccatgggcgcgctgtacatcgagcgcccggccgacgtggaggagggcttctccctg
caggcccccctcgtctaccacttcggctccaccacgcccggcaccaacatcaagctctac
aacaagatcacgtcgtgcctggccgacgtcttcaaccagcggtgcgaggtgaaccggcgg
gcgtcggtgagcggctgcgtcatcaacacctgcggctgggtcaagagctcgggctaccag
gcgctggtgcacgccgcctccgccttcgaggtggacgtggtggtggtgctggaccaggag
cgcctctacaacgagctcaagcgggacctgccgcacttcgtgcgcaccgtgctgctgccc
aagtccggcggcgtggtggagcgctccaaggacttccgccgggaatgccgggacgagcgc
atccgcgagtacttctacggcttccgcggctgcttctacccccacgcctttgacgtcaag
ttctccgacgtcaagatctacaaggtgggcgcgcccactatcccagactcgtgcctgccg
ctgggaatgtcacaggaggacaaccagctgaagctggtgccggtgacaccggggcgggac
atggtgcaccacctgctgagcgtcagcaccgccgacagccccgacgacaacatctccgag
accagcgtggccggcttcatcgtggtcaccggcgtggacctggagcgccaggtcttcacc
gtgctgtccccggctccgcgccccctccccaagaacttcctgctcatcatggacattcgc
ttcatggacctcaagtag
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