Oenanthe melanoleuca (Eastern black-eared wheatear): 130255129
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Entry
130255129 CDS
T09236
Symbol
PCDH15
Name
(RefSeq) protocadherin-15 isoform X1
KO
K16500
protocadherin-15
Organism
oma
Oenanthe melanoleuca (Eastern black-eared wheatear)
Brite
KEGG Orthology (KO) [BR:
oma00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
oma03037
]
130255129 (PCDH15)
04515 Cell adhesion molecules [BR:
oma04515
]
130255129 (PCDH15)
Cilium and associated proteins [BR:
oma03037
]
Primary cilia and associated proteins
USH complex and associated proteins
130255129 (PCDH15)
Cell adhesion molecules [BR:
oma04515
]
Cadherins
Protocadherins
130255129 (PCDH15)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
ECD
PCDH15_12th
Cadherin_FAT4_N
Cadherin_CELSR2_9th
Fibulin_C
Cadherin_2
RET_CLD1
Motif
Other DBs
NCBI-GeneID:
130255129
NCBI-ProteinID:
XP_056351489
LinkDB
All DBs
Position
6:912810..1555862
Genome browser
AA seq
1710 aa
AA seq
DB search
MIQQLCLWKWFTVGTALAAVLAWALAQNDEDCKLARTGPPATIVPIDEESRNGTILVDNM
LIKGTAGGPDPTIELSLKDNVDYWVILDPIKQTLYLNSTGRVLDRDPPLSIQSIVVQVQC
VNKKVGTIINHEVRIVVRDRNDNSPQFQQQRYYVAVNELTPVGTTIFTGFSGNNGAIDID
DGPNGQIEYVIQYNPNDKTSNRTFDIPLTLSGAVVLRERLNYEEKTRYFVIVQANDRAQN
LNERRTSTTTLTVDVLDGDDLGPMFLPCVLVNNTRDCRPLTYQASLPELTDPARVNPISV
TPPIQAIDQDRNIQPPSDRPGILYSILIGTPEDYPQYFHMNLTTAELTLLKPINRDLHQK
FDLVIKAEQDNGHPLPAFANLHIEILDENNQKPYFTRSAYEGFILESSPVGTTISDNRNL
TSPLQVVVLDNDVEETKDPQLHLFLNDYTTFFTVTQSGITRYLTLLQPVDRETQQLYTFS
MTASDGVQESVPVTVNILVIDANDNTPTFSNISYNVKIYTDMRPGEGVIKLTAVDADEGA
NGQIVYEILAGAQGDFAINEQTGLITIAPGVVLAVGRSYALTVRASDRAPPAQRRSSITT
VYIEVLPPNNQSPPRFPQLMYSLEVSEAMRIGAVLLNLQAFDREGDPIKYLIQNGDPQQV
FNLSQSSGLLALGKPLDRESTDRYILIVTASDGRPDGTSTATVNIVVTDVNDNGPVFDMF
LPKNLSVQEEEANAFVGQVRATDADAGVNGQVHYSLANFRNLFRITSNGSIYTAVKLNRE
LRDSYELIVEATDGAVDPRRSTITLAIKVLDIDDNSPVFTNASYTVCVPENLPPGTVFLQ
LEAKDVDLGADVNYQIRTEEARQYFSLNKHTGELSLRKSLDYESFSDTEATFTFLVEAFD
SKGTMPPGLATVTVRVKDMNDYSPVFSQKLYRGMVAPDAVKGTVITTVSAEDQDPPGTPA
SRVRYKVDVVQFPYSASIFDVEENSGRVVTRVNLNEEPSTVFKLVVIAFDDGDPVKFNTT
TVEITVLQPSVIPRFTQDEYRPPPVSESAPKGTVVTVVTAAALNQTVVYSIVSGNEEDVF
AINNRTGVISVKKPLDYESVQSYELRVQADSLQVVRSNLRVPSKSNTAKVFVQVKDENDH
APVFTKKMYIGGVSEDARMFSSVLKVKADDKDTGNYSAMQYRLIIPPIKDGKEGFVIEAY
TGLIKTAMLFKNMRRSYFKFQVIATDDYGKGLSSKAEVLVSVVNQLDMQVIVSNVPPTLV
EQNKDQLIGILERYVQDQIPGAAVVVESIGARRFGDGYSEEDYTKSDLMVYAIDPQTNRA
IMRNELFKFLDGKLLDINKEFQPYLGQGGRILEIRTPDVVANVKKQAQAVGYTEGALLAL
AVIIILCCMPAILIVMVSYRQRQAECAKTARIQMALPAGKPAGAAANNLYEELGDSTMRG
YAQQEQQQLLRPSLLRPEELSMESGIDPGQEYYGQDYYSYEHGYELPQYGSRRRLLSPSG
MYDEYGEVVVESDGGYYYSPHGPAAEEWAKKKRIKLVVDPEYETSSAGEESAGDAGQRSR
LGTPGLQPSSNGNIYIAQNGSVVRTRRACLGSAAKASSPVRLGKHFRKLDRLAVTHEESV
PLSTLSKGPSPGDKMNSRPCSVSFASAIGAENVVTKAGAAKLKSTDEQESVVDHEEVKEP
LESHSEHTQSDEEELWMGPWNNLHIPMTKL
NT seq
5133 nt
NT seq
+upstream
nt +downstream
nt
atgatccagcagctttgtctctggaaatggttcacagtggggacggcactcgctgctgtc
ctggcgtgggctctggcccagaatgatgaagattgcaagttggccagaacaggtcctcca
gccacaatagttcccattgacgaagagagtcgcaacggcactatcctggttgacaacatg
ctgatcaaagggacagcaggaggccctgaccccaccatcgagctctccctgaaggacaac
gtggattactgggtgatcctggaccccatcaagcagaccttgtacctgaacagcactggc
agggtgctggacagagatccacccctgtccatccagtccatcgtggtgcaggtgcagtgt
gtgaacaagaaggtgggcaccatcatcaaccacgaggtgcgcatcgtggtgcgggaccgc
aacgacaactccccgcagttccagcagcagcgctactacgtggccgtcaacgagttaact
ccagttggaacaaccatcttcacaggattttctggaaacaatggtgctattgacattgat
gatggtcccaatggacagatagaatatgtcatccagtacaatcctaatgacaagacttcc
aacaggacctttgatattcctctcactttgtccggagcagtcgttctgagggaaagacta
aattatgaagaaaagactcgttattttgtcattgttcaagcaaatgaccgagcccaaaac
ctgaacgagcggaggacgagcacgaccaccctgaccgtggatgtgctggatggggacgac
ctggggccaatgttcctgccctgtgtgctggtgaacaacaccagggactgcagacccctc
acctaccaagccagcctgcccgagctgacggatcctgcccgtgtgaatcccatcagtgtc
actccacccatccaagccatagaccaggaccgaaacatccagcctccctccgatcgacct
ggcatcctctattccatcctaattggtactcctgaggattatccccagtatttccatatg
aatctcacaacagctgaactgacactcctcaagccaataaatagggatttacaccaaaag
tttgacttggttattaaggctgaacaagacaatggccatcctctccctgcctttgccaat
ctccacatcgagatcctggatgagaacaaccagaagccttatttcacaaggtctgcctac
gagggcttcatcctggaatcctccccggtgggaacgaccatctcggataatcggaacctg
acctcccccctgcaggtcgtggtgctggacaacgacgtggaagagaccaaggatccacag
ctccatctcttcctgaacgactacaccacgtttttcactgtgactcagagtggcatcacc
cgctacctcaccctgctgcagcccgtggacagggagacccagcagctctacaccttctct
atgacagcttctgatggagtccaggagagtgtcccagtgactgtcaacatcctggtgatc
gatgcaaatgataacaccccgaccttctccaacatttcctacaatgtcaagatctataca
gatatgaggcctggggaaggtgttattaagctgacggccgtggacgcggacgagggagcc
aatggccagatagtgtacgaaatcctggctggggctcagggagacttcgccatcaatgag
cagacggggctgatcaccatcgctccgggagtggtgctggcggtggggcgctcctacgcg
ctcacggtcagagcctctgacagagccccccccgcgcagagaaggagctccatcaccact
gtttacatcgaggtgctgccccccaacaaccagagccctccgcgcttcccccagctgatg
tacagcctggaagtgagtgaggccatgaggatcggcgctgttctgttaaacctgcaggct
tttgatagagagggcgaccccatcaaatacctcattcagaatggagatcctcaacaagtt
tttaatctctctcaaagctctggcctgctggccttgggaaagccgctggacagagagagc
actgaccgctacatcctgatcgtcacggcctcggacggccggcccgacgggacttcgact
gctactgtcaatatagtggtgacagatgtcaatgacaatggaccagtttttgacatgttt
ctccccaaaaacctgtctgtgcaggaagaggaagccaatgcttttgttggtcaagtaagg
gccacagatgcagatgctggggtgaatgggcaggtccattacagtctggcaaacttcagg
aaccttttccggatcacgtccaacggcagcatttacacggccgtgaagctgaacagggag
ctgagggattcctacgagctcatcgtggaggccacagacggggctgtggatccccggcgc
tccactatcactttggccatcaaggtgctggatattgatgacaacagccccgtgttcacc
aacgcctcctacacggtctgtgtgccagagaatctcccaccaggaactgtcttcctgcag
ctggaggccaaggacgtggacctgggtgctgatgtgaactatcagatccgcactgaggaa
gcccggcagtacttttccctgaacaagcacacaggagagctgtcactccggaaatccttg
gattatgaatccttctctgacacagaggcaaccttcaccttcctcgtggaagcctttgac
agcaagggcacgatgcctcccgggctggctactgtcaccgtcagggtcaaggatatgaac
gattactctccagtgttcagccagaagctctacaggggaatggttgctcctgatgcagtc
aagggcactgttatcaccacggtctcggctgaggatcaggatcccccgggcaccccagcc
agtcgggtccgctacaaggtggatgttgtccagtttccctacagcgccagcatttttgat
gtagaggaaaactccggacgtgtcgtcacccgagtgaacctcaacgaagagcccagcaca
gtgttcaagctggtggtcattgcctttgatgatggggacccagtgaagttcaacaccacc
acagtggaaatcacggtgctgcagccctcagtcatcccacgcttcacacaggatgaatac
agaccccccccagtgagtgaaagtgccccgaagggaaccgtggtcactgttgtcactgca
gcagccttgaaccagactgttgtgtactccattgtgtcagggaatgaggaggatgtgttt
gccattaacaacagaacaggagtgatctctgtgaaaaagcctctggactatgaaagtgtc
caaagttacgagctccgagtgcaggcagactccctgcaggtggtgagatccaacctgaga
gtcccctccaaaagtaatacagccaaggtctttgttcaggtgaaggatgaaaatgaccat
gcacctgtgtttaccaaaaaaatgtacattggaggggtgtctgaagatgccagaatgttt
tcttctgtgcttaaagtgaaggccgatgataaggacactgggaattacagtgccatgcag
tacagactcatcattccccccatcaaggatggcaaggaaggctttgtgattgaggcttac
acggggctgatcaaaactgccatgctgttcaaaaacatgaggagatcctatttcaagttc
caggtcattgccactgacgattacggcaaaggactgagcagcaaagcagaagtgctcgtc
tctgtggtcaaccagttggacatgcaagtgattgtctccaacgttcctcccacccttgtg
gagcaaaacaaagaccaactcattgggattttggagcgctacgtccaggaccagatcccg
ggggctgcggtggtggtggagtccatcggggcgcggaggtttggggacggatattccgag
gaggattacaccaagtccgacctcatggtctacgccatcgacccccaaaccaacagagcc
atcatgaggaacgagctgtttaagttcctggatggcaaactgctggacatcaacaaggag
ttccagccctacctgggccagggcgggcgaatcctggagatccgcacgccggacgtggtg
gccaacgtgaagaagcaggcacaggccgtgggctacacggagggggcactgctggccctg
gctgtcatcatcatcctgtgctgcatgccagccatcctcattgtcatggtcagctacagg
cagcggcaggctgagtgtgccaagactgcgaggatccagatggctctgccagcaggaaaa
ccggctggagccgcggccaacaacctctatgaggagcttggggacagcaccatgcgagga
tatgcacagcaagagcaacagcagttgctgagaccttctcttctcagaccagaggagctg
agtatggagtctggaattgatccagggcaggaatactatggccaggattactacagttat
gagcatgggtacgagctgccgcagtacgggagccggcggcgcctgctgtccccgtcgggc
atgtacgacgagtacggcgaggtcgtggtggagagcgacggtggctactactacagtccc
cacgggccagcagcagaggagtgggccaaaaagaagaggatcaagctggtggtggacccg
gagtacgagaccagctcggcgggcgaggagagcgctggggacgccgggcagaggagccgg
ctgggcacccccggcctccagcccagcagcaatggcaacatctacatcgcccagaacggc
tccgtggtgcgcacccgccgcgcctgcctcggcagcgccgccaaggcctcctcccccgtg
aggctggggaagcacttcaggaagctggacaggctggcggtgacacacgaggagagcgtc
ccgctgagcaccttgtccaagggaccgtccccgggtgacaaaatgaactccaggccgtgc
agtgtctcctttgcctctgctataggggctgaaaatgtagtgacaaaggccggggcggcc
aaactgaaaagcacagacgagcaggaatcggttgttgaccacgaggaagtcaaggagccc
ttggagtctcacagtgaacacacacagtccgacgaggaggagctctggatgggcccttgg
aacaacctccacataccaatgacaaaactgtga
DBGET
integrated database retrieval system
