Oenanthe melanoleuca (Eastern black-eared wheatear): 130265618
Help
Entry
130265618 CDS
T09236
Symbol
SKIC3
Name
(RefSeq) SKI3 subunit of superkiller complex protein
KO
K12600
superkiller protein 3
Organism
oma
Oenanthe melanoleuca (Eastern black-eared wheatear)
Pathway
oma03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oma00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130265618 (SKIC3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oma03019
]
130265618 (SKIC3)
Messenger RNA biogenesis [BR:
oma03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
130265618 (SKIC3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_19
TPR_2
TPR_14
TPR_8
TPR_11
TPR_16
TPR_12
TPR_17
TPR_CcmH_CycH
TPR_9
ANAPC3
ARM_TT21_C
TPR_6
TPR_15
ARM_TT21_N
Retrotran_gag_2
BTAD
TPR_30
Fis1_TPR_C
TPR_5
HAT_Syf1_M
TPR_20
Motif
Other DBs
NCBI-GeneID:
130265618
NCBI-ProteinID:
XP_056370791
LinkDB
All DBs
Position
Z:complement(4245242..4291654)
Genome browser
AA seq
1562 aa
AA seq
DB search
MSNKEVKAALKSARDAIRNKEYKEALKHCKAVLKQEKNNYNAWVFIGLAAAELEQPDQAR
GAYKKAIELEPNQLLAWQGLANLYEKPNQTDVKGDLADVYQKLLELYESGDKQKWCDVCN
KLVELYHQEKKYLEVAETLQKLIKMKQDEGAEKAELHQLWKKMIHLLKDSTRNQDNKTGQ
LLLAAFEQALLSADTVPGDNHQNLYKDFIECLSRFPHEVARLEKACHDMVALYPTVSYPL
EVLCLHFVQSGTLPEEALDCFSRLLEMDANSGPGIIGFGIKCLKENKYKEAVKNLTEGLQ
KTNQCPAAWHYLAEAQMKIHEHRNAVLSCNKALEALGTSEGPNLRWKNLALQLKAETLIK
IADADAAEEAIKALELIVDGSNDPVVSALRGQAYLNKGLMGQASKISQELLLSHPDLAEA
HALEGFIHYSQKNYEQAEKSFLNAIERKAGTAEYHQYLGLTYWFMSDETKKDKGKALTQF
LKAAKLDSYLGSAFCYLGNYYRDIAGDKSRARGCYKKAFELDETDEESGTAAVNLSVELG
DMDTALSILNEVTAKARPGTAKWAWLHRGLYYLRTGQPSQAVADLQAALRADPKDPNCWE
SLGEAYLNRGSYSTALKSFRKASELNPGLVYSIYRAAALEQILGKYENAIATYQQILKKT
ENYVPALKGLGECYLMLARSALDNYLDRKAVDYIEQALAYFTRAVKHRPDVSCLWKLLGD
TCTSVHVISPTKVNVQVPGSLLSNSATKQILKKNELLILGGRCYGRALKLMSLPSIWCDL
GINYYRQAEHLTAVGTDVNEISELLEKSLQCLKKAVRLDSKNHLYWNALGVVACCSAIGN
YALAQHSFIKSVQAEQINTVAWTNLGVLYLTTGNIEQAHEAFKIAQSLDPSYLLCWIGQA
LIAETVGSYDTMDLFRHTTELSMHTEGAKGYAHWVCSTLQDKTNRNTELYLYNIVQMNAI
PAAQVVLSKYIERNPDDASAFTMFGFLNEYLHLKQQAAYAYERAASLLKNSEDTEKYNTA
MQNYGRSLCALGLCDEAIEVYTSIPLTEFDGIVGLALAYFKKGLLEESIKAYEKALSVAE
SEKDKEHILTALAIIEYKLNKVDAAKTLLFKCSLKEPSTESLKALCTLGLVKQDATLATA
ALKELLKHEKGDEGIDETCLIASAVYALQGRNMAIQREVSKAIHSYPGNPALWSLLSRLV
PLYASKKPKGGAVAGSVAHTLDVNRGKEVLLNIAVNQLVAGCHMLEDKKNNPLKNIQKAI
HVCPDNPAAWAVLMAACHAENTVVCLNNTEPKRTGLEMTLVSTVSAKTGESNLPHNYVRT
LEDWCLCQAITSLEETGKLSEAEALCKKGLKSRPEHPALFLLLRQVQCKQLLQSHRELPD
NILEELHKTVMSSSSSAAAWQWLAKIYQSQRMMTGAEMCYRKSLQLASQQGSWNGKLSSL
LRLAMLALEICMANVSNEHWPSLVQEATTEALKLSPCPLAVLLQALLQYNRKMGARETRR
MLEKVVYQPENPKTVVSVARWYLLQHLYAKDDCELIDVLIENAKANGDVRALELNEKLSA
SA
NT seq
4689 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaataaggaggtgaaggcagcattaaagagtgctagagatgcaataagaaataaa
gagtacaaggaggccttaaaacattgcaaggcagtcttgaagcaagaaaaaaataactac
aatgcttgggtgttcattggcctggcagccgctgagttagagcagcctgatcaggccaga
ggagcatacaagaaggctattgagcttgaaccaaaccagttactggcatggcagggatta
gcaaatttgtatgagaaacccaatcaaacagatgtcaaaggagacttagcagatgtttac
caaaaactcttggaactctatgaaagtggtgacaagcagaaatggtgtgatgtatgtaac
aagcttgtggaactatatcatcaagaaaagaagtatttagaggtggctgaaactttgcag
aagctaataaagatgaaacaggatgaaggtgcagaaaaggcagagcttcatcagctttgg
aagaagatgatccatttactgaaagacagtacaaggaaccaggataataagactgggcag
ttgcttttggctgcatttgaacaagcgctgctctctgctgacactgttcctggtgacaac
caccaaaatctttacaaagacttcatagagtgcttgtcaaggtttcctcatgaagtagct
aggttggaaaaagcctgtcatgatatggtggctttgtaccctactgtgagttacccattg
gaagtactttgcttgcactttgttcagtcaggtactttgccagaagaggccctggactgt
ttctctaggcttttggagatggatgcaaacagtggtccaggcatcattggttttggtata
aaatgtctcaaagaaaataaatacaaggaggcagttaagaatctgactgaaggtttgcag
aagactaatcagtgtccagcagcatggcattatctagcagaggcacagatgaaaatccat
gagcacaggaatgctgtcctgtcctgtaataaagctcttgaggctcttggaacttctgag
ggtcctaatcttcggtggaagaaccttgcccttcagttgaaagcagagactttgattaaa
atagctgatgctgatgctgcagaagaagccattaaagcacttgagctgattgtagatgga
agcaatgatccagtggtttcagctctcaggggtcaggcttatctaaacaaaggtttaatg
ggccaagcttcaaagatttcacaagaacttctgttgtcccaccctgatctggctgaagcc
catgctctagagggtttcatccattattcccaaaagaactatgagcaggcagagaaaagt
tttttaaatgctattgaaaggaaggctggaactgcagagtatcatcagtacctggggctc
acatactggttcatgagtgatgagacaaaaaaagacaaaggaaaagcactcactcagttc
ttgaaggctgcaaaattggacagctacttgggaagtgccttttgttatctaggtaactac
tacagagacattgctggagacaaaagtagagctcgtggttgctataaaaaggcttttgaa
ctggatgagacggatgaagaatctggaacagcagctgttaacttaagtgtggaacttgga
gacatggacactgctctgtcgatcctgaatgaagtaactgcaaaagcaagacctggtaca
gcaaaatgggcctggcttcatcgtggactttactacttgagaactggtcagccgtcacaa
gcagtggctgatttgcaggcagctctcagggccgatccaaaggatcccaattgctgggag
tctctaggagaggcttacttgaacagaggtagctactcaacagctctgaaatccttcagg
aaagcaagtgagctgaacccagggctcgtgtacagcatttacagagctgcagcgcttgag
cagattctaggcaaatatgaaaatgctatagctacctatcaacaaattttaaagaagaca
gaaaactatgtgcctgcactaaaaggacttggtgagtgttatctcatgctggcaagatca
gcccttgataactatttggataggaaggctgtggattacatagagcaggcccttgcatat
tttacaagggcagtaaagcaccgtcctgatgtatcttgcctttggaaactcttaggagat
acctgtactagtgtgcatgttatttcaccaaccaaagtaaatgttcaagtaccaggatcc
cttctgagtaacagtgcaaccaaacaaatactgaagaaaaatgagcttctcatactggga
ggaaggtgttatggcagagctttaaaactgatgtctttgcctagcatatggtgtgatctt
ggaataaattattatcgacaagcagagcacctcacagcagtgggcaccgatgtgaatgag
atcagtgaactcctagagaagtctttgcagtgtctcaaaaaagctgtaagacttgacagc
aaaaatcatctttattggaatgcacttggtgtagttgcttgttgtagtgctattgggaat
tatgctcttgctcaacattcgttcatcaaatctgttcaagctgagcaaattaatactgtt
gcctggaccaacttgggggttttgtatctgacaactggaaacattgagcaagctcatgaa
gccttcaagatagcccagtctctggacccttcttacctgttgtgttggattggacaggct
cttattgcagagactgtgggcagctatgataccatggatctcttcaggcacacgactgaa
ctcagtatgcatactgagggagcaaaaggctacgcccactgggtatgttcaacactccag
gataaaaccaacagaaacactgaactgtatctgtacaacattgttcaaatgaatgctata
ccagcagcccaagtggtcttgagcaaatatatagaaagaaatccagatgatgcttctgct
ttcacaatgtttgggtttttgaatgaatatctgcatctaaaacagcaggcagcctatgcc
tatgagagggcagcttcactgctgaagaactcagaggatactgagaaatacaatacagca
atgcaaaactatggcaggtcactgtgtgctcttgggctgtgtgatgaggccatcgaagtt
tacacatcaatacccctaactgagtttgatggcattgtggggctagcattagcttacttc
aagaaaggactcttagaagaaagtatcaaagcctatgaaaaagccttgtctgttgctgag
tctgaaaaagataaagaacatatcctgactgccttggcaataatagagtataaactgaac
aaagtggatgctgcaaagactctgctgtttaaatgctcgctaaaggagcctagtacggaa
agtctgaaggctttgtgcacactgggattggtaaagcaggatgcaacacttgcaacagca
gccctaaaagaattactgaagcatgaaaaaggggatgaggggattgatgagacgtgtctt
attgcatctgctgtttatgcattacaaggcagaaatatggcaatccagagggaagtttcc
aaagcaatacacagttaccctggtaatcctgccctttggtctcttctgtctcgactagtt
ccactttatgcatcaaaaaagccaaaaggaggagctgtggcaggaagtgttgcacataca
cttgatgtaaaccgtggaaaggaagtcctgctgaatattgcagttaatcagttggtagca
ggatgtcacatgttagaagataagaaaaacaatcctctgaaaaatattcagaaggccatc
catgtctgtccagataatcctgctgcttgggcagtgctaatggcagcctgtcatgctgaa
aacactgttgtctgtctaaacaacactgaaccgaaacgaacaggtctagagatgacactt
gtgtctacagtttcagccaaaactggagaaagtaaccttccacataattatgtccgtacg
cttgaagattggtgtctgtgtcaagctattaccagtctagaggagactggtaaactatca
gaagctgaagctctttgtaaaaagggtttaaaaagccgtcctgagcacccagctctgttt
ttgcttttgagacaagttcagtgtaaacagctgttgcaatctcacagagaacttccagac
aacatcctggaggagcttcacaagacagtcatgtccagttcatcctcagctgcagcctgg
caatggctggcaaaaatatatcagtctcagagaatgatgactggagcagagatgtgttac
aggaagagtctgcagttggcatcacagcagggcagctggaatgggaagttatccagtctg
ctcaggctggctatgcttgcactggagatctgcatggctaatgtctcaaatgaacactgg
ccatccttggttcaggaggcaacaactgaagctttgaaactttctccttgtcccttggca
gttctgcttcaagccctgctacagtataatcgcaaaatgggagcaagggagactcggcga
atgttggagaaagtcgtttatcaaccagagaatcccaaaactgtagtgtcagtggcacgc
tggtacctcctgcaacatctgtatgccaaagatgattgtgaattaatagatgtgcttata
gaaaatgccaaagctaatggagatgttagagctctggagctaaatgagaaattgtcagca
agtgcctag
DBGET
integrated database retrieval system
